Wall clock time and date at job start Tue Mar 31 2020 13:08:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09001 * 109.46992 * 2 1
4 4 O 1.42898 * 109.47086 * 239.99965 * 2 1 3
5 5 C 1.42899 * 114.00376 * 89.99740 * 4 2 1
6 6 C 1.52997 * 109.46953 * 179.97438 * 5 4 2
7 7 C 1.50700 * 109.46809 * 180.02562 * 6 5 4
8 8 C 1.38241 * 120.00091 * 269.73126 * 7 6 5
9 9 C 1.38235 * 119.99726 * 179.76955 * 8 7 6
10 10 C 1.38231 * 120.00327 * 0.47546 * 9 8 7
11 11 C 1.38238 * 119.99908 * 359.80276 * 10 9 8
12 12 C 1.38235 * 120.00021 * 90.00327 * 7 6 5
13 13 C 1.50692 * 109.47056 * 119.99575 * 2 1 3
14 14 O 1.21281 * 120.00417 * 113.43076 * 13 2 1
15 15 N 1.34785 * 120.00242 * 293.43296 * 13 2 1
16 16 C 1.47061 * 136.05606 * 354.96930 * 15 13 2
17 17 C 1.53492 * 88.05105 * 207.05938 * 16 15 13
18 18 O 1.42904 * 114.20443 * 87.55022 * 17 16 15
19 19 C 1.50696 * 114.20894 * 220.37724 * 17 16 15
20 20 H 1.08000 * 119.99825 * 359.97438 * 19 17 16
21 21 C 1.37877 * 120.00076 * 180.02562 * 19 17 16
22 22 N 1.31514 * 119.99944 * 359.97438 * 21 19 17
23 23 Si 1.86799 * 120.00237 * 179.97438 * 21 19 17
24 24 H 1.48502 * 109.47153 * 359.97438 * 23 21 19
25 25 H 1.48500 * 109.47486 * 119.99597 * 23 21 19
26 26 H 1.48503 * 109.47101 * 239.99995 * 23 21 19
27 27 C 1.47062 * 136.05844 * 174.92584 * 15 13 2
28 28 H 1.09011 * 109.47214 * 305.11949 * 1 2 3
29 29 H 1.09005 * 109.47535 * 65.11465 * 1 2 3
30 30 H 1.09000 * 109.47385 * 185.12117 * 1 2 3
31 31 H 1.08996 * 109.47276 * 300.00320 * 5 4 2
32 32 H 1.09007 * 109.46561 * 60.00014 * 5 4 2
33 33 H 1.08992 * 109.47449 * 299.99928 * 6 5 4
34 34 H 1.09000 * 109.47112 * 60.01094 * 6 5 4
35 35 H 1.07993 * 119.99906 * 359.97438 * 8 7 6
36 36 H 1.08003 * 119.99751 * 180.25187 * 9 8 7
37 37 H 1.08001 * 120.00036 * 179.77013 * 10 9 8
38 38 H 1.08003 * 120.00102 * 179.97438 * 11 10 9
39 39 H 1.07995 * 119.99902 * 359.97438 * 12 7 6
40 40 H 1.09003 * 113.47288 * 321.87002 * 16 15 13
41 41 H 1.08999 * 113.46645 * 92.24954 * 16 15 13
42 42 H 0.96699 * 113.99921 * 180.02562 * 18 17 16
43 43 H 0.97003 * 119.99936 * 180.02562 * 22 21 19
44 44 H 1.08999 * 113.46672 * 267.68998 * 27 15 13
45 45 H 1.09008 * 113.46991 * 38.07271 * 27 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0063 -0.6736 -1.1668
5 6 2.2000 0.1828 -2.2941
6 6 2.7090 -0.6408 -3.4788
7 6 2.9139 0.2626 -4.6675
8 6 1.8810 0.4730 -5.5619
9 6 2.0675 1.3054 -6.6496
10 6 3.2898 1.9196 -6.8484
11 6 4.3244 1.7047 -5.9572
12 6 4.1364 0.8764 -4.8666
13 6 2.0323 -0.7103 1.2305
14 8 2.6282 -1.7612 1.1233
15 7 1.8193 -0.1778 2.4502
16 6 1.2453 1.0703 2.9752
17 6 2.1383 0.8993 4.2118
18 8 3.4426 1.4672 4.0758
19 6 1.4651 1.2504 5.5135
20 1 0.4395 1.5888 5.5169
21 6 2.1587 1.1405 6.7000
22 7 3.4078 0.7289 6.6958
23 14 1.3245 1.5764 8.3135
24 1 -0.0708 2.0100 8.0481
25 1 1.3130 0.3867 9.2022
26 1 2.0681 2.6798 8.9730
27 6 2.0579 -0.5894 3.8417
28 1 -0.3634 0.5913 0.8407
29 1 -0.3634 0.4325 -0.9323
30 1 -0.3634 -1.0235 0.0917
31 1 1.2538 0.6546 -2.5589
32 1 2.9319 0.9513 -2.0450
33 1 3.6553 -1.1121 -3.2138
34 1 1.9774 -1.4094 -3.7280
35 1 0.9275 -0.0104 -5.4090
36 1 1.2593 1.4730 -7.3462
37 1 3.4366 2.5670 -7.7003
38 1 5.2796 2.1843 -6.1127
39 1 4.9445 0.7089 -4.1700
40 1 1.4942 1.9475 2.3780
41 1 0.1802 0.9992 3.1957
42 1 4.0027 1.3574 4.8563
43 1 3.8957 0.6512 7.5306
44 1 1.2094 -1.1029 4.2940
45 1 2.9973 -1.1245 3.9812
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000450768513.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:08:34
Heat of formation + Delta-G solvation = -90.529787 kcal
Electronic energy + Delta-G solvation = -26052.036051 eV
Core-core repulsion = 22228.046092 eV
Total energy + Delta-G solvation = -3823.989959 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.44743 -40.30207 -39.65720 -38.35634 -35.92694 -34.63742 -34.12577 -32.64416
-31.77139 -30.19947 -29.32514 -27.36417 -26.84132 -25.19678 -24.13372 -23.45984
-21.98688 -21.76921 -20.06461 -19.25587 -18.28652 -18.00846 -17.46827 -17.15947
-16.92595 -16.70531 -16.34947 -15.99050 -15.86558 -15.67933 -15.01072 -14.86145
-14.59827 -14.35293 -14.26214 -13.95803 -13.82402 -13.61047 -13.58013 -13.43526
-13.22810 -13.00497 -12.81579 -12.67962 -12.41116 -12.21970 -12.16507 -12.14633
-11.94909 -11.82029 -11.44195 -10.96635 -10.73028 -10.48329 -10.26324 -9.81947
-9.65274 -9.60689 -8.27368 -6.45204 0.40313 0.50120 1.46543 1.50228
1.53606 1.61223 1.67109 2.39885 2.66414 2.94278 2.95513 3.39246
3.72887 3.83678 3.86547 3.92940 3.98205 4.15570 4.17326 4.19144
4.25930 4.31567 4.39849 4.48641 4.60095 4.60360 4.63409 4.64719
4.70551 4.76414 4.90184 4.90826 4.92254 4.97775 5.12896 5.16976
5.18615 5.23468 5.57676 5.63282 5.71152 5.73506 5.88528 6.06189
6.12236 6.63295 6.83927 7.10650 7.29204 7.44603 8.79085
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.027516 B = 0.002178 C = 0.002144
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1017.348137 B =12853.229658 C =13056.467760
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.086 3.914
3 H 0.099 0.901
4 O -0.385 6.385
5 C 0.064 3.936
6 C -0.074 4.074
7 C -0.092 4.092
8 C -0.123 4.123
9 C -0.124 4.124
10 C -0.129 4.129
11 C -0.127 4.127
12 C -0.131 4.131
13 C 0.525 3.475
14 O -0.592 6.592
15 N -0.634 5.634
16 C 0.116 3.884
17 C 0.216 3.784
18 O -0.586 6.586
19 C -0.544 4.544
20 H 0.086 0.914
21 C 0.023 3.977
22 N -0.925 5.925
23 Si 0.974 3.026
24 H -0.258 1.258
25 H -0.284 1.284
26 H -0.282 1.282
27 C 0.078 3.922
28 H 0.086 0.914
29 H 0.097 0.903
30 H 0.056 0.944
31 H 0.073 0.927
32 H 0.049 0.951
33 H 0.069 0.931
34 H 0.085 0.915
35 H 0.135 0.865
36 H 0.144 0.856
37 H 0.143 0.857
38 H 0.137 0.863
39 H 0.122 0.878
40 H 0.085 0.915
41 H 0.119 0.881
42 H 0.388 0.612
43 H 0.275 0.725
44 H 0.089 0.911
45 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.157 4.895 -21.940 23.308
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.025 3.975
3 H 0.117 0.883
4 O -0.304 6.304
5 C -0.012 4.012
6 C -0.111 4.111
7 C -0.092 4.092
8 C -0.141 4.141
9 C -0.142 4.142
10 C -0.146 4.146
11 C -0.145 4.145
12 C -0.150 4.150
13 C 0.316 3.684
14 O -0.473 6.473
15 N -0.368 5.368
16 C -0.006 4.006
17 C 0.175 3.825
18 O -0.398 6.398
19 C -0.582 4.582
20 H 0.105 0.895
21 C -0.177 4.177
22 N -0.566 5.566
23 Si 0.799 3.201
24 H -0.181 1.181
25 H -0.210 1.210
26 H -0.208 1.208
27 C -0.046 4.046
28 H 0.105 0.895
29 H 0.115 0.885
30 H 0.075 0.925
31 H 0.091 0.909
32 H 0.068 0.932
33 H 0.087 0.913
34 H 0.104 0.896
35 H 0.153 0.847
36 H 0.162 0.838
37 H 0.160 0.840
38 H 0.155 0.845
39 H 0.140 0.860
40 H 0.103 0.897
41 H 0.137 0.863
42 H 0.243 0.757
43 H 0.084 0.916
44 H 0.107 0.893
45 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -5.844 4.183 -22.703 23.813
hybrid contribution 0.555 -0.275 1.744 1.850
sum -5.289 3.908 -20.959 21.967
Atomic orbital electron populations
1.22162 0.90838 1.03451 1.05049 1.21804 0.96802 0.95794 0.83127
0.88327 1.87975 1.87015 1.35746 1.19708 1.22717 1.00683 0.92672
0.85112 1.20393 1.02702 0.97130 0.90905 1.19746 0.94684 0.98513
0.96288 1.21319 0.98932 0.99052 0.94753 1.21476 0.98196 0.96704
0.97813 1.21513 0.93266 0.99987 0.99881 1.21430 1.00196 0.98307
0.94580 1.21297 0.97180 0.97836 0.98640 1.20759 0.79034 0.84767
0.83847 1.90623 1.44139 1.26048 1.86534 1.49722 1.60021 1.22728
1.04373 1.23440 0.99133 0.85475 0.92549 1.19908 0.82264 0.87424
0.92921 1.85991 1.27027 1.80731 1.46084 1.21753 1.00021 1.45909
0.90554 0.89548 1.25909 0.95398 0.93163 1.03198 1.69374 1.10915
1.47118 1.29179 0.85249 0.79105 0.77555 0.78162 1.18128 1.20999
1.20814 1.24116 0.99310 1.02597 0.78530 0.89538 0.88463 0.92473
0.90854 0.93242 0.91250 0.89623 0.84678 0.83831 0.83953 0.84480
0.86031 0.89672 0.86289 0.75661 0.91564 0.89327 0.95228
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.65 9.49 71.98 0.68 -2.96 16
2 C 0.09 2.65 2.96 29.84 0.09 2.74 16
3 H 0.10 2.69 7.79 -2.39 -0.02 2.67 16
4 O -0.39 -12.35 9.53 -130.03 -1.24 -13.59 16
5 C 0.06 1.49 5.73 71.98 0.41 1.90 16
6 C -0.07 -1.57 5.72 29.85 0.17 -1.40 16
7 C -0.09 -1.75 5.13 -19.86 -0.10 -1.85 16
8 C -0.12 -1.96 9.70 22.27 0.22 -1.74 16
9 C -0.12 -1.70 10.05 22.27 0.22 -1.47 16
10 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16
11 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16
12 C -0.13 -2.45 9.70 22.27 0.22 -2.24 16
13 C 0.53 22.27 7.41 87.65 0.65 22.92 16
14 O -0.59 -30.68 17.29 15.92 0.28 -30.40 16
15 N -0.63 -26.61 3.67 -858.17 -3.15 -29.76 16
16 C 0.12 4.27 7.03 83.17 0.58 4.85 16
17 C 0.22 10.17 1.59 -11.17 -0.02 10.15 16
18 O -0.59 -30.54 13.54 -148.98 -2.02 -32.56 16
19 C -0.54 -26.13 8.69 25.60 0.22 -25.91 16
20 H 0.09 3.84 7.81 -2.91 -0.02 3.81 16
21 C 0.02 1.13 5.40 84.65 0.46 1.59 16
22 N -0.92 -48.17 11.01 21.45 0.24 -47.93 16
23 Si 0.97 38.89 29.54 68.60 2.03 40.91 16
24 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16
25 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16
26 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16
27 C 0.08 3.66 8.04 83.21 0.67 4.33 16
28 H 0.09 1.80 7.32 -2.38 -0.02 1.78 16
29 H 0.10 1.66 7.78 -2.38 -0.02 1.64 16
30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
31 H 0.07 1.35 7.78 -2.39 -0.02 1.34 16
32 H 0.05 1.15 8.09 -2.38 -0.02 1.13 16
33 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16
34 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16
35 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16
36 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16
37 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16
38 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16
39 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16
40 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16
41 H 0.12 3.66 8.10 -2.39 -0.02 3.64 16
42 H 0.39 21.12 6.33 -74.06 -0.47 20.65 16
43 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16
44 H 0.09 3.93 8.10 -2.39 -0.02 3.91 16
45 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16
Total: -1.00 -67.19 380.92 1.56 -65.62
By element:
Atomic # 1 Polarization: 39.59 SS G_CDS: 0.51 Total: 40.10 kcal
Atomic # 6 Polarization: 2.69 SS G_CDS: 4.92 Total: 7.61 kcal
Atomic # 7 Polarization: -74.78 SS G_CDS: -2.92 Total: -77.69 kcal
Atomic # 8 Polarization: -73.58 SS G_CDS: -2.98 Total: -76.56 kcal
Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.91 kcal
Total: -67.19 1.56 -65.62 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000450768513.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.906 kcal
(2) G-P(sol) polarization free energy of solvation -67.187 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.093 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.624 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.530 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds