Wall clock time and date at job start Tue Mar 31 2020 12:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99810 * 2 1 4 4 C 1.53003 * 109.47347 * 59.99972 * 3 2 1 5 5 C 1.52996 * 109.47356 * 299.99799 * 3 2 1 6 6 C 1.53008 * 109.46777 * 179.97438 * 3 2 1 7 7 C 1.52992 * 109.47426 * 63.70203 * 6 3 2 8 8 H 1.09003 * 109.46955 * 53.29327 * 7 6 3 9 9 C 1.53003 * 109.47162 * 293.29552 * 7 6 3 10 10 N 1.46494 * 109.47329 * 173.29668 * 7 6 3 11 11 S 1.65611 * 119.99798 * 216.21642 * 10 7 6 12 12 O 1.42099 * 104.27649 * 307.09846 * 11 10 7 13 13 O 1.42100 * 104.27455 * 179.24458 * 11 10 7 14 14 C 1.81391 * 104.45069 * 63.17078 * 11 10 7 15 15 C 1.52999 * 109.47047 * 185.78090 * 14 11 10 16 16 C 1.50700 * 115.54932 * 302.93236 * 15 14 11 17 17 H 1.07993 * 120.00179 * 94.94601 * 16 15 14 18 18 C 1.37881 * 119.99820 * 274.66739 * 16 15 14 19 19 N 1.31521 * 120.00204 * 355.52732 * 18 16 15 20 20 Si 1.86801 * 120.00001 * 175.53267 * 18 16 15 21 21 H 1.48498 * 109.47168 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47479 * 119.99823 * 20 18 16 23 23 H 1.48508 * 109.46599 * 239.99869 * 20 18 16 24 24 C 1.53004 * 117.49996 * 88.60397 * 15 14 11 25 25 C 1.53005 * 117.50137 * 157.26294 * 15 14 11 26 26 H 1.08998 * 109.47550 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47378 * 300.00461 * 1 2 3 28 28 H 1.09010 * 109.46938 * 59.99911 * 1 2 3 29 29 H 1.09000 * 109.47209 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46970 * 300.00019 * 4 3 2 31 31 H 1.09007 * 109.46803 * 59.99551 * 4 3 2 32 32 H 1.09004 * 109.47019 * 306.76020 * 5 3 2 33 33 H 1.08993 * 109.47495 * 66.76153 * 5 3 2 34 34 H 1.08997 * 109.47373 * 186.76577 * 5 3 2 35 35 H 1.09001 * 109.47085 * 303.69851 * 6 3 2 36 36 H 1.08999 * 109.46704 * 183.70613 * 6 3 2 37 37 H 1.09001 * 109.46849 * 68.87069 * 9 7 6 38 38 H 1.09003 * 109.47174 * 188.87356 * 9 7 6 39 39 H 1.09003 * 109.46882 * 308.87859 * 9 7 6 40 40 H 0.97002 * 120.00533 * 36.21055 * 10 7 6 41 41 H 1.09005 * 109.47591 * 65.77943 * 14 11 10 42 42 H 1.09005 * 109.47578 * 305.77867 * 14 11 10 43 43 H 0.96999 * 120.00185 * 185.00201 * 19 18 16 44 44 H 1.09002 * 117.49491 * 215.00422 * 24 15 14 45 45 H 1.09002 * 117.49558 * 0.02562 * 24 15 14 46 46 H 1.09011 * 117.49355 * 359.97438 * 25 15 14 47 47 H 1.08993 * 117.50152 * 144.97323 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1846 0.0006 7 6 3.9940 0.5071 -1.2922 8 1 3.5769 1.0377 -2.1481 9 6 3.5100 -0.9443 -1.3067 10 7 5.4568 0.5347 -1.3658 11 16 6.2085 0.7440 -2.8266 12 8 5.6405 -0.2574 -3.6595 13 8 7.5942 0.7358 -2.5119 14 6 5.6889 2.3945 -3.3707 15 6 6.2068 2.6509 -4.7874 16 6 7.6987 2.5342 -4.9651 17 1 8.1309 1.6048 -5.3054 18 6 8.5114 3.6157 -4.6987 19 7 7.9794 4.7740 -4.3747 20 14 10.3681 3.4357 -4.7982 21 1 10.7106 2.0419 -5.1793 22 1 10.9024 4.3737 -5.8178 23 1 10.9671 3.7483 -3.4757 24 6 5.3198 2.2116 -5.9541 25 6 5.4751 3.6992 -5.6281 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 2.0024 3.0604 1.2494 30 1 0.4721 2.1508 1.2492 31 1 1.8803 1.5238 2.1393 32 1 1.7735 1.4670 -2.1351 33 1 0.4873 2.2559 -1.1909 34 1 2.0940 3.0122 -1.3118 35 1 3.8523 0.5877 0.8559 36 1 3.9785 2.1783 0.0671 37 1 2.4252 -0.9645 -1.4108 38 1 3.9655 -1.4709 -2.1454 39 1 3.7945 -1.4315 -0.3740 40 1 5.9851 0.4306 -0.5590 41 1 6.0962 3.1454 -2.6935 42 1 4.6005 2.4530 -3.3656 43 1 8.5463 5.5525 -4.2583 44 1 5.8154 1.8381 -6.8502 45 1 4.3671 1.7403 -5.7123 46 1 4.6244 4.2058 -5.1720 47 1 6.0728 4.3046 -6.3094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451243316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:33 Heat of formation + Delta-G solvation = -127.151388 kcal Electronic energy + Delta-G solvation = -26990.509055 eV Core-core repulsion = 23300.375016 eV Total energy + Delta-G solvation = -3690.134040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.38110 -38.54455 -37.95422 -37.26806 -36.71486 -34.07666 -33.90441 -30.87484 -29.89778 -28.40522 -27.97552 -27.48968 -26.98551 -22.94845 -22.66928 -21.57358 -20.66469 -20.17506 -18.57035 -18.31274 -17.47559 -17.07353 -16.86705 -16.60454 -16.35802 -16.04665 -15.62018 -15.53769 -14.99191 -14.90334 -14.56959 -13.96437 -13.82157 -13.70507 -13.60231 -13.35188 -13.20156 -13.08087 -12.88707 -12.86015 -12.85423 -12.80982 -12.48437 -12.44887 -12.39682 -12.31117 -12.17221 -12.14466 -11.87133 -11.59068 -11.48796 -11.16783 -10.97509 -10.52909 -10.40736 -10.29652 -9.86365 -8.19720 -6.36067 -0.46564 1.34684 1.40146 1.51019 2.07039 2.39296 2.94020 3.00853 3.06859 3.36370 3.53240 3.69860 3.85331 4.00261 4.05321 4.12366 4.25993 4.31635 4.42404 4.55262 4.56935 4.59084 4.64456 4.68025 4.75965 4.78941 4.85715 4.92102 4.96189 4.98621 5.00385 5.01871 5.12127 5.23216 5.26117 5.30766 5.39219 5.44052 5.45453 5.59998 5.65503 5.71101 6.20719 6.23125 6.42592 6.71075 7.37802 8.86308 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.003947 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.057849 B = 7093.170269 C = 7337.095847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.386 6.386 3 C 0.112 3.888 4 C -0.174 4.174 5 C -0.191 4.191 6 C -0.112 4.112 7 C 0.144 3.856 8 H 0.083 0.917 9 C -0.164 4.164 10 N -1.115 6.115 11 S 2.622 3.378 12 O -0.994 6.994 13 O -0.997 6.997 14 C -0.551 4.551 15 C 0.006 3.994 16 C -0.536 4.536 17 H 0.045 0.955 18 C 0.046 3.954 19 N -0.889 5.889 20 Si 0.931 3.069 21 H -0.276 1.276 22 H -0.268 1.268 23 H -0.276 1.276 24 C -0.195 4.195 25 C -0.129 4.129 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.037 0.963 39 H 0.059 0.941 40 H 0.420 0.580 41 H 0.123 0.877 42 H 0.134 0.866 43 H 0.266 0.734 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.137 -3.662 11.961 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.306 6.306 3 C 0.073 3.927 4 C -0.231 4.231 5 C -0.248 4.248 6 C -0.151 4.151 7 C 0.038 3.962 8 H 0.101 0.899 9 C -0.222 4.222 10 N -0.875 5.875 11 S 2.720 3.280 12 O -0.984 6.984 13 O -0.987 6.987 14 C -0.684 4.684 15 C 0.003 3.997 16 C -0.574 4.574 17 H 0.063 0.937 18 C -0.157 4.157 19 N -0.525 5.525 20 Si 0.756 3.244 21 H -0.201 1.201 22 H -0.194 1.194 23 H -0.201 1.201 24 C -0.232 4.232 25 C -0.168 4.168 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.255 0.745 41 H 0.142 0.858 42 H 0.152 0.848 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.106 0.894 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.501 -4.297 11.509 20.571 hybrid contribution 1.022 0.805 0.184 1.314 sum -15.479 -3.492 11.692 19.710 Atomic orbital electron populations 1.22929 0.81019 1.03289 1.00817 1.88054 1.20292 1.27347 1.94886 1.21448 0.92482 0.83567 0.95252 1.22370 1.02431 1.01091 0.97197 1.22598 1.02868 1.01393 0.97987 1.21992 0.93514 1.02414 0.97141 1.21004 0.77603 0.97810 0.99810 0.89890 1.22392 1.03295 0.95139 1.01399 1.55672 1.15365 1.90334 1.26106 1.04345 0.72949 0.77456 0.73278 1.93461 1.79611 1.56508 1.68808 1.93477 1.33874 1.88110 1.83286 1.29849 1.09815 1.21192 1.07517 1.18407 0.91993 1.03517 0.85737 1.20738 0.90551 0.98630 1.47456 0.93656 1.25460 1.01891 0.95073 0.93273 1.70036 1.36416 0.99855 1.46222 0.85920 0.81874 0.78340 0.78258 1.20074 1.19359 1.20134 1.23218 1.00990 0.98450 1.00529 1.22429 1.00774 0.90376 1.03220 0.89203 0.92956 0.93375 0.90716 0.91149 0.91735 0.92034 0.90828 0.90667 0.89744 0.88693 0.88704 0.94348 0.92159 0.74464 0.85840 0.84784 0.92518 0.90301 0.88256 0.89368 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.21 113.37 1.16 1.35 16 2 O -0.39 -6.79 7.02 -148.98 -1.05 -7.84 16 3 C 0.11 1.81 0.81 -10.79 -0.01 1.80 16 4 C -0.17 -2.18 8.25 71.98 0.59 -1.59 16 5 C -0.19 -3.00 7.37 71.98 0.53 -2.47 16 6 C -0.11 -2.07 4.34 30.59 0.13 -1.93 16 7 C 0.14 3.53 2.51 44.99 0.11 3.65 16 8 H 0.08 2.00 4.93 -2.39 -0.01 1.99 16 9 C -0.16 -4.16 8.62 71.98 0.62 -3.54 16 10 N -1.11 -32.73 5.35 -169.40 -0.91 -33.64 16 11 S 2.62 107.44 4.96 -56.49 -0.28 107.16 16 12 O -0.99 -44.61 17.20 -127.65 -2.20 -46.81 16 13 O -1.00 -49.46 17.46 -127.65 -2.23 -51.69 16 14 C -0.55 -22.20 5.87 71.98 0.42 -21.78 16 15 C 0.01 0.27 1.52 -52.93 -0.08 0.19 16 16 C -0.54 -30.08 7.69 25.60 0.20 -29.89 16 17 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 18 C 0.05 2.57 5.43 84.65 0.46 3.03 16 19 N -0.89 -49.04 12.64 21.45 0.27 -48.77 16 20 Si 0.93 45.05 29.54 68.60 2.03 47.08 16 21 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 C -0.19 -8.31 9.94 30.62 0.30 -8.01 16 25 C -0.13 -5.74 9.16 30.62 0.28 -5.46 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.53 6.42 -2.39 -0.02 0.52 16 28 H 0.05 0.56 6.57 -2.38 -0.02 0.54 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.74 6.54 -2.39 -0.02 0.73 16 31 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 1.09 6.62 -2.38 -0.02 1.08 16 33 H 0.07 0.94 6.92 -2.39 -0.02 0.92 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 2.18 5.81 -2.39 -0.01 2.17 16 38 H 0.04 1.16 7.48 -2.39 -0.02 1.14 16 39 H 0.06 1.42 8.09 -2.39 -0.02 1.40 16 40 H 0.42 10.69 8.81 -96.74 -0.85 9.83 16 41 H 0.12 5.13 8.14 -2.39 -0.02 5.11 16 42 H 0.13 4.23 7.16 -2.39 -0.02 4.22 16 43 H 0.27 13.87 8.32 -92.71 -0.77 13.10 16 44 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 45 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 46 H 0.09 3.44 8.14 -2.38 -0.02 3.42 16 47 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -70.69 378.22 0.47 -70.23 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.10 Total: 28.92 kcal Atomic # 6 Polarization: -69.37 SS G_CDS: 4.72 Total: -64.65 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -0.64 Total: -82.40 kcal Atomic # 8 Polarization: -100.86 SS G_CDS: -5.47 Total: -106.33 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 107.44 SS G_CDS: -0.28 Total: 107.16 kcal Total: -70.69 0.47 -70.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451243316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.923 kcal (2) G-P(sol) polarization free energy of solvation -70.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds