Wall clock time and date at job start Tue Mar 31 2020 12:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.57372 * 2 1 4 4 C 1.53096 * 109.52234 * 239.84213 * 2 1 3 5 5 O 1.42904 * 109.41275 * 182.48522 * 4 2 1 6 6 C 1.42903 * 114.09863 * 61.15841 * 5 4 2 7 7 C 1.53101 * 109.48666 * 298.88540 * 6 5 4 8 8 C 1.53177 * 109.52448 * 120.15545 * 2 1 3 9 9 H 1.08999 * 109.54421 * 56.92908 * 8 2 1 10 10 C 1.53001 * 109.54391 * 296.75575 * 8 2 1 11 11 N 1.46498 * 109.47089 * 175.17353 * 10 8 2 12 12 S 1.65602 * 119.99612 * 164.71987 * 11 10 8 13 13 O 1.42109 * 104.27511 * 181.34803 * 12 11 10 14 14 O 1.42098 * 104.28120 * 309.20801 * 12 11 10 15 15 C 1.81394 * 104.44973 * 65.28269 * 12 11 10 16 16 C 1.53003 * 109.47387 * 179.97438 * 15 12 11 17 17 C 1.53000 * 109.46517 * 299.99470 * 16 15 12 18 18 C 1.52993 * 109.47159 * 59.99605 * 16 15 12 19 19 C 1.50707 * 109.47138 * 179.97438 * 16 15 12 20 20 H 1.08001 * 119.99608 * 359.97438 * 19 16 15 21 21 C 1.37871 * 119.99869 * 179.97438 * 19 16 15 22 22 N 1.31520 * 119.99869 * 359.97438 * 21 19 16 23 23 Si 1.86795 * 120.00166 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47153 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47547 * 119.99725 * 23 21 19 26 26 H 1.48501 * 109.47187 * 240.00056 * 23 21 19 27 27 H 1.08997 * 109.46774 * 299.84336 * 1 2 3 28 28 H 1.08995 * 109.47225 * 59.84176 * 1 2 3 29 29 H 1.09002 * 109.47142 * 179.84685 * 1 2 3 30 30 H 1.09004 * 109.47934 * 302.46853 * 4 2 1 31 31 H 1.09005 * 109.47865 * 62.48993 * 4 2 1 32 32 H 1.08999 * 109.47567 * 58.82177 * 6 5 4 33 33 H 1.08996 * 109.47587 * 178.85516 * 6 5 4 34 34 H 1.08998 * 109.45506 * 297.61919 * 7 6 5 35 35 H 1.08997 * 109.59617 * 177.41838 * 7 6 5 36 36 H 1.08996 * 109.47377 * 55.17511 * 10 8 2 37 37 H 1.08999 * 109.46886 * 295.17649 * 10 8 2 38 38 H 0.97001 * 120.00384 * 345.00465 * 11 10 8 39 39 H 1.09009 * 109.47044 * 299.99503 * 15 12 11 40 40 H 1.09001 * 109.47747 * 59.99183 * 15 12 11 41 41 H 1.08994 * 109.47224 * 60.00651 * 17 16 15 42 42 H 1.09008 * 109.46641 * 179.97438 * 17 16 15 43 43 H 1.09001 * 109.47344 * 299.99451 * 17 16 15 44 44 H 1.09002 * 109.47371 * 59.99841 * 18 16 15 45 45 H 1.08994 * 109.47114 * 180.02562 * 18 16 15 46 46 H 1.08998 * 109.47012 * 299.99873 * 18 16 15 47 47 H 0.97007 * 119.99442 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4695 -0.7743 -1.2163 6 6 4.0044 -1.4816 -0.0957 7 6 3.5716 -0.7890 1.1993 8 6 2.0420 -0.7252 1.2483 9 1 1.6356 -1.7363 1.2750 10 6 1.6012 0.0367 2.4998 11 7 1.9916 -0.7175 3.6935 12 16 1.9907 0.0203 5.1760 13 8 2.4454 -0.9873 6.0691 14 8 2.7375 1.2123 4.9748 15 6 0.2461 0.4071 5.4880 16 6 0.1122 1.0997 6.8457 17 6 0.6332 0.1719 7.9450 18 6 0.9285 2.3936 6.8409 19 6 -1.3372 1.4217 7.1046 20 1 -2.0875 1.1589 6.3736 21 6 -1.7051 2.0516 8.2745 22 7 -0.7913 2.3710 9.1648 23 14 -3.5016 2.4500 8.5957 24 1 -4.3236 1.9900 7.4477 25 1 -3.9481 1.7603 9.8327 26 1 -3.6612 3.9171 8.7618 27 1 -0.3633 0.5114 0.8914 28 1 -0.3633 0.5163 -0.8885 29 1 -0.3633 -1.0277 -0.0027 30 1 1.6432 -1.7393 -1.2677 31 1 1.7157 -0.1886 -2.1389 32 1 3.6316 -2.5058 -0.1007 33 1 5.0926 -1.4903 -0.1572 34 1 3.9792 0.2216 1.2243 35 1 3.9403 -1.3528 2.0562 36 1 0.5185 0.1614 2.4868 37 1 2.0796 1.0160 2.5161 38 1 2.2546 -1.6479 3.6149 39 1 -0.1253 1.0678 4.7045 40 1 -0.3355 -0.5147 5.4918 41 1 1.6815 -0.0605 7.7577 42 1 0.5382 0.6655 8.9123 43 1 0.0515 -0.7499 7.9485 44 1 0.5574 3.0546 6.0576 45 1 0.8334 2.8868 7.8082 46 1 1.9768 2.1611 6.6535 47 1 -1.0503 2.8139 9.9881 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451537592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:28 Heat of formation + Delta-G solvation = -162.053783 kcal Electronic energy + Delta-G solvation = -26561.355653 eV Core-core repulsion = 22869.708131 eV Total energy + Delta-G solvation = -3691.647521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.67133 -38.13372 -38.10953 -37.25460 -36.85791 -34.62508 -33.62794 -32.71351 -28.41771 -28.14430 -27.69089 -27.44919 -27.23647 -23.72666 -23.14380 -21.44774 -21.02040 -20.10630 -18.74396 -17.88896 -17.55912 -17.05522 -16.90449 -16.73263 -16.53891 -16.08602 -15.87734 -15.35119 -15.07956 -14.76266 -14.59087 -14.43414 -14.40558 -13.84652 -13.82981 -13.27185 -13.20646 -13.02194 -12.90814 -12.89079 -12.82642 -12.75226 -12.64529 -12.49918 -12.18703 -12.11940 -12.03904 -11.94081 -11.81267 -11.56675 -11.47059 -11.30659 -11.14886 -10.67671 -10.47478 -10.42115 -10.16131 -8.02997 -6.21595 -0.59197 1.43148 1.46291 1.55659 1.92583 2.44311 2.86405 3.01261 3.19493 3.32894 3.63748 3.72964 3.75295 3.96806 4.03071 4.19088 4.31514 4.38108 4.42534 4.47442 4.54551 4.60321 4.67814 4.73671 4.80433 4.81634 4.86819 4.87389 4.89706 4.99706 5.03983 5.07375 5.10831 5.20418 5.23112 5.38587 5.39188 5.50988 5.51571 5.65069 5.97514 6.11453 6.15146 6.30638 6.34271 6.83674 7.46917 8.97017 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.003378 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.794111 B = 8288.114079 C = 9152.442218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 H 0.073 0.927 4 C 0.064 3.936 5 O -0.405 6.405 6 C 0.060 3.940 7 C -0.157 4.157 8 C -0.085 4.085 9 H 0.096 0.904 10 C 0.109 3.891 11 N -1.111 6.111 12 S 2.614 3.386 13 O -0.994 6.994 14 O -0.993 6.993 15 C -0.586 4.586 16 C 0.068 3.932 17 C -0.160 4.160 18 C -0.159 4.159 19 C -0.515 4.515 20 H 0.064 0.936 21 C 0.016 3.984 22 N -0.909 5.909 23 Si 0.955 3.045 24 H -0.264 1.264 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.423 0.577 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.032 0.968 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.069 0.931 46 H 0.032 0.968 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -8.340 -20.315 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.139 4.139 3 H 0.091 0.909 4 C -0.012 4.012 5 O -0.324 6.324 6 C -0.016 4.016 7 C -0.194 4.194 8 C -0.105 4.105 9 H 0.114 0.886 10 C -0.017 4.017 11 N -0.873 5.873 12 S 2.711 3.289 13 O -0.984 6.984 14 O -0.982 6.982 15 C -0.718 4.718 16 C 0.066 3.934 17 C -0.218 4.218 18 C -0.217 4.217 19 C -0.554 4.554 20 H 0.083 0.917 21 C -0.183 4.183 22 N -0.547 5.547 23 Si 0.781 3.219 24 H -0.188 1.188 25 H -0.211 1.211 26 H -0.210 1.210 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.259 0.741 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.051 0.949 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.074 -7.826 -19.757 21.638 hybrid contribution -1.406 0.020 0.774 1.605 sum 2.667 -7.806 -18.983 20.698 Atomic orbital electron populations 1.21860 0.93118 1.03005 1.02895 1.21767 0.97353 1.00339 0.94467 0.90868 1.22777 0.80068 1.00446 0.97931 1.87909 1.21590 1.76875 1.46050 1.22669 0.99592 0.94837 0.84537 1.22301 0.95918 1.02141 0.99088 1.21430 0.95540 1.00581 0.92959 0.88564 1.21652 1.00870 0.95193 0.83958 1.55321 1.85070 1.24588 1.22277 1.04670 0.78316 0.73294 0.72582 1.93508 1.81088 1.59514 1.64299 1.93502 1.69602 1.50073 1.85049 1.30449 1.22334 1.11167 1.07887 1.17930 0.96797 0.91322 0.87345 1.22208 0.97422 0.98785 1.03389 1.22197 0.96638 0.99947 1.02925 1.21333 0.91988 1.38360 1.03749 0.91748 1.25690 1.01076 0.95521 0.96019 1.69962 1.33975 1.41540 1.09270 0.85556 0.80719 0.77556 0.78085 1.18816 1.21062 1.21034 0.91994 0.91359 0.91434 0.91888 0.87844 0.91772 0.88288 0.92155 0.90284 0.89571 0.91403 0.74091 0.84509 0.84364 0.94959 0.91128 0.94076 0.94077 0.91190 0.94924 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.93 71.98 0.64 -1.10 16 2 C -0.12 -1.68 2.42 -10.70 -0.03 -1.71 16 3 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 4 C 0.06 0.86 6.13 72.01 0.44 1.30 16 5 O -0.41 -7.42 10.77 -148.98 -1.60 -9.02 16 6 C 0.06 0.90 6.84 72.02 0.49 1.39 16 7 C -0.16 -2.68 5.28 30.69 0.16 -2.52 16 8 C -0.09 -1.32 1.79 -10.67 -0.02 -1.34 16 9 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 10 C 0.11 2.19 5.37 86.38 0.46 2.65 16 11 N -1.11 -26.22 5.47 -187.50 -1.03 -27.24 16 12 S 2.61 91.31 4.49 -56.49 -0.25 91.06 16 13 O -0.99 -40.22 15.70 -127.65 -2.00 -42.23 16 14 O -0.99 -40.51 15.11 -127.65 -1.93 -42.43 16 15 C -0.59 -21.33 5.02 71.98 0.36 -20.97 16 16 C 0.07 3.24 0.52 -52.93 -0.03 3.21 16 17 C -0.16 -7.92 7.78 71.98 0.56 -7.36 16 18 C -0.16 -7.85 7.77 71.98 0.56 -7.30 16 19 C -0.52 -26.43 8.01 25.60 0.21 -26.22 16 20 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 21 C 0.02 0.85 5.15 84.65 0.44 1.29 16 22 N -0.91 -50.17 9.35 21.45 0.20 -49.97 16 23 Si 0.95 41.72 29.54 68.60 2.03 43.75 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 H 0.06 0.78 6.43 -2.39 -0.02 0.77 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.31 7.65 -2.39 -0.02 1.29 16 36 H 0.09 1.45 6.30 -2.39 -0.02 1.43 16 37 H 0.07 1.57 7.68 -2.39 -0.02 1.55 16 38 H 0.42 8.05 8.36 -96.74 -0.81 7.24 16 39 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 40 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 41 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 42 H 0.07 3.82 6.07 -2.38 -0.01 3.81 16 43 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 46 H 0.03 1.54 5.47 -2.39 -0.01 1.52 16 47 H 0.26 13.77 8.31 -92.70 -0.77 13.00 16 Total: -1.00 -67.92 364.13 -0.19 -68.11 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.14 Total: 26.66 kcal Atomic # 6 Polarization: -62.93 SS G_CDS: 4.25 Total: -58.67 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -0.82 Total: -77.22 kcal Atomic # 8 Polarization: -88.15 SS G_CDS: -5.54 Total: -93.69 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 91.31 SS G_CDS: -0.25 Total: 91.06 kcal Total: -67.92 -0.19 -68.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451537592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.945 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds