Wall clock time and date at job start Tue Mar 31 2020 12:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.57372 * 2 1 4 4 C 1.53096 * 109.52234 * 239.84213 * 2 1 3 5 5 O 1.42904 * 109.41275 * 182.48522 * 4 2 1 6 6 C 1.42903 * 114.09863 * 61.15841 * 5 4 2 7 7 C 1.53101 * 109.48666 * 298.88540 * 6 5 4 8 8 C 1.53177 * 109.52448 * 120.15545 * 2 1 3 9 9 H 1.08999 * 109.54421 * 56.92908 * 8 2 1 10 10 C 1.53001 * 109.54391 * 296.75575 * 8 2 1 11 11 N 1.46498 * 109.47089 * 175.17353 * 10 8 2 12 12 S 1.65602 * 119.99612 * 164.71987 * 11 10 8 13 13 O 1.42109 * 104.27511 * 181.34803 * 12 11 10 14 14 O 1.42098 * 104.28120 * 309.20801 * 12 11 10 15 15 C 1.81394 * 104.44973 * 65.28269 * 12 11 10 16 16 C 1.53003 * 109.47387 * 179.97438 * 15 12 11 17 17 C 1.53000 * 109.46517 * 299.99470 * 16 15 12 18 18 C 1.52993 * 109.47159 * 59.99605 * 16 15 12 19 19 C 1.50707 * 109.47138 * 179.97438 * 16 15 12 20 20 H 1.08001 * 119.99608 * 359.97438 * 19 16 15 21 21 C 1.37871 * 119.99869 * 179.97438 * 19 16 15 22 22 N 1.31520 * 119.99869 * 359.97438 * 21 19 16 23 23 Si 1.86795 * 120.00166 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47153 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47547 * 119.99725 * 23 21 19 26 26 H 1.48501 * 109.47187 * 240.00056 * 23 21 19 27 27 H 1.08997 * 109.46774 * 299.84336 * 1 2 3 28 28 H 1.08995 * 109.47225 * 59.84176 * 1 2 3 29 29 H 1.09002 * 109.47142 * 179.84685 * 1 2 3 30 30 H 1.09004 * 109.47934 * 302.46853 * 4 2 1 31 31 H 1.09005 * 109.47865 * 62.48993 * 4 2 1 32 32 H 1.08999 * 109.47567 * 58.82177 * 6 5 4 33 33 H 1.08996 * 109.47587 * 178.85516 * 6 5 4 34 34 H 1.08998 * 109.45506 * 297.61919 * 7 6 5 35 35 H 1.08997 * 109.59617 * 177.41838 * 7 6 5 36 36 H 1.08996 * 109.47377 * 55.17511 * 10 8 2 37 37 H 1.08999 * 109.46886 * 295.17649 * 10 8 2 38 38 H 0.97001 * 120.00384 * 345.00465 * 11 10 8 39 39 H 1.09009 * 109.47044 * 299.99503 * 15 12 11 40 40 H 1.09001 * 109.47747 * 59.99183 * 15 12 11 41 41 H 1.08994 * 109.47224 * 60.00651 * 17 16 15 42 42 H 1.09008 * 109.46641 * 179.97438 * 17 16 15 43 43 H 1.09001 * 109.47344 * 299.99451 * 17 16 15 44 44 H 1.09002 * 109.47371 * 59.99841 * 18 16 15 45 45 H 1.08994 * 109.47114 * 180.02562 * 18 16 15 46 46 H 1.08998 * 109.47012 * 299.99873 * 18 16 15 47 47 H 0.97007 * 119.99442 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4695 -0.7743 -1.2163 6 6 4.0044 -1.4816 -0.0957 7 6 3.5716 -0.7890 1.1993 8 6 2.0420 -0.7252 1.2483 9 1 1.6356 -1.7363 1.2750 10 6 1.6012 0.0367 2.4998 11 7 1.9916 -0.7175 3.6935 12 16 1.9907 0.0203 5.1760 13 8 2.4454 -0.9873 6.0691 14 8 2.7375 1.2123 4.9748 15 6 0.2461 0.4071 5.4880 16 6 0.1122 1.0997 6.8457 17 6 0.6332 0.1719 7.9450 18 6 0.9285 2.3936 6.8409 19 6 -1.3372 1.4217 7.1046 20 1 -2.0875 1.1589 6.3736 21 6 -1.7051 2.0516 8.2745 22 7 -0.7913 2.3710 9.1648 23 14 -3.5016 2.4500 8.5957 24 1 -4.3236 1.9900 7.4477 25 1 -3.9481 1.7603 9.8327 26 1 -3.6612 3.9171 8.7618 27 1 -0.3633 0.5114 0.8914 28 1 -0.3633 0.5163 -0.8885 29 1 -0.3633 -1.0277 -0.0027 30 1 1.6432 -1.7393 -1.2677 31 1 1.7157 -0.1886 -2.1389 32 1 3.6316 -2.5058 -0.1007 33 1 5.0926 -1.4903 -0.1572 34 1 3.9792 0.2216 1.2243 35 1 3.9403 -1.3528 2.0562 36 1 0.5185 0.1614 2.4868 37 1 2.0796 1.0160 2.5161 38 1 2.2546 -1.6479 3.6149 39 1 -0.1253 1.0678 4.7045 40 1 -0.3355 -0.5147 5.4918 41 1 1.6815 -0.0605 7.7577 42 1 0.5382 0.6655 8.9123 43 1 0.0515 -0.7499 7.9485 44 1 0.5574 3.0546 6.0576 45 1 0.8334 2.8868 7.8082 46 1 1.9768 2.1611 6.6535 47 1 -1.0503 2.8139 9.9881 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451537592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:29 Heat of formation + Delta-G solvation = -140.227814 kcal Electronic energy + Delta-G solvation = -26560.409207 eV Core-core repulsion = 22869.708131 eV Total energy + Delta-G solvation = -3690.701076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.99036 -36.66558 -36.31913 -36.26947 -35.29889 -33.81385 -31.97261 -31.67955 -27.50269 -26.79195 -26.62804 -25.72806 -25.24256 -22.95332 -22.48562 -20.38963 -19.55989 -18.71816 -17.33172 -16.65019 -16.28354 -15.92205 -15.84511 -15.53115 -15.10416 -14.83511 -14.74586 -14.58916 -13.98974 -13.65935 -13.19846 -13.03052 -12.81093 -12.53766 -12.50158 -12.30995 -12.20827 -12.08123 -11.73172 -11.45437 -11.34388 -11.15665 -11.11510 -11.08823 -10.93257 -10.75255 -10.71876 -10.49211 -10.37036 -10.29069 -10.12661 -9.76183 -9.66960 -9.60051 -9.21541 -8.67648 -8.42035 -6.05106 -4.17134 0.86038 3.20494 3.23522 3.32068 3.34390 3.61874 4.24989 4.34707 4.38989 4.40570 4.43092 4.62571 4.79492 4.92925 5.05962 5.13749 5.19661 5.20210 5.20939 5.27693 5.40117 5.45977 5.47926 5.59421 5.66483 5.68440 5.69517 5.82201 5.87310 5.97995 6.00789 6.17956 6.36217 6.68856 6.78396 6.89494 6.92353 7.00860 7.11906 7.30270 7.49152 7.66355 7.96785 8.08223 8.31405 8.81585 9.48440 10.96221 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.003378 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.794111 B = 8288.114079 C = 9152.442218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 H 0.085 0.915 4 C 0.067 3.933 5 O -0.384 6.384 6 C 0.060 3.940 7 C -0.154 4.154 8 C -0.090 4.090 9 H 0.079 0.921 10 C 0.119 3.881 11 N -1.130 6.130 12 S 2.594 3.406 13 O -0.966 6.966 14 O -0.964 6.964 15 C -0.582 4.582 16 C 0.081 3.919 17 C -0.164 4.164 18 C -0.163 4.163 19 C -0.501 4.501 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.883 5.883 23 Si 0.896 3.104 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.410 0.590 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.027 0.973 42 H 0.095 0.905 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.095 0.905 46 H 0.028 0.972 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 -7.174 -18.312 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 H 0.103 0.897 4 C -0.010 4.010 5 O -0.303 6.303 6 C -0.016 4.016 7 C -0.192 4.192 8 C -0.110 4.110 9 H 0.097 0.903 10 C -0.008 4.008 11 N -0.887 5.887 12 S 2.692 3.308 13 O -0.956 6.956 14 O -0.954 6.954 15 C -0.715 4.715 16 C 0.079 3.921 17 C -0.221 4.221 18 C -0.221 4.221 19 C -0.541 4.541 20 H 0.077 0.923 21 C -0.138 4.138 22 N -0.521 5.521 23 Si 0.724 3.276 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.243 0.757 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.046 0.954 42 H 0.114 0.886 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.113 0.887 46 H 0.047 0.953 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.255 -6.650 -17.753 19.672 hybrid contribution -1.816 -0.337 0.211 1.859 sum 3.439 -6.987 -17.542 19.193 Atomic orbital electron populations 1.21859 0.94103 1.02312 1.02688 1.21804 0.96602 1.01069 0.94775 0.89679 1.22643 0.81009 0.99575 0.97762 1.87933 1.20330 1.76477 1.45516 1.22602 0.99103 0.94426 0.85492 1.22285 0.95541 1.02963 0.98384 1.21429 0.95816 0.99930 0.93796 0.90289 1.21385 0.99761 0.95610 0.84036 1.55838 1.85357 1.23937 1.23592 1.05580 0.79169 0.74086 0.71970 1.93553 1.80765 1.58953 1.62354 1.93538 1.69064 1.48455 1.84332 1.30520 1.20706 1.10204 1.10116 1.17936 0.97827 0.91399 0.84923 1.22273 0.96972 0.98727 1.04166 1.22268 0.96090 0.99452 1.04287 1.20979 0.90800 1.38637 1.03667 0.92282 1.24944 0.97525 0.95365 0.95953 1.69818 1.32356 1.40964 1.08998 0.86480 0.84895 0.78073 0.78192 1.19855 1.20951 1.20942 0.91460 0.92237 0.92396 0.93203 0.88837 0.93278 0.88832 0.90428 0.90363 0.91397 0.90112 0.75712 0.86556 0.86316 0.95375 0.88639 0.94493 0.94503 0.88676 0.95321 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.93 37.16 0.33 -0.76 16 2 C -0.12 -1.00 2.42 -90.48 -0.22 -1.22 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.07 0.53 6.13 37.21 0.23 0.76 16 5 O -0.38 -3.85 10.77 -35.23 -0.38 -4.23 16 6 C 0.06 0.51 6.84 37.21 0.25 0.76 16 7 C -0.15 -1.43 5.28 -26.59 -0.14 -1.57 16 8 C -0.09 -0.80 1.79 -90.44 -0.16 -0.97 16 9 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 10 C 0.12 1.32 5.37 -4.04 -0.02 1.29 16 11 N -1.13 -14.51 5.47 -10.61 -0.06 -14.57 16 12 S 2.59 46.81 4.49 -107.50 -0.48 46.33 16 13 O -0.97 -19.96 15.70 -57.54 -0.90 -20.87 16 14 O -0.96 -19.90 15.11 -57.54 -0.87 -20.77 16 15 C -0.58 -11.10 5.02 37.16 0.19 -10.92 16 16 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 17 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 18 C -0.16 -3.99 7.77 37.15 0.29 -3.71 16 19 C -0.50 -13.06 8.01 -34.44 -0.28 -13.34 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 22 N -0.88 -24.03 9.35 55.43 0.52 -23.51 16 23 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.71 7.65 -51.93 -0.40 0.31 16 36 H 0.07 0.67 6.30 -51.93 -0.33 0.34 16 37 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 38 H 0.41 4.42 8.36 -34.47 -0.29 4.13 16 39 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 40 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 41 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 42 H 0.10 2.53 6.07 -51.92 -0.32 2.21 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 46 H 0.03 0.66 5.47 -51.93 -0.28 0.38 16 47 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -31.89 364.13 -9.10 -40.99 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.98 Total: 5.57 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 0.59 Total: -29.91 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.46 Total: -38.08 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -2.15 Total: -45.86 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 46.81 SS G_CDS: -0.48 Total: 46.33 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.89 -9.10 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451537592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.240 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds