Wall clock time and date at job start Tue Mar 31 2020 12:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47752 * 2 1 4 4 N 1.46503 * 109.46932 * 240.00529 * 2 1 3 5 5 S 1.65600 * 120.00333 * 94.99751 * 4 2 1 6 6 O 1.42093 * 104.28024 * 181.07277 * 5 4 2 7 7 O 1.42105 * 104.27775 * 308.93469 * 5 4 2 8 8 C 1.81412 * 104.44457 * 65.00124 * 5 4 2 9 9 C 1.53005 * 109.46779 * 180.02562 * 8 5 4 10 10 C 1.52994 * 109.46999 * 300.00210 * 9 8 5 11 11 C 1.52994 * 109.46969 * 60.00315 * 9 8 5 12 12 C 1.50698 * 109.46827 * 180.02562 * 9 8 5 13 13 H 1.08006 * 120.00025 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99855 * 180.02562 * 12 9 8 15 15 N 1.31509 * 120.00212 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99803 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47120 * 59.99876 * 16 14 12 18 18 H 1.48504 * 109.47184 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47253 * 299.99804 * 16 14 12 20 20 C 1.53000 * 109.47270 * 120.00824 * 2 1 3 21 21 H 1.09000 * 109.49255 * 174.96684 * 20 2 1 22 22 C 1.53091 * 109.47862 * 294.99730 * 20 2 1 23 23 C 1.53176 * 109.21206 * 177.62293 * 22 20 2 24 24 C 1.53174 * 109.04061 * 302.98570 * 23 22 20 25 25 C 1.53097 * 109.16185 * 56.97999 * 24 23 22 26 26 O 1.42902 * 109.41493 * 302.39739 * 25 24 23 27 27 H 1.09008 * 109.47069 * 299.99461 * 1 2 3 28 28 H 1.08999 * 109.47313 * 59.99148 * 1 2 3 29 29 H 1.08998 * 109.47757 * 179.97438 * 1 2 3 30 30 H 0.97007 * 120.00052 * 275.00418 * 4 2 1 31 31 H 1.08995 * 109.46982 * 300.00237 * 8 5 4 32 32 H 1.08998 * 109.46926 * 60.00492 * 8 5 4 33 33 H 1.08995 * 109.47773 * 60.00189 * 10 9 8 34 34 H 1.09006 * 109.47286 * 180.02562 * 10 9 8 35 35 H 1.09006 * 109.47460 * 299.99720 * 10 9 8 36 36 H 1.09001 * 109.47618 * 59.99905 * 11 9 8 37 37 H 1.09003 * 109.47028 * 180.02562 * 11 9 8 38 38 H 1.09002 * 109.47249 * 299.99487 * 11 9 8 39 39 H 0.96998 * 120.00368 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.52401 * 57.68445 * 22 20 2 41 41 H 1.09004 * 109.52068 * 297.56090 * 22 20 2 42 42 H 1.08995 * 109.54674 * 62.85906 * 23 22 20 43 43 H 1.08999 * 109.54128 * 183.11874 * 23 22 20 44 44 H 1.08995 * 109.52612 * 176.89131 * 24 23 22 45 45 H 1.09001 * 109.51989 * 297.07828 * 24 23 22 46 46 H 1.08997 * 109.47580 * 62.37620 * 25 24 23 47 47 H 1.08994 * 109.47934 * 182.41016 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 16 2.4120 0.1773 -2.5506 6 8 2.8120 -0.8073 -3.4938 7 8 1.2750 0.9969 -2.7846 8 6 3.8313 1.1873 -2.0440 9 6 4.2934 2.0455 -3.2235 10 6 4.7020 1.1378 -4.3853 11 6 3.1498 2.9594 -3.6681 12 6 5.4727 2.8840 -2.8029 13 1 5.8548 2.8118 -1.7953 14 6 6.0640 3.7435 -3.7045 15 7 5.5992 3.8310 -4.9315 16 14 7.5255 4.7834 -3.1829 17 1 8.6356 3.8963 -2.7518 18 1 7.9741 5.6163 -4.3276 19 1 7.1289 5.6640 -2.0549 20 6 2.0400 -0.7214 1.2491 21 1 3.1263 -0.8003 1.2055 22 6 1.6352 0.0689 2.4962 23 6 2.0968 -0.6886 3.7449 24 6 1.4915 -2.0955 3.7282 25 6 1.9017 -2.8037 2.4343 26 8 1.4692 -2.0314 1.3124 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 2.1108 -1.6562 -1.1951 31 1 3.5400 1.8342 -1.2166 32 1 4.6458 0.5362 -1.7269 33 1 3.8493 0.5309 -4.6897 34 1 5.0316 1.7491 -5.2255 35 1 5.5168 0.4866 -4.0686 36 1 2.8586 3.6061 -2.8404 37 1 3.4788 3.5704 -4.5087 38 1 2.2970 2.3525 -3.9725 39 1 6.0153 4.4354 -5.5659 40 1 0.5514 0.1831 2.5192 41 1 2.1046 1.0524 2.4724 42 1 3.1844 -0.7595 3.7471 43 1 1.7630 -0.1586 4.6370 44 1 1.8589 -2.6604 4.5849 45 1 0.4048 -2.0251 3.7761 46 1 2.9861 -2.9098 2.4061 47 1 1.4387 -3.7897 2.3971 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451380662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:02 Heat of formation + Delta-G solvation = -158.615589 kcal Electronic energy + Delta-G solvation = -26921.541627 eV Core-core repulsion = 23230.043197 eV Total energy + Delta-G solvation = -3691.498430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.58522 -38.12743 -38.10305 -37.02954 -36.77299 -34.49949 -33.62385 -32.30809 -29.75820 -28.30878 -27.67818 -27.23756 -26.26599 -24.73263 -22.42343 -21.41075 -20.88069 -20.15250 -18.84640 -17.92338 -17.61132 -17.06539 -16.87567 -16.58602 -16.58042 -16.07251 -15.47889 -15.41925 -14.96538 -14.70759 -14.43368 -14.33969 -14.28974 -13.89288 -13.75872 -13.53121 -13.28598 -13.03004 -12.94964 -12.84558 -12.79147 -12.68731 -12.48257 -12.28116 -12.16950 -12.13020 -12.05493 -11.92253 -11.80068 -11.59127 -11.52499 -11.36100 -11.20100 -10.65409 -10.39903 -10.34570 -10.26503 -8.01456 -6.20265 -0.58585 1.46553 1.46929 1.54100 1.90887 2.45439 2.77369 2.92165 3.20815 3.35312 3.66574 3.84595 3.99279 4.02431 4.04683 4.12467 4.16385 4.26082 4.32882 4.45061 4.56699 4.61494 4.68069 4.76620 4.87083 4.88167 4.90317 4.96375 4.99933 5.01682 5.10089 5.11435 5.16782 5.22137 5.29633 5.39667 5.43456 5.52091 5.52170 5.65734 5.98440 6.12391 6.15036 6.34586 6.35263 6.84425 7.48056 8.98277 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.003850 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.269465 B = 7271.322844 C = 8170.625012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.103 0.897 4 N -1.107 6.107 5 S 2.611 3.389 6 O -0.996 6.996 7 O -0.986 6.986 8 C -0.586 4.586 9 C 0.069 3.931 10 C -0.161 4.161 11 C -0.159 4.159 12 C -0.517 4.517 13 H 0.065 0.935 14 C 0.017 3.983 15 N -0.909 5.909 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.270 1.270 20 C 0.087 3.913 21 H 0.070 0.930 22 C -0.155 4.155 23 C -0.122 4.122 24 C -0.153 4.153 25 C 0.053 3.947 26 O -0.390 6.390 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.423 0.577 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.032 0.968 39 H 0.261 0.739 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.201 -10.082 19.004 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 H 0.121 0.879 4 N -0.867 5.867 5 S 2.708 3.292 6 O -0.987 6.987 7 O -0.976 6.976 8 C -0.719 4.719 9 C 0.067 3.933 10 C -0.218 4.218 11 C -0.217 4.217 12 C -0.556 4.556 13 H 0.083 0.917 14 C -0.182 4.182 15 N -0.547 5.547 16 Si 0.780 3.220 17 H -0.198 1.198 18 H -0.215 1.215 19 H -0.195 1.195 20 C 0.027 3.973 21 H 0.088 0.912 22 C -0.193 4.193 23 C -0.160 4.160 24 C -0.190 4.190 25 C -0.024 4.024 26 O -0.309 6.309 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.258 0.742 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.803 -9.938 17.853 21.872 hybrid contribution 1.454 0.484 0.371 1.577 sum -6.348 -9.453 18.223 21.489 Atomic orbital electron populations 1.22242 0.94380 1.03081 1.02771 1.21056 0.95846 0.95697 0.83166 0.87932 1.55469 1.82022 1.19688 1.29522 1.04832 0.76554 0.74447 0.73356 1.93500 1.84897 1.59683 1.60586 1.93509 1.49034 1.70871 1.84185 1.30470 1.17979 1.13455 1.09975 1.17914 0.94806 0.91710 0.88823 1.22214 0.99485 0.98284 1.01855 1.22196 0.96097 1.00970 1.02428 1.21266 1.13784 1.22553 0.97974 0.91708 1.25681 0.99538 0.97985 0.94991 1.69939 1.41880 1.38021 1.04896 0.85675 0.79878 0.78782 0.77654 1.19762 1.21484 1.19532 1.22399 0.97323 0.83770 0.93788 0.91179 1.22297 1.03142 0.99834 0.94004 1.21598 1.00826 0.95753 0.97785 1.22169 1.01709 0.96779 0.98394 1.22752 0.99398 0.94921 0.85298 1.87924 1.69927 1.26016 1.47048 0.89606 0.93064 0.91630 0.74185 0.84283 0.84503 0.95078 0.91054 0.94214 0.93897 0.91176 0.94895 0.92963 0.90146 0.89601 0.91573 0.90318 0.89590 0.91340 0.92868 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 9.08 71.98 0.65 -3.12 16 2 C 0.15 3.38 2.55 44.99 0.11 3.50 16 3 H 0.10 2.14 7.15 -2.39 -0.02 2.12 16 4 N -1.11 -29.89 5.35 -169.39 -0.91 -30.80 16 5 S 2.61 95.18 4.42 -56.49 -0.25 94.93 16 6 O -1.00 -42.37 15.70 -127.65 -2.00 -44.37 16 7 O -0.99 -40.71 14.73 -127.65 -1.88 -42.59 16 8 C -0.59 -21.71 4.90 71.98 0.35 -21.35 16 9 C 0.07 3.33 0.52 -52.93 -0.03 3.30 16 10 C -0.16 -8.04 7.77 71.98 0.56 -7.48 16 11 C -0.16 -7.84 7.78 71.98 0.56 -7.28 16 12 C -0.52 -26.52 8.01 25.60 0.21 -26.31 16 13 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 14 C 0.02 0.92 5.15 84.66 0.44 1.35 16 15 N -0.91 -50.27 9.35 21.45 0.20 -50.07 16 16 Si 0.95 41.66 29.54 68.60 2.03 43.69 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 20 C 0.09 1.58 2.53 30.62 0.08 1.66 16 21 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 22 C -0.15 -2.20 5.22 30.68 0.16 -2.04 16 23 C -0.12 -1.43 6.03 30.71 0.19 -1.24 16 24 C -0.15 -1.72 6.14 30.69 0.19 -1.53 16 25 C 0.05 0.73 6.84 72.01 0.49 1.23 16 26 O -0.39 -7.53 9.25 -148.98 -1.38 -8.91 16 27 H 0.09 1.52 6.52 -2.38 -0.02 1.50 16 28 H 0.05 1.39 7.42 -2.39 -0.02 1.38 16 29 H 0.06 1.51 7.56 -2.39 -0.02 1.49 16 30 H 0.42 10.43 8.55 -96.74 -0.83 9.61 16 31 H 0.14 4.42 7.44 -2.39 -0.02 4.40 16 32 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 33 H 0.03 1.49 5.46 -2.39 -0.01 1.48 16 34 H 0.07 3.89 6.07 -2.38 -0.01 3.88 16 35 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 38 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 39 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 40 H 0.08 1.13 6.47 -2.39 -0.02 1.11 16 41 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -66.85 361.97 -0.11 -66.96 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.13 Total: 30.49 kcal Atomic # 6 Polarization: -63.28 SS G_CDS: 3.96 Total: -59.33 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -0.71 Total: -80.87 kcal Atomic # 8 Polarization: -90.60 SS G_CDS: -5.26 Total: -95.87 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 95.18 SS G_CDS: -0.25 Total: 94.93 kcal Total: -66.85 -0.11 -66.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451380662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.657 kcal (2) G-P(sol) polarization free energy of solvation -66.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds