Wall clock time and date at job start Tue Mar 31 2020 13:08:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09001 * 109.46992 * 2 1
4 4 O 1.42898 * 109.47086 * 239.99965 * 2 1 3
5 5 C 1.42899 * 114.00376 * 89.99740 * 4 2 1
6 6 C 1.52997 * 109.46953 * 179.97438 * 5 4 2
7 7 C 1.50700 * 109.46809 * 180.02562 * 6 5 4
8 8 C 1.38241 * 120.00091 * 269.73126 * 7 6 5
9 9 C 1.38235 * 119.99726 * 179.76955 * 8 7 6
10 10 C 1.38231 * 120.00327 * 0.47546 * 9 8 7
11 11 C 1.38238 * 119.99908 * 359.80276 * 10 9 8
12 12 C 1.38235 * 120.00021 * 90.00327 * 7 6 5
13 13 C 1.50692 * 109.47056 * 119.99575 * 2 1 3
14 14 O 1.21281 * 120.00417 * 113.43076 * 13 2 1
15 15 N 1.34785 * 120.00242 * 293.43296 * 13 2 1
16 16 C 1.47061 * 136.05606 * 354.96930 * 15 13 2
17 17 C 1.53492 * 88.05105 * 207.05938 * 16 15 13
18 18 O 1.42904 * 114.20443 * 87.55022 * 17 16 15
19 19 C 1.50696 * 114.20894 * 220.37724 * 17 16 15
20 20 H 1.08000 * 119.99825 * 359.97438 * 19 17 16
21 21 C 1.37877 * 120.00076 * 180.02562 * 19 17 16
22 22 N 1.31514 * 119.99944 * 359.97438 * 21 19 17
23 23 Si 1.86799 * 120.00237 * 179.97438 * 21 19 17
24 24 H 1.48502 * 109.47153 * 359.97438 * 23 21 19
25 25 H 1.48500 * 109.47486 * 119.99597 * 23 21 19
26 26 H 1.48503 * 109.47101 * 239.99995 * 23 21 19
27 27 C 1.47062 * 136.05844 * 174.92584 * 15 13 2
28 28 H 1.09011 * 109.47214 * 305.11949 * 1 2 3
29 29 H 1.09005 * 109.47535 * 65.11465 * 1 2 3
30 30 H 1.09000 * 109.47385 * 185.12117 * 1 2 3
31 31 H 1.08996 * 109.47276 * 300.00320 * 5 4 2
32 32 H 1.09007 * 109.46561 * 60.00014 * 5 4 2
33 33 H 1.08992 * 109.47449 * 299.99928 * 6 5 4
34 34 H 1.09000 * 109.47112 * 60.01094 * 6 5 4
35 35 H 1.07993 * 119.99906 * 359.97438 * 8 7 6
36 36 H 1.08003 * 119.99751 * 180.25187 * 9 8 7
37 37 H 1.08001 * 120.00036 * 179.77013 * 10 9 8
38 38 H 1.08003 * 120.00102 * 179.97438 * 11 10 9
39 39 H 1.07995 * 119.99902 * 359.97438 * 12 7 6
40 40 H 1.09003 * 113.47288 * 321.87002 * 16 15 13
41 41 H 1.08999 * 113.46645 * 92.24954 * 16 15 13
42 42 H 0.96699 * 113.99921 * 180.02562 * 18 17 16
43 43 H 0.97003 * 119.99936 * 180.02562 * 22 21 19
44 44 H 1.08999 * 113.46672 * 267.68998 * 27 15 13
45 45 H 1.09008 * 113.46991 * 38.07271 * 27 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0063 -0.6736 -1.1668
5 6 2.2000 0.1828 -2.2941
6 6 2.7090 -0.6408 -3.4788
7 6 2.9139 0.2626 -4.6675
8 6 1.8810 0.4730 -5.5619
9 6 2.0675 1.3054 -6.6496
10 6 3.2898 1.9196 -6.8484
11 6 4.3244 1.7047 -5.9572
12 6 4.1364 0.8764 -4.8666
13 6 2.0323 -0.7103 1.2305
14 8 2.6282 -1.7612 1.1233
15 7 1.8193 -0.1778 2.4502
16 6 1.2453 1.0703 2.9752
17 6 2.1383 0.8993 4.2118
18 8 3.4426 1.4672 4.0758
19 6 1.4651 1.2504 5.5135
20 1 0.4395 1.5888 5.5169
21 6 2.1587 1.1405 6.7000
22 7 3.4078 0.7289 6.6958
23 14 1.3245 1.5764 8.3135
24 1 -0.0708 2.0100 8.0481
25 1 1.3130 0.3867 9.2022
26 1 2.0681 2.6798 8.9730
27 6 2.0579 -0.5894 3.8417
28 1 -0.3634 0.5913 0.8407
29 1 -0.3634 0.4325 -0.9323
30 1 -0.3634 -1.0235 0.0917
31 1 1.2538 0.6546 -2.5589
32 1 2.9319 0.9513 -2.0450
33 1 3.6553 -1.1121 -3.2138
34 1 1.9774 -1.4094 -3.7280
35 1 0.9275 -0.0104 -5.4090
36 1 1.2593 1.4730 -7.3462
37 1 3.4366 2.5670 -7.7003
38 1 5.2796 2.1843 -6.1127
39 1 4.9445 0.7089 -4.1700
40 1 1.4942 1.9475 2.3780
41 1 0.1802 0.9992 3.1957
42 1 4.0027 1.3574 4.8563
43 1 3.8957 0.6512 7.5306
44 1 1.2094 -1.1029 4.2940
45 1 2.9973 -1.1245 3.9812
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000450768513.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:08:35
Heat of formation + Delta-G solvation = -72.235861 kcal
Electronic energy + Delta-G solvation = -26051.242767 eV
Core-core repulsion = 22228.046092 eV
Total energy + Delta-G solvation = -3823.196675 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-39.84642 -39.53363 -38.26420 -36.82112 -34.05374 -33.77594 -32.20656 -31.45148
-31.14813 -28.71802 -28.30715 -25.61578 -25.13580 -24.09906 -23.01451 -22.82879
-21.16138 -20.14017 -18.41056 -17.45639 -17.13848 -16.83220 -16.34074 -15.94656
-15.42913 -15.24909 -15.11762 -14.96189 -14.51983 -14.19616 -13.79813 -13.68098
-13.40476 -13.18853 -12.96357 -12.84722 -12.67786 -12.52209 -12.12644 -12.02131
-11.89069 -11.57670 -11.50383 -11.29327 -11.19022 -11.11218 -11.08113 -10.83293
-10.48416 -10.28392 -9.83702 -9.58477 -9.18163 -9.01620 -8.96077 -8.76362
-8.40739 -7.84747 -6.41224 -4.52261 1.06474 1.13887 3.06497 3.12830
3.17544 3.22513 3.25451 3.52677 3.99880 4.16962 4.57958 4.65819
4.76579 4.79767 4.82107 4.88522 4.92377 5.03607 5.11578 5.22889
5.25613 5.29194 5.31541 5.48821 5.60767 5.64569 5.69835 5.74346
5.83622 5.91798 5.93549 6.09545 6.19923 6.22064 6.23372 6.25161
6.39739 6.42709 6.66269 6.74363 6.80763 7.08283 7.18105 7.61607
7.77524 8.47458 8.52404 8.78377 9.19146 9.46796 10.65548
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.027516 B = 0.002178 C = 0.002144
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1017.348137 B =12853.229658 C =13056.467760
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.078 3.922
3 H 0.082 0.918
4 O -0.358 6.358
5 C 0.066 3.934
6 C -0.080 4.080
7 C -0.079 4.079
8 C -0.115 4.115
9 C -0.120 4.120
10 C -0.125 4.125
11 C -0.119 4.119
12 C -0.114 4.114
13 C 0.537 3.463
14 O -0.541 6.541
15 N -0.634 5.634
16 C 0.099 3.901
17 C 0.241 3.759
18 O -0.573 6.573
19 C -0.534 4.534
20 H 0.074 0.926
21 C 0.071 3.929
22 N -0.896 5.896
23 Si 0.910 3.090
24 H -0.270 1.270
25 H -0.281 1.281
26 H -0.280 1.280
27 C 0.081 3.919
28 H 0.074 0.926
29 H 0.065 0.935
30 H 0.067 0.933
31 H 0.050 0.950
32 H 0.051 0.949
33 H 0.084 0.916
34 H 0.082 0.918
35 H 0.123 0.877
36 H 0.121 0.879
37 H 0.120 0.880
38 H 0.122 0.878
39 H 0.124 0.876
40 H 0.065 0.935
41 H 0.087 0.913
42 H 0.395 0.605
43 H 0.274 0.726
44 H 0.079 0.921
45 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.817 3.052 -20.454 21.030
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.017 3.983
3 H 0.099 0.901
4 O -0.276 6.276
5 C -0.011 4.011
6 C -0.117 4.117
7 C -0.079 4.079
8 C -0.133 4.133
9 C -0.138 4.138
10 C -0.143 4.143
11 C -0.137 4.137
12 C -0.132 4.132
13 C 0.325 3.675
14 O -0.419 6.419
15 N -0.370 5.370
16 C -0.024 4.024
17 C 0.199 3.801
18 O -0.386 6.386
19 C -0.572 4.572
20 H 0.092 0.908
21 C -0.132 4.132
22 N -0.536 5.536
23 Si 0.736 3.264
24 H -0.194 1.194
25 H -0.207 1.207
26 H -0.206 1.206
27 C -0.042 4.042
28 H 0.093 0.907
29 H 0.084 0.916
30 H 0.086 0.914
31 H 0.068 0.932
32 H 0.069 0.931
33 H 0.102 0.898
34 H 0.100 0.900
35 H 0.141 0.859
36 H 0.139 0.861
37 H 0.138 0.862
38 H 0.140 0.860
39 H 0.142 0.858
40 H 0.084 0.916
41 H 0.105 0.895
42 H 0.252 0.748
43 H 0.084 0.916
44 H 0.098 0.902
45 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -3.477 2.311 -21.194 21.602
hybrid contribution -0.241 0.316 1.341 1.399
sum -3.718 2.627 -19.853 20.368
Atomic orbital electron populations
1.22171 0.93760 1.03547 1.02835 1.21801 0.94857 0.96275 0.85378
0.90066 1.88000 1.86667 1.34103 1.18859 1.22517 0.99504 0.92918
0.86130 1.20466 1.03436 0.96955 0.90825 1.19781 0.94001 0.97973
0.96171 1.21107 0.98695 0.98802 0.94704 1.21149 0.97440 0.97385
0.97846 1.21167 0.93537 1.00107 0.99517 1.21174 0.99118 0.98528
0.94861 1.21158 0.97086 0.97060 0.97884 1.19677 0.80122 0.85074
0.82661 1.90659 1.41887 1.23565 1.85743 1.49673 1.60122 1.22263
1.04908 1.23420 0.98479 0.85681 0.94800 1.19552 0.82471 0.87278
0.90848 1.86007 1.25897 1.80362 1.46326 1.21438 0.99438 1.46211
0.90147 0.90830 1.25105 0.94903 0.93191 0.99983 1.69278 1.09650
1.46165 1.28515 0.86253 0.79644 0.78276 0.82178 1.19405 1.20651
1.20625 1.24198 1.00611 1.02855 0.76496 0.90720 0.91600 0.91377
0.93158 0.93075 0.89784 0.89958 0.85941 0.86087 0.86194 0.86008
0.85792 0.91638 0.89483 0.74795 0.91555 0.90248 0.91747
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.16 9.49 37.16 0.35 -1.81 16
2 C 0.08 1.27 2.96 -27.89 -0.08 1.19 16
3 H 0.08 1.21 7.79 -51.93 -0.40 0.80 16
4 O -0.36 -5.86 9.53 -55.05 -0.52 -6.38 16
5 C 0.07 0.81 5.73 37.16 0.21 1.02 16
6 C -0.08 -0.86 5.72 -27.88 -0.16 -1.01 16
7 C -0.08 -0.78 5.13 -104.62 -0.54 -1.32 16
8 C -0.12 -1.03 9.70 -39.58 -0.38 -1.41 16
9 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16
10 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16
11 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16
12 C -0.11 -1.09 9.70 -39.58 -0.38 -1.47 16
13 C 0.54 11.35 7.41 -10.99 -0.08 11.27 16
14 O -0.54 -13.55 17.29 -14.27 -0.25 -13.80 16
15 N -0.63 -13.43 3.67 -185.05 -0.68 -14.11 16
16 C 0.10 1.93 7.03 -8.52 -0.06 1.87 16
17 C 0.24 5.68 1.59 -91.20 -0.14 5.54 16
18 O -0.57 -14.69 13.54 -35.23 -0.48 -15.16 16
19 C -0.53 -13.08 8.69 -34.44 -0.30 -13.38 16
20 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16
21 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16
22 N -0.90 -22.94 11.01 55.43 0.61 -22.33 16
23 Si 0.91 19.21 29.54 -169.99 -5.02 14.19 16
24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16
25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16
26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16
27 C 0.08 1.86 8.04 -8.46 -0.07 1.79 16
28 H 0.07 0.92 7.32 -51.92 -0.38 0.54 16
29 H 0.07 0.70 7.78 -51.93 -0.40 0.30 16
30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
31 H 0.05 0.53 7.78 -51.93 -0.40 0.13 16
32 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16
33 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16
34 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16
35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16
36 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16
37 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16
38 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16
39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16
40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
41 H 0.09 1.50 8.10 -51.93 -0.42 1.08 16
42 H 0.40 10.41 6.33 45.56 0.29 10.69 16
43 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16
44 H 0.08 1.74 8.10 -51.93 -0.42 1.32 16
45 H 0.06 1.61 8.14 -51.92 -0.42 1.19 16
LS Contribution 380.92 15.07 5.74 5.74
Total: -1.00 -30.31 380.92 -9.85 -40.17
By element:
Atomic # 1 Polarization: 18.25 SS G_CDS: -6.33 Total: 11.92 kcal
Atomic # 6 Polarization: 2.69 SS G_CDS: -2.92 Total: -0.24 kcal
Atomic # 7 Polarization: -36.37 SS G_CDS: -0.07 Total: -36.44 kcal
Atomic # 8 Polarization: -34.10 SS G_CDS: -1.25 Total: -35.35 kcal
Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -30.31 -9.85 -40.17 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000450768513.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.069 kcal
(2) G-P(sol) polarization free energy of solvation -30.312 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.382 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.236 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds