Wall clock time and date at job start Tue Mar 31 2020 12:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47752 * 2 1 4 4 N 1.46503 * 109.46932 * 240.00529 * 2 1 3 5 5 S 1.65600 * 120.00333 * 94.99751 * 4 2 1 6 6 O 1.42093 * 104.28024 * 181.07277 * 5 4 2 7 7 O 1.42105 * 104.27775 * 308.93469 * 5 4 2 8 8 C 1.81412 * 104.44457 * 65.00124 * 5 4 2 9 9 C 1.53005 * 109.46779 * 180.02562 * 8 5 4 10 10 C 1.52994 * 109.46999 * 300.00210 * 9 8 5 11 11 C 1.52994 * 109.46969 * 60.00315 * 9 8 5 12 12 C 1.50698 * 109.46827 * 180.02562 * 9 8 5 13 13 H 1.08006 * 120.00025 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99855 * 180.02562 * 12 9 8 15 15 N 1.31509 * 120.00212 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99803 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47120 * 59.99876 * 16 14 12 18 18 H 1.48504 * 109.47184 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47253 * 299.99804 * 16 14 12 20 20 C 1.53000 * 109.47270 * 120.00824 * 2 1 3 21 21 H 1.09000 * 109.49255 * 174.96684 * 20 2 1 22 22 C 1.53091 * 109.47862 * 294.99730 * 20 2 1 23 23 C 1.53176 * 109.21206 * 177.62293 * 22 20 2 24 24 C 1.53174 * 109.04061 * 302.98570 * 23 22 20 25 25 C 1.53097 * 109.16185 * 56.97999 * 24 23 22 26 26 O 1.42902 * 109.41493 * 302.39739 * 25 24 23 27 27 H 1.09008 * 109.47069 * 299.99461 * 1 2 3 28 28 H 1.08999 * 109.47313 * 59.99148 * 1 2 3 29 29 H 1.08998 * 109.47757 * 179.97438 * 1 2 3 30 30 H 0.97007 * 120.00052 * 275.00418 * 4 2 1 31 31 H 1.08995 * 109.46982 * 300.00237 * 8 5 4 32 32 H 1.08998 * 109.46926 * 60.00492 * 8 5 4 33 33 H 1.08995 * 109.47773 * 60.00189 * 10 9 8 34 34 H 1.09006 * 109.47286 * 180.02562 * 10 9 8 35 35 H 1.09006 * 109.47460 * 299.99720 * 10 9 8 36 36 H 1.09001 * 109.47618 * 59.99905 * 11 9 8 37 37 H 1.09003 * 109.47028 * 180.02562 * 11 9 8 38 38 H 1.09002 * 109.47249 * 299.99487 * 11 9 8 39 39 H 0.96998 * 120.00368 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.52401 * 57.68445 * 22 20 2 41 41 H 1.09004 * 109.52068 * 297.56090 * 22 20 2 42 42 H 1.08995 * 109.54674 * 62.85906 * 23 22 20 43 43 H 1.08999 * 109.54128 * 183.11874 * 23 22 20 44 44 H 1.08995 * 109.52612 * 176.89131 * 24 23 22 45 45 H 1.09001 * 109.51989 * 297.07828 * 24 23 22 46 46 H 1.08997 * 109.47580 * 62.37620 * 25 24 23 47 47 H 1.08994 * 109.47934 * 182.41016 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 16 2.4120 0.1773 -2.5506 6 8 2.8120 -0.8073 -3.4938 7 8 1.2750 0.9969 -2.7846 8 6 3.8313 1.1873 -2.0440 9 6 4.2934 2.0455 -3.2235 10 6 4.7020 1.1378 -4.3853 11 6 3.1498 2.9594 -3.6681 12 6 5.4727 2.8840 -2.8029 13 1 5.8548 2.8118 -1.7953 14 6 6.0640 3.7435 -3.7045 15 7 5.5992 3.8310 -4.9315 16 14 7.5255 4.7834 -3.1829 17 1 8.6356 3.8963 -2.7518 18 1 7.9741 5.6163 -4.3276 19 1 7.1289 5.6640 -2.0549 20 6 2.0400 -0.7214 1.2491 21 1 3.1263 -0.8003 1.2055 22 6 1.6352 0.0689 2.4962 23 6 2.0968 -0.6886 3.7449 24 6 1.4915 -2.0955 3.7282 25 6 1.9017 -2.8037 2.4343 26 8 1.4692 -2.0314 1.3124 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 2.1108 -1.6562 -1.1951 31 1 3.5400 1.8342 -1.2166 32 1 4.6458 0.5362 -1.7269 33 1 3.8493 0.5309 -4.6897 34 1 5.0316 1.7491 -5.2255 35 1 5.5168 0.4866 -4.0686 36 1 2.8586 3.6061 -2.8404 37 1 3.4788 3.5704 -4.5087 38 1 2.2970 2.3525 -3.9725 39 1 6.0153 4.4354 -5.5659 40 1 0.5514 0.1831 2.5192 41 1 2.1046 1.0524 2.4724 42 1 3.1844 -0.7595 3.7471 43 1 1.7630 -0.1586 4.6370 44 1 1.8589 -2.6604 4.5849 45 1 0.4048 -2.0251 3.7761 46 1 2.9861 -2.9098 2.4061 47 1 1.4387 -3.7897 2.3971 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451380662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:03 Heat of formation + Delta-G solvation = -137.509252 kcal Electronic energy + Delta-G solvation = -26920.626388 eV Core-core repulsion = 23230.043197 eV Total energy + Delta-G solvation = -3690.583190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85689 -36.58927 -36.26085 -35.93615 -35.21784 -33.86641 -31.67532 -31.42592 -28.86338 -26.62748 -25.70248 -25.52959 -25.21659 -24.07027 -21.58006 -20.24484 -19.58364 -18.67746 -17.41221 -16.64544 -16.32573 -15.89171 -15.73723 -15.25327 -14.86874 -14.84410 -14.69792 -14.60948 -13.63406 -13.30071 -13.23719 -12.98006 -12.94354 -12.80804 -12.49401 -12.13642 -12.03847 -11.81627 -11.50100 -11.40640 -11.35176 -11.16858 -11.06379 -11.03946 -10.91901 -10.73994 -10.68202 -10.58824 -10.35820 -10.25209 -10.09449 -9.67715 -9.63867 -9.57461 -9.20222 -8.66638 -8.39717 -6.03061 -4.15255 0.91155 3.23215 3.26448 3.32227 3.33452 3.53002 4.30206 4.37504 4.47178 4.54675 4.58843 4.69004 4.81480 4.85226 4.94394 5.11822 5.16575 5.22100 5.28796 5.40440 5.44533 5.54700 5.58112 5.66953 5.70161 5.73766 5.76486 5.82104 5.96912 6.01461 6.26445 6.38704 6.44960 6.71205 6.81033 6.92505 7.02960 7.04917 7.25579 7.32860 7.51680 7.67818 7.99076 8.10165 8.33509 8.82878 9.50049 10.98206 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.003850 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.269465 B = 7271.322844 C = 8170.625012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.162 3.838 3 H 0.094 0.906 4 N -1.122 6.122 5 S 2.593 3.407 6 O -0.965 6.965 7 O -0.962 6.962 8 C -0.585 4.585 9 C 0.083 3.917 10 C -0.164 4.164 11 C -0.163 4.163 12 C -0.503 4.503 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.883 5.883 16 Si 0.896 3.104 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.084 3.916 21 H 0.067 0.933 22 C -0.154 4.154 23 C -0.122 4.122 24 C -0.156 4.156 25 C 0.060 3.940 26 O -0.371 6.371 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.415 0.585 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.028 0.972 34 H 0.095 0.905 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.094 0.906 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.049 0.951 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 -9.736 16.312 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.054 3.946 3 H 0.112 0.888 4 N -0.879 5.879 5 S 2.690 3.310 6 O -0.956 6.956 7 O -0.952 6.952 8 C -0.718 4.718 9 C 0.080 3.920 10 C -0.221 4.221 11 C -0.221 4.221 12 C -0.542 4.542 13 H 0.076 0.924 14 C -0.137 4.137 15 N -0.521 5.521 16 Si 0.723 3.277 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.203 1.203 20 C 0.024 3.976 21 H 0.085 0.915 22 C -0.193 4.193 23 C -0.160 4.160 24 C -0.194 4.194 25 C -0.017 4.017 26 O -0.290 6.290 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.249 0.751 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.046 0.954 34 H 0.113 0.887 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.068 0.932 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.086 -9.583 15.151 19.667 hybrid contribution 1.595 0.434 1.173 2.027 sum -6.491 -9.149 16.324 19.807 Atomic orbital electron populations 1.22269 0.94459 1.03230 1.02728 1.20723 0.95645 0.95002 0.83239 0.88795 1.55884 1.82487 1.19594 1.29903 1.05636 0.77236 0.74999 0.73080 1.93550 1.84549 1.58931 1.58553 1.93541 1.48282 1.70011 1.83369 1.30558 1.16933 1.13148 1.11177 1.17915 0.95298 0.91339 0.87420 1.22272 0.99329 0.98459 1.02080 1.22269 0.95713 1.00974 1.03144 1.20902 1.13209 1.22403 0.97690 0.92416 1.24933 0.97119 0.96727 0.94924 1.69788 1.40824 1.37487 1.04041 0.86605 0.82730 0.80239 0.78082 1.20306 1.21178 1.20290 1.22454 0.97321 0.83573 0.94209 0.91475 1.22280 1.02971 0.99598 0.94424 1.21578 1.00687 0.95665 0.98041 1.22193 1.01883 0.96830 0.98510 1.22561 0.99014 0.94645 0.85474 1.87954 1.69560 1.25769 1.45753 0.91930 0.90842 0.91386 0.75109 0.86672 0.86330 0.95355 0.88659 0.94512 0.94521 0.88695 0.95244 0.92683 0.90237 0.90336 0.91747 0.91384 0.91103 0.91046 0.93229 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.08 37.16 0.34 -1.70 16 2 C 0.16 1.99 2.55 -67.93 -0.17 1.82 16 3 H 0.09 1.09 7.15 -51.93 -0.37 0.72 16 4 N -1.12 -15.95 5.35 -4.89 -0.03 -15.98 16 5 S 2.59 48.31 4.42 -107.50 -0.47 47.84 16 6 O -0.97 -20.66 15.70 -57.54 -0.90 -21.57 16 7 O -0.96 -20.04 14.73 -57.54 -0.85 -20.89 16 8 C -0.58 -11.30 4.90 37.16 0.18 -11.11 16 9 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 10 C -0.16 -4.06 7.77 37.15 0.29 -3.77 16 11 C -0.16 -4.00 7.78 37.15 0.29 -3.72 16 12 C -0.50 -13.12 8.01 -34.44 -0.28 -13.40 16 13 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 14 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 15 N -0.88 -24.10 9.35 55.43 0.52 -23.58 16 16 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 C 0.08 0.86 2.53 -26.68 -0.07 0.80 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 C -0.15 -1.31 5.22 -26.59 -0.14 -1.45 16 23 C -0.12 -0.89 6.03 -26.55 -0.16 -1.05 16 24 C -0.16 -1.09 6.14 -26.59 -0.16 -1.25 16 25 C 0.06 0.48 6.84 37.21 0.25 0.74 16 26 O -0.37 -3.96 9.25 -35.23 -0.33 -4.29 16 27 H 0.06 0.62 6.52 -51.92 -0.34 0.28 16 28 H 0.07 1.03 7.42 -51.93 -0.39 0.64 16 29 H 0.07 0.82 7.56 -51.93 -0.39 0.43 16 30 H 0.42 5.41 8.55 -34.47 -0.29 5.12 16 31 H 0.11 1.97 7.44 -51.93 -0.39 1.58 16 32 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 33 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 34 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 38 H 0.03 0.69 5.46 -51.93 -0.28 0.40 16 39 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.08 0.66 6.47 -51.93 -0.34 0.33 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -31.49 361.97 -9.32 -40.81 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.89 Total: 7.24 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 0.20 Total: -30.55 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.49 Total: -39.56 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -2.08 Total: -46.74 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 48.31 SS G_CDS: -0.47 Total: 47.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.49 -9.32 -40.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451380662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.697 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds