Wall clock time and date at job start Tue Mar 31 2020 12:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99810 * 2 1 4 4 C 1.53003 * 109.47347 * 59.99972 * 3 2 1 5 5 C 1.52996 * 109.47356 * 299.99799 * 3 2 1 6 6 C 1.53008 * 109.46777 * 179.97438 * 3 2 1 7 7 C 1.52992 * 109.47426 * 63.70203 * 6 3 2 8 8 H 1.09003 * 109.46955 * 53.29327 * 7 6 3 9 9 C 1.53003 * 109.47162 * 293.29552 * 7 6 3 10 10 N 1.46494 * 109.47329 * 173.29668 * 7 6 3 11 11 S 1.65611 * 119.99798 * 216.21642 * 10 7 6 12 12 O 1.42099 * 104.27649 * 307.09846 * 11 10 7 13 13 O 1.42100 * 104.27455 * 179.24458 * 11 10 7 14 14 C 1.81391 * 104.45069 * 63.17078 * 11 10 7 15 15 C 1.52999 * 109.47047 * 185.78090 * 14 11 10 16 16 C 1.50700 * 115.54932 * 302.93236 * 15 14 11 17 17 H 1.07993 * 120.00179 * 94.94601 * 16 15 14 18 18 C 1.37881 * 119.99820 * 274.66739 * 16 15 14 19 19 N 1.31521 * 120.00204 * 355.52732 * 18 16 15 20 20 Si 1.86801 * 120.00001 * 175.53267 * 18 16 15 21 21 H 1.48498 * 109.47168 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47479 * 119.99823 * 20 18 16 23 23 H 1.48508 * 109.46599 * 239.99869 * 20 18 16 24 24 C 1.53004 * 117.49996 * 88.60397 * 15 14 11 25 25 C 1.53005 * 117.50137 * 157.26294 * 15 14 11 26 26 H 1.08998 * 109.47550 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47378 * 300.00461 * 1 2 3 28 28 H 1.09010 * 109.46938 * 59.99911 * 1 2 3 29 29 H 1.09000 * 109.47209 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46970 * 300.00019 * 4 3 2 31 31 H 1.09007 * 109.46803 * 59.99551 * 4 3 2 32 32 H 1.09004 * 109.47019 * 306.76020 * 5 3 2 33 33 H 1.08993 * 109.47495 * 66.76153 * 5 3 2 34 34 H 1.08997 * 109.47373 * 186.76577 * 5 3 2 35 35 H 1.09001 * 109.47085 * 303.69851 * 6 3 2 36 36 H 1.08999 * 109.46704 * 183.70613 * 6 3 2 37 37 H 1.09001 * 109.46849 * 68.87069 * 9 7 6 38 38 H 1.09003 * 109.47174 * 188.87356 * 9 7 6 39 39 H 1.09003 * 109.46882 * 308.87859 * 9 7 6 40 40 H 0.97002 * 120.00533 * 36.21055 * 10 7 6 41 41 H 1.09005 * 109.47591 * 65.77943 * 14 11 10 42 42 H 1.09005 * 109.47578 * 305.77867 * 14 11 10 43 43 H 0.96999 * 120.00185 * 185.00201 * 19 18 16 44 44 H 1.09002 * 117.49491 * 215.00422 * 24 15 14 45 45 H 1.09002 * 117.49558 * 0.02562 * 24 15 14 46 46 H 1.09011 * 117.49355 * 359.97438 * 25 15 14 47 47 H 1.08993 * 117.50152 * 144.97323 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1846 0.0006 7 6 3.9940 0.5071 -1.2922 8 1 3.5769 1.0377 -2.1481 9 6 3.5100 -0.9443 -1.3067 10 7 5.4568 0.5347 -1.3658 11 16 6.2085 0.7440 -2.8266 12 8 5.6405 -0.2574 -3.6595 13 8 7.5942 0.7358 -2.5119 14 6 5.6889 2.3945 -3.3707 15 6 6.2068 2.6509 -4.7874 16 6 7.6987 2.5342 -4.9651 17 1 8.1309 1.6048 -5.3054 18 6 8.5114 3.6157 -4.6987 19 7 7.9794 4.7740 -4.3747 20 14 10.3681 3.4357 -4.7982 21 1 10.7106 2.0419 -5.1793 22 1 10.9024 4.3737 -5.8178 23 1 10.9671 3.7483 -3.4757 24 6 5.3198 2.2116 -5.9541 25 6 5.4751 3.6992 -5.6281 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 2.0024 3.0604 1.2494 30 1 0.4721 2.1508 1.2492 31 1 1.8803 1.5238 2.1393 32 1 1.7735 1.4670 -2.1351 33 1 0.4873 2.2559 -1.1909 34 1 2.0940 3.0122 -1.3118 35 1 3.8523 0.5877 0.8559 36 1 3.9785 2.1783 0.0671 37 1 2.4252 -0.9645 -1.4108 38 1 3.9655 -1.4709 -2.1454 39 1 3.7945 -1.4315 -0.3740 40 1 5.9851 0.4306 -0.5590 41 1 6.0962 3.1454 -2.6935 42 1 4.6005 2.4530 -3.3656 43 1 8.5463 5.5525 -4.2583 44 1 5.8154 1.8381 -6.8502 45 1 4.3671 1.7403 -5.7123 46 1 4.6244 4.2058 -5.1720 47 1 6.0728 4.3046 -6.3094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451243316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:34 Heat of formation + Delta-G solvation = -104.439446 kcal Electronic energy + Delta-G solvation = -26989.524192 eV Core-core repulsion = 23300.375016 eV Total energy + Delta-G solvation = -3689.149176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.64014 -36.72283 -36.48030 -35.96307 -34.97815 -33.10530 -32.01035 -29.79731 -28.20691 -27.73430 -27.26965 -26.22723 -25.43935 -21.67523 -21.15031 -19.99109 -19.66811 -18.60392 -17.12989 -16.51470 -16.38028 -16.13411 -15.45475 -15.26613 -14.99307 -14.64075 -14.29679 -13.98400 -13.83561 -13.71691 -13.23001 -13.10437 -12.77314 -12.52616 -12.21213 -12.13880 -12.05600 -11.80605 -11.71685 -11.59120 -11.34125 -11.22354 -11.15510 -11.05140 -10.98227 -10.91540 -10.71993 -10.50835 -10.42453 -10.30453 -10.06384 -9.64996 -9.60192 -9.17672 -8.99561 -8.51247 -8.06691 -6.11550 -4.24474 1.15738 3.31514 3.40124 3.47628 3.48802 3.62383 4.40694 4.47871 4.56864 4.66021 4.79671 4.96864 5.04551 5.12254 5.15947 5.17485 5.20884 5.28084 5.30936 5.35544 5.41148 5.52105 5.56284 5.63082 5.70988 5.79787 5.84081 5.87120 5.99158 6.02307 6.09769 6.25530 6.27533 6.37879 6.50806 6.63956 6.65248 6.74420 7.01097 7.05928 7.23552 7.38863 7.47638 7.81767 8.21380 8.82230 9.48646 10.94945 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.003947 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.057849 B = 7093.170269 C = 7337.095847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.368 6.368 3 C 0.113 3.887 4 C -0.177 4.177 5 C -0.188 4.188 6 C -0.114 4.114 7 C 0.152 3.848 8 H 0.081 0.919 9 C -0.168 4.168 10 N -1.131 6.131 11 S 2.611 3.389 12 O -0.971 6.971 13 O -0.952 6.952 14 C -0.557 4.557 15 C 0.040 3.960 16 C -0.518 4.518 17 H 0.068 0.932 18 C 0.083 3.917 19 N -0.874 5.874 20 Si 0.893 3.107 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.279 1.279 24 C -0.207 4.207 25 C -0.134 4.134 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.410 0.590 41 H 0.129 0.871 42 H 0.095 0.905 43 H 0.262 0.738 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.261 -4.159 10.745 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.287 6.287 3 C 0.073 3.927 4 C -0.234 4.234 5 C -0.245 4.245 6 C -0.153 4.153 7 C 0.045 3.955 8 H 0.098 0.902 9 C -0.226 4.226 10 N -0.887 5.887 11 S 2.708 3.292 12 O -0.961 6.961 13 O -0.942 6.942 14 C -0.690 4.690 15 C 0.038 3.962 16 C -0.555 4.555 17 H 0.086 0.914 18 C -0.122 4.122 19 N -0.510 5.510 20 Si 0.720 3.280 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.205 1.205 24 C -0.244 4.244 25 C -0.174 4.174 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.242 0.758 41 H 0.147 0.853 42 H 0.114 0.886 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.629 -4.793 10.295 18.520 hybrid contribution 0.523 1.015 0.552 1.268 sum -14.107 -3.779 10.847 18.192 Atomic orbital electron populations 1.22782 0.82242 1.02469 1.00072 1.88107 1.18914 1.26938 1.94745 1.21445 0.93436 0.83451 0.94367 1.22407 1.01726 1.01123 0.98179 1.22562 1.01850 1.01540 0.98550 1.21989 0.92368 1.02182 0.98764 1.20723 0.79418 0.97445 0.97940 0.90151 1.22420 1.02719 0.95279 1.02194 1.56146 1.14205 1.90816 1.27497 1.04996 0.73887 0.77710 0.72628 1.93494 1.79524 1.55690 1.67358 1.93544 1.30721 1.87589 1.82327 1.30002 1.07457 1.21654 1.09859 1.18266 0.93117 1.01457 0.83385 1.20585 0.88159 0.99478 1.47327 0.91365 1.24948 0.99065 0.95041 0.93139 1.70011 1.35556 0.99669 1.45717 0.86503 0.85000 0.78698 0.77836 1.19089 1.21008 1.20485 1.23161 1.00489 0.98925 1.01803 1.22496 1.00665 0.90203 1.03991 0.89924 0.94071 0.93795 0.91283 0.92158 0.91726 0.90972 0.92147 0.90920 0.90344 0.89630 0.89902 0.91775 0.92817 0.75790 0.85285 0.88610 0.92833 0.89626 0.91068 0.91811 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.21 101.05 1.03 1.19 16 2 O -0.37 -3.69 7.02 -35.23 -0.25 -3.94 16 3 C 0.11 1.06 0.81 -90.62 -0.07 0.99 16 4 C -0.18 -1.38 8.25 37.16 0.31 -1.07 16 5 C -0.19 -1.73 7.37 37.16 0.27 -1.46 16 6 C -0.11 -1.20 4.34 -26.73 -0.12 -1.31 16 7 C 0.15 2.01 2.51 -67.94 -0.17 1.84 16 8 H 0.08 1.06 4.93 -51.93 -0.26 0.80 16 9 C -0.17 -2.24 8.62 37.16 0.32 -1.92 16 10 N -1.13 -17.26 5.35 -4.90 -0.03 -17.28 16 11 S 2.61 53.83 4.96 -107.50 -0.53 53.30 16 12 O -0.97 -21.84 17.20 -57.54 -0.99 -22.83 16 13 O -0.95 -23.20 17.46 -57.54 -1.00 -24.21 16 14 C -0.56 -11.59 5.87 37.16 0.22 -11.37 16 15 C 0.04 0.98 1.52 -155.66 -0.24 0.74 16 16 C -0.52 -14.33 7.69 -34.44 -0.26 -14.60 16 17 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 18 C 0.08 2.30 5.43 -17.82 -0.10 2.20 16 19 N -0.87 -24.17 12.64 55.43 0.70 -23.47 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.21 -4.54 9.94 -26.69 -0.27 -4.81 16 25 C -0.13 -3.07 9.16 -26.69 -0.24 -3.32 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.27 6.42 -51.93 -0.33 -0.06 16 28 H 0.04 0.31 6.57 -51.92 -0.34 -0.03 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.42 6.54 -51.93 -0.34 0.08 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.73 6.62 -51.93 -0.34 0.38 16 33 H 0.06 0.47 6.92 -51.93 -0.36 0.12 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.02 5.81 -51.93 -0.30 0.72 16 38 H 0.06 0.99 7.48 -51.93 -0.39 0.60 16 39 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 40 H 0.41 5.44 8.81 -34.48 -0.30 5.14 16 41 H 0.13 2.75 8.14 -51.92 -0.42 2.32 16 42 H 0.10 1.65 7.16 -51.92 -0.37 1.27 16 43 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 44 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 47 H 0.09 2.18 8.14 -51.93 -0.42 1.75 16 LS Contribution 378.22 15.07 5.70 5.70 Total: -1.00 -32.94 378.22 -8.69 -41.63 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.95 Total: 7.10 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 0.68 Total: -32.90 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.67 Total: -40.75 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -2.24 Total: -50.97 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 53.83 SS G_CDS: -0.53 Total: 53.30 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.94 -8.69 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451243316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.810 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds