Wall clock time and date at job start Tue Mar 31 2020 12:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.46980 * 2 1 4 4 C 1.53005 * 109.46851 * 240.00110 * 2 1 3 5 5 C 1.52998 * 109.46796 * 175.00052 * 4 2 1 6 6 H 1.09001 * 109.82678 * 305.56320 * 5 4 2 7 7 C 1.54385 * 109.82735 * 184.58635 * 5 4 2 8 8 C 1.55304 * 102.25293 * 219.12791 * 7 5 4 9 9 C 1.54939 * 100.94096 * 34.13695 * 8 7 5 10 10 O 1.43233 * 109.83557 * 66.45706 * 5 4 2 11 11 N 1.46499 * 109.47314 * 120.00315 * 2 1 3 12 12 S 1.65600 * 119.99834 * 264.99738 * 11 2 1 13 13 O 1.42099 * 104.27906 * 308.92686 * 12 11 2 14 14 O 1.42101 * 104.27759 * 181.06923 * 12 11 2 15 15 C 1.81396 * 104.45054 * 64.99907 * 12 11 2 16 16 C 1.52996 * 109.47320 * 179.97438 * 15 12 11 17 17 C 1.52996 * 109.47068 * 60.00278 * 16 15 12 18 18 C 1.53000 * 109.47166 * 300.00124 * 16 15 12 19 19 C 1.50702 * 109.47159 * 179.97438 * 16 15 12 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 16 15 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 16 15 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 16 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 16 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 H 1.09010 * 109.46817 * 299.99801 * 1 2 3 28 28 H 1.08992 * 109.47486 * 59.99835 * 1 2 3 29 29 H 1.09005 * 109.47668 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47138 * 294.99914 * 4 2 1 31 31 H 1.09000 * 109.47282 * 54.99861 * 4 2 1 32 32 H 1.09003 * 110.84868 * 337.32174 * 7 5 4 33 33 H 1.09001 * 110.84669 * 100.93826 * 7 5 4 34 34 H 1.08992 * 111.12690 * 276.21409 * 8 7 5 35 35 H 1.09002 * 111.12496 * 152.05319 * 8 7 5 36 36 H 1.09005 * 110.30982 * 204.64269 * 9 8 7 37 37 H 1.08996 * 110.39976 * 82.51258 * 9 8 7 38 38 H 0.97001 * 120.00279 * 84.99808 * 11 2 1 39 39 H 1.09004 * 109.46947 * 59.99849 * 15 12 11 40 40 H 1.09000 * 109.47486 * 300.00277 * 15 12 11 41 41 H 1.09001 * 109.47094 * 180.02562 * 17 16 15 42 42 H 1.09003 * 109.46851 * 300.00074 * 17 16 15 43 43 H 1.09003 * 109.47532 * 60.00149 * 17 16 15 44 44 H 1.09004 * 109.47084 * 299.99410 * 18 16 15 45 45 H 1.08994 * 109.47175 * 59.99981 * 18 16 15 46 46 H 1.09001 * 109.47192 * 179.97438 * 18 16 15 47 47 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3137 6 1 3.8639 0.4334 -1.2582 7 6 4.0788 -1.2378 -2.6287 8 6 5.3730 -1.9610 -2.1663 9 6 4.9651 -2.4108 -0.7408 10 8 4.1499 -1.3442 -0.2298 11 7 2.0183 -0.6907 1.1961 12 16 2.4123 0.1771 2.5504 13 8 3.2876 1.1905 2.0750 14 8 2.8607 -0.8030 3.4765 15 6 0.8409 0.8989 3.0985 16 6 1.0753 1.7339 4.3589 17 6 2.0709 2.8540 4.0506 18 6 1.6394 0.8402 5.4652 19 6 -0.2301 2.3341 4.8138 20 1 -1.1363 2.1390 4.2597 21 6 -0.2685 3.1271 5.9411 22 7 0.8350 3.3643 6.6161 23 14 -1.8878 3.8647 6.5094 24 1 -2.8518 2.7743 6.8048 25 1 -1.6611 4.6713 7.7355 26 1 -2.4379 4.7352 5.4394 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.7515 -1.7715 -1.2057 31 1 1.6053 -0.2618 -2.1370 32 1 3.3573 -1.9508 -3.0277 33 1 4.3075 -0.4644 -3.3620 34 1 6.2176 -1.2729 -2.1345 35 1 5.5917 -2.8194 -2.8015 36 1 5.8500 -2.5424 -0.1179 37 1 4.3925 -3.3373 -0.7841 38 1 2.1110 -1.6562 1.1948 39 1 0.1317 0.1009 3.3185 40 1 0.4387 1.5352 2.3102 41 1 2.2383 3.4487 4.9487 42 1 3.0152 2.4203 3.7213 43 1 1.6690 3.4908 3.2625 44 1 0.9300 0.0423 5.6848 45 1 2.5836 0.4066 5.1359 46 1 1.8068 1.4353 6.3630 47 1 0.8081 3.9225 7.4090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451155130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:10 Heat of formation + Delta-G solvation = -155.365218 kcal Electronic energy + Delta-G solvation = -27100.442145 eV Core-core repulsion = 23409.084661 eV Total energy + Delta-G solvation = -3691.357483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.47208 -38.11710 -38.08844 -37.43845 -36.76648 -33.63372 -33.10611 -32.06830 -30.29760 -28.36570 -27.69532 -27.23858 -26.68242 -23.09895 -22.12154 -21.73766 -21.32643 -20.21106 -18.75917 -17.89866 -17.78114 -17.03959 -16.97786 -16.73761 -16.59316 -15.90437 -15.57647 -15.01692 -14.75908 -14.55251 -14.43879 -14.26400 -14.17897 -13.88101 -13.76498 -13.34620 -13.06976 -12.94716 -12.83920 -12.79132 -12.74938 -12.55244 -12.46393 -12.43629 -12.17444 -12.13501 -12.09246 -11.94257 -11.87500 -11.63577 -11.56434 -11.41864 -11.31920 -10.64223 -10.40683 -10.38319 -10.09748 -8.01889 -6.20968 -0.49224 1.45790 1.46220 1.53679 2.05789 2.45103 2.99025 3.03809 3.20062 3.42919 3.65940 3.70738 4.01306 4.04793 4.09542 4.18455 4.24079 4.27947 4.45379 4.50164 4.55441 4.59768 4.76727 4.83989 4.86136 4.87133 4.91255 4.93026 4.95744 4.99705 5.06174 5.08276 5.10224 5.17158 5.30923 5.37109 5.44952 5.50774 5.51005 5.64648 5.96219 6.11604 6.29561 6.34015 6.35533 6.83633 7.47158 8.97990 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027782 B = 0.003605 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.604366 B = 7766.189768 C = 8246.473399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.138 3.862 3 H 0.075 0.925 4 C -0.123 4.123 5 C 0.066 3.934 6 H 0.062 0.938 7 C -0.142 4.142 8 C -0.152 4.152 9 C 0.034 3.966 10 O -0.398 6.398 11 N -1.093 6.093 12 S 2.615 3.385 13 O -0.993 6.993 14 O -1.002 7.002 15 C -0.588 4.588 16 C 0.070 3.930 17 C -0.158 4.158 18 C -0.160 4.160 19 C -0.518 4.518 20 H 0.064 0.936 21 C 0.016 3.984 22 N -0.909 5.909 23 Si 0.956 3.044 24 H -0.272 1.272 25 H -0.288 1.288 26 H -0.270 1.270 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.420 0.580 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.070 0.930 42 H 0.030 0.970 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.029 0.971 46 H 0.071 0.929 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 -10.896 -21.409 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.031 3.969 3 H 0.093 0.907 4 C -0.162 4.162 5 C 0.009 3.991 6 H 0.080 0.920 7 C -0.179 4.179 8 C -0.190 4.190 9 C -0.043 4.043 10 O -0.318 6.318 11 N -0.854 5.854 12 S 2.711 3.289 13 O -0.983 6.983 14 O -0.992 6.992 15 C -0.720 4.720 16 C 0.068 3.932 17 C -0.215 4.215 18 C -0.218 4.218 19 C -0.557 4.557 20 H 0.083 0.917 21 C -0.183 4.183 22 N -0.548 5.548 23 Si 0.782 3.218 24 H -0.197 1.197 25 H -0.214 1.214 26 H -0.195 1.195 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.256 0.744 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.089 0.911 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.624 -10.495 -20.692 23.350 hybrid contribution -1.047 0.261 0.695 1.284 sum 1.577 -10.234 -19.997 22.519 Atomic orbital electron populations 1.22502 0.93975 1.03889 1.03533 1.21003 0.94594 0.96240 0.85083 0.90716 1.22276 0.94106 1.02457 0.97338 1.22955 0.93674 0.95865 0.86646 0.92000 1.23175 0.97304 1.00954 0.96508 1.23247 0.98204 1.01591 0.95931 1.23577 0.94593 0.90900 0.95185 1.88549 1.65492 1.45654 1.32145 1.55207 1.83980 1.19608 1.26614 1.04592 0.77495 0.73756 0.73013 1.93478 1.63332 1.61401 1.80091 1.93472 1.81206 1.60413 1.64123 1.30604 1.20680 1.11698 1.09038 1.17907 0.95940 0.91123 0.88254 1.22184 0.96880 1.00768 1.01714 1.22205 0.97875 0.98713 1.02961 1.21279 0.93583 1.30101 1.10735 0.91750 1.25714 0.99397 0.96636 0.96557 1.69952 1.28128 1.38463 1.18259 0.85643 0.80134 0.78465 0.77552 1.19682 1.21366 1.19528 0.92850 0.89113 0.90600 0.89558 0.86745 0.88622 0.88901 0.91082 0.87969 0.90741 0.91150 0.74429 0.84765 0.84586 0.91131 0.95166 0.94069 0.94223 0.95266 0.90988 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 9.48 71.98 0.68 -2.53 16 2 C 0.14 3.05 2.81 44.99 0.13 3.17 16 3 H 0.07 1.89 7.48 -2.39 -0.02 1.87 16 4 C -0.12 -1.94 4.47 30.60 0.14 -1.80 16 5 C 0.07 1.32 3.52 31.06 0.11 1.43 16 6 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 7 C -0.14 -1.77 6.54 31.86 0.21 -1.56 16 8 C -0.15 -2.06 7.16 32.05 0.23 -1.83 16 9 C 0.03 0.64 7.78 72.64 0.56 1.21 16 10 O -0.40 -10.45 9.20 -148.98 -1.37 -11.82 16 11 N -1.09 -30.77 3.95 -169.39 -0.67 -31.44 16 12 S 2.61 102.77 4.47 -56.49 -0.25 102.51 16 13 O -0.99 -44.53 15.01 -127.65 -1.92 -46.44 16 14 O -1.00 -45.50 15.70 -127.65 -2.00 -47.51 16 15 C -0.59 -23.30 4.16 71.98 0.30 -23.00 16 16 C 0.07 3.49 0.52 -52.93 -0.03 3.46 16 17 C -0.16 -8.13 7.78 71.98 0.56 -7.57 16 18 C -0.16 -8.32 7.77 71.98 0.56 -7.76 16 19 C -0.52 -27.48 8.01 25.60 0.21 -27.28 16 20 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 21 C 0.02 0.87 5.15 84.66 0.44 1.31 16 22 N -0.91 -51.44 9.35 21.45 0.20 -51.24 16 23 Si 0.96 42.58 29.54 68.60 2.03 44.60 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H 0.05 1.13 5.78 -2.38 -0.01 1.11 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 0.85 7.85 -2.39 -0.02 0.83 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.42 10.63 8.41 -96.75 -0.81 9.82 16 39 H 0.13 4.79 8.14 -2.39 -0.02 4.77 16 40 H 0.14 4.77 6.77 -2.39 -0.02 4.76 16 41 H 0.07 3.95 6.08 -2.39 -0.01 3.93 16 42 H 0.03 1.51 5.46 -2.39 -0.01 1.49 16 43 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 46 H 0.07 4.05 6.06 -2.39 -0.01 4.04 16 47 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -72.41 364.94 0.24 -72.16 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.14 Total: 31.93 kcal Atomic # 6 Polarization: -66.85 SS G_CDS: 4.09 Total: -62.76 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -0.47 Total: -82.68 kcal Atomic # 8 Polarization: -100.48 SS G_CDS: -5.29 Total: -105.77 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 102.77 SS G_CDS: -0.25 Total: 102.51 kcal Total: -72.41 0.24 -72.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451155130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.203 kcal (2) G-P(sol) polarization free energy of solvation -72.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds