Wall clock time and date at job start Tue Mar 31 2020 12:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.46980 * 2 1 4 4 C 1.53005 * 109.46851 * 240.00110 * 2 1 3 5 5 C 1.52998 * 109.46796 * 175.00052 * 4 2 1 6 6 H 1.09001 * 109.82678 * 305.56320 * 5 4 2 7 7 C 1.54385 * 109.82735 * 184.58635 * 5 4 2 8 8 C 1.55304 * 102.25293 * 219.12791 * 7 5 4 9 9 C 1.54939 * 100.94096 * 34.13695 * 8 7 5 10 10 O 1.43233 * 109.83557 * 66.45706 * 5 4 2 11 11 N 1.46499 * 109.47314 * 120.00315 * 2 1 3 12 12 S 1.65600 * 119.99834 * 264.99738 * 11 2 1 13 13 O 1.42099 * 104.27906 * 308.92686 * 12 11 2 14 14 O 1.42101 * 104.27759 * 181.06923 * 12 11 2 15 15 C 1.81396 * 104.45054 * 64.99907 * 12 11 2 16 16 C 1.52996 * 109.47320 * 179.97438 * 15 12 11 17 17 C 1.52996 * 109.47068 * 60.00278 * 16 15 12 18 18 C 1.53000 * 109.47166 * 300.00124 * 16 15 12 19 19 C 1.50702 * 109.47159 * 179.97438 * 16 15 12 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 16 15 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 16 15 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 16 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 16 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 H 1.09010 * 109.46817 * 299.99801 * 1 2 3 28 28 H 1.08992 * 109.47486 * 59.99835 * 1 2 3 29 29 H 1.09005 * 109.47668 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47138 * 294.99914 * 4 2 1 31 31 H 1.09000 * 109.47282 * 54.99861 * 4 2 1 32 32 H 1.09003 * 110.84868 * 337.32174 * 7 5 4 33 33 H 1.09001 * 110.84669 * 100.93826 * 7 5 4 34 34 H 1.08992 * 111.12690 * 276.21409 * 8 7 5 35 35 H 1.09002 * 111.12496 * 152.05319 * 8 7 5 36 36 H 1.09005 * 110.30982 * 204.64269 * 9 8 7 37 37 H 1.08996 * 110.39976 * 82.51258 * 9 8 7 38 38 H 0.97001 * 120.00279 * 84.99808 * 11 2 1 39 39 H 1.09004 * 109.46947 * 59.99849 * 15 12 11 40 40 H 1.09000 * 109.47486 * 300.00277 * 15 12 11 41 41 H 1.09001 * 109.47094 * 180.02562 * 17 16 15 42 42 H 1.09003 * 109.46851 * 300.00074 * 17 16 15 43 43 H 1.09003 * 109.47532 * 60.00149 * 17 16 15 44 44 H 1.09004 * 109.47084 * 299.99410 * 18 16 15 45 45 H 1.08994 * 109.47175 * 59.99981 * 18 16 15 46 46 H 1.09001 * 109.47192 * 179.97438 * 18 16 15 47 47 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3137 6 1 3.8639 0.4334 -1.2582 7 6 4.0788 -1.2378 -2.6287 8 6 5.3730 -1.9610 -2.1663 9 6 4.9651 -2.4108 -0.7408 10 8 4.1499 -1.3442 -0.2298 11 7 2.0183 -0.6907 1.1961 12 16 2.4123 0.1771 2.5504 13 8 3.2876 1.1905 2.0750 14 8 2.8607 -0.8030 3.4765 15 6 0.8409 0.8989 3.0985 16 6 1.0753 1.7339 4.3589 17 6 2.0709 2.8540 4.0506 18 6 1.6394 0.8402 5.4652 19 6 -0.2301 2.3341 4.8138 20 1 -1.1363 2.1390 4.2597 21 6 -0.2685 3.1271 5.9411 22 7 0.8350 3.3643 6.6161 23 14 -1.8878 3.8647 6.5094 24 1 -2.8518 2.7743 6.8048 25 1 -1.6611 4.6713 7.7355 26 1 -2.4379 4.7352 5.4394 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.7515 -1.7715 -1.2057 31 1 1.6053 -0.2618 -2.1370 32 1 3.3573 -1.9508 -3.0277 33 1 4.3075 -0.4644 -3.3620 34 1 6.2176 -1.2729 -2.1345 35 1 5.5917 -2.8194 -2.8015 36 1 5.8500 -2.5424 -0.1179 37 1 4.3925 -3.3373 -0.7841 38 1 2.1110 -1.6562 1.1948 39 1 0.1317 0.1009 3.3185 40 1 0.4387 1.5352 2.3102 41 1 2.2383 3.4487 4.9487 42 1 3.0152 2.4203 3.7213 43 1 1.6690 3.4908 3.2625 44 1 0.9300 0.0423 5.6848 45 1 2.5836 0.4066 5.1359 46 1 1.8068 1.4353 6.3630 47 1 0.8081 3.9225 7.4090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451155130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:11 Heat of formation + Delta-G solvation = -132.687209 kcal Electronic energy + Delta-G solvation = -27099.458752 eV Core-core repulsion = 23409.084661 eV Total energy + Delta-G solvation = -3690.374091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.69234 -36.71653 -36.18995 -36.14780 -35.07298 -32.34586 -31.62115 -31.17777 -29.38380 -26.70656 -25.86325 -25.64033 -25.16906 -22.31169 -21.38923 -20.87588 -19.48505 -18.68493 -17.22065 -16.99129 -16.14500 -15.89256 -15.78801 -15.14814 -14.77174 -14.63566 -14.51930 -13.83618 -13.52845 -13.42227 -13.14691 -12.92990 -12.84546 -12.49282 -12.22685 -12.07184 -11.91479 -11.86074 -11.49121 -11.36329 -11.24799 -11.19744 -11.02848 -10.99485 -10.94458 -10.85877 -10.61175 -10.56469 -10.30903 -10.18403 -9.99304 -9.58171 -9.57088 -9.47810 -9.01577 -8.58641 -8.35091 -5.98430 -4.10310 1.07931 3.29537 3.34912 3.36436 3.42568 3.78180 4.30034 4.38544 4.42398 4.58205 4.68739 4.85381 4.92945 5.00553 5.05123 5.18934 5.24474 5.26851 5.39998 5.45601 5.50786 5.54872 5.59450 5.68296 5.71453 5.74706 5.81534 5.86069 5.90852 6.05637 6.21833 6.39542 6.49988 6.78146 6.87488 6.99635 7.05959 7.11703 7.38281 7.45529 7.58124 7.72469 8.04351 8.15900 8.39078 8.87908 9.54625 11.02784 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027782 B = 0.003605 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.604366 B = 7766.189768 C = 8246.473399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.149 3.851 3 H 0.090 0.910 4 C -0.131 4.131 5 C 0.079 3.921 6 H 0.084 0.916 7 C -0.152 4.152 8 C -0.157 4.157 9 C 0.045 3.955 10 O -0.361 6.361 11 N -1.110 6.110 12 S 2.601 3.399 13 O -0.964 6.964 14 O -0.969 6.969 15 C -0.590 4.590 16 C 0.082 3.918 17 C -0.163 4.163 18 C -0.164 4.164 19 C -0.502 4.502 20 H 0.057 0.943 21 C 0.064 3.936 22 N -0.884 5.884 23 Si 0.895 3.105 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.412 0.588 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.029 0.971 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.028 0.972 46 H 0.094 0.906 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 -9.894 -18.824 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.041 3.959 3 H 0.108 0.892 4 C -0.170 4.170 5 C 0.021 3.979 6 H 0.102 0.898 7 C -0.189 4.189 8 C -0.195 4.195 9 C -0.032 4.032 10 O -0.280 6.280 11 N -0.867 5.867 12 S 2.697 3.303 13 O -0.954 6.954 14 O -0.959 6.959 15 C -0.722 4.722 16 C 0.080 3.920 17 C -0.220 4.220 18 C -0.221 4.221 19 C -0.541 4.541 20 H 0.076 0.924 21 C -0.138 4.138 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.245 0.755 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.112 0.888 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.113 0.887 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.330 -9.487 -18.100 20.889 hybrid contribution -1.627 -0.030 -0.067 1.628 sum 2.703 -9.517 -18.166 20.686 Atomic orbital electron populations 1.22507 0.95682 1.02796 1.03061 1.20668 0.93239 0.96793 0.85157 0.89236 1.22273 0.95163 1.01775 0.97809 1.22791 0.92682 0.96860 0.85520 0.89804 1.23198 0.97290 1.00459 0.97975 1.23257 0.98267 1.00887 0.97051 1.23387 0.94848 0.90987 0.93943 1.88596 1.64737 1.44587 1.30096 1.55654 1.84126 1.19488 1.27388 1.05346 0.77961 0.74313 0.72637 1.93518 1.62286 1.60084 1.79545 1.93528 1.80499 1.59736 1.62169 1.30690 1.19644 1.11344 1.10545 1.17899 0.96734 0.90850 0.86487 1.22260 0.96391 1.00602 1.02776 1.22267 0.97613 0.98855 1.03389 1.20927 0.92719 1.29977 1.10480 0.92428 1.24941 0.96406 0.96109 0.96305 1.69802 1.26328 1.38026 1.18045 0.86612 0.83832 0.79167 0.78075 1.20318 1.21219 1.20308 0.91291 0.91594 0.91997 0.90883 0.89856 0.90539 0.90147 0.90385 0.90267 0.89903 0.92497 0.75498 0.86511 0.86584 0.88796 0.95262 0.94585 0.94572 0.95337 0.88720 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.48 37.16 0.35 -1.54 16 2 C 0.15 1.80 2.81 -67.93 -0.19 1.61 16 3 H 0.09 1.17 7.48 -51.93 -0.39 0.78 16 4 C -0.13 -1.23 4.47 -26.73 -0.12 -1.35 16 5 C 0.08 0.85 3.52 -26.01 -0.09 0.76 16 6 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 7 C -0.15 -1.16 6.54 -24.78 -0.16 -1.32 16 8 C -0.16 -1.22 7.16 -24.49 -0.18 -1.39 16 9 C 0.05 0.45 7.78 38.18 0.30 0.75 16 10 O -0.36 -4.83 9.20 -35.23 -0.32 -5.16 16 11 N -1.11 -16.22 3.95 -4.89 -0.02 -16.24 16 12 S 2.60 51.07 4.47 -107.50 -0.48 50.59 16 13 O -0.96 -21.26 15.01 -57.54 -0.86 -22.13 16 14 O -0.97 -21.75 15.70 -57.54 -0.90 -22.66 16 15 C -0.59 -11.90 4.16 37.16 0.15 -11.74 16 16 C 0.08 2.05 0.52 -155.66 -0.08 1.97 16 17 C -0.16 -4.11 7.78 37.16 0.29 -3.82 16 18 C -0.16 -4.18 7.77 37.16 0.29 -3.89 16 19 C -0.50 -13.41 8.01 -34.44 -0.28 -13.68 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 22 N -0.88 -24.56 9.35 55.43 0.52 -24.04 16 23 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H 0.07 0.81 5.78 -51.92 -0.30 0.51 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.41 5.48 8.41 -34.47 -0.29 5.19 16 39 H 0.12 2.16 8.14 -51.92 -0.42 1.74 16 40 H 0.12 2.11 6.77 -51.92 -0.35 1.76 16 41 H 0.09 2.55 6.08 -51.93 -0.32 2.23 16 42 H 0.03 0.71 5.46 -51.93 -0.28 0.42 16 43 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.70 5.46 -51.93 -0.28 0.41 16 46 H 0.09 2.58 6.06 -51.93 -0.31 2.27 16 47 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -33.13 364.94 -9.37 -42.50 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.97 Total: 7.78 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 0.19 Total: -32.01 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.50 Total: -40.28 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -2.09 Total: -49.94 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 51.07 SS G_CDS: -0.48 Total: 50.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.13 -9.37 -42.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451155130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.189 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds