Wall clock time and date at job start Tue Mar 31 2020 12:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.52444 * 2 1 4 4 C 1.53097 * 109.52266 * 120.18075 * 2 1 3 5 5 O 1.42902 * 109.41463 * 177.51266 * 4 2 1 6 6 C 1.42903 * 114.09988 * 298.84344 * 5 4 2 7 7 C 1.53087 * 109.41436 * 61.15848 * 6 5 4 8 8 C 1.53175 * 109.52333 * 239.86569 * 2 1 3 9 9 H 1.08999 * 109.54633 * 303.07122 * 8 2 1 10 10 C 1.53001 * 109.54150 * 63.24999 * 8 2 1 11 11 N 1.46498 * 109.47089 * 184.99605 * 10 8 2 12 12 S 1.65602 * 119.99612 * 164.71987 * 11 10 8 13 13 O 1.42109 * 104.27511 * 181.34803 * 12 11 10 14 14 O 1.42098 * 104.28120 * 309.20801 * 12 11 10 15 15 C 1.81394 * 104.44973 * 65.28269 * 12 11 10 16 16 C 1.53003 * 109.47387 * 179.97438 * 15 12 11 17 17 C 1.53000 * 109.46517 * 299.99470 * 16 15 12 18 18 C 1.52993 * 109.47159 * 59.99605 * 16 15 12 19 19 C 1.50707 * 109.47138 * 179.97438 * 16 15 12 20 20 H 1.08001 * 119.99608 * 359.97438 * 19 16 15 21 21 C 1.37871 * 119.99869 * 179.97438 * 19 16 15 22 22 N 1.31520 * 119.99869 * 359.97438 * 21 19 16 23 23 Si 1.86795 * 120.00166 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47285 * 89.99841 * 23 21 19 25 25 H 1.48504 * 109.47506 * 210.00094 * 23 21 19 26 26 H 1.48502 * 109.47051 * 330.00121 * 23 21 19 27 27 H 1.09004 * 109.47072 * 180.13036 * 1 2 3 28 28 H 1.09000 * 109.47092 * 300.12920 * 1 2 3 29 29 H 1.08992 * 109.46992 * 60.13342 * 1 2 3 30 30 H 1.08994 * 109.48458 * 297.50239 * 4 2 1 31 31 H 1.09001 * 109.47958 * 57.53414 * 4 2 1 32 32 H 1.09000 * 109.47993 * 181.14065 * 6 5 4 33 33 H 1.08993 * 109.48148 * 301.16210 * 6 5 4 34 34 H 1.09000 * 109.52682 * 182.48363 * 7 6 5 35 35 H 1.09007 * 109.52447 * 62.29398 * 7 6 5 36 36 H 1.08996 * 109.47377 * 64.99763 * 10 8 2 37 37 H 1.08999 * 109.46886 * 304.99901 * 10 8 2 38 38 H 0.97001 * 120.00384 * 345.00465 * 11 10 8 39 39 H 1.09009 * 109.47044 * 299.99503 * 15 12 11 40 40 H 1.09001 * 109.47747 * 59.99183 * 15 12 11 41 41 H 1.08994 * 109.47224 * 60.00651 * 17 16 15 42 42 H 1.09008 * 109.46641 * 179.97438 * 17 16 15 43 43 H 1.09001 * 109.47344 * 299.99451 * 17 16 15 44 44 H 1.09002 * 109.47371 * 59.99841 * 18 16 15 45 45 H 1.08994 * 109.47114 * 180.02562 * 18 16 15 46 46 H 1.08998 * 109.47012 * 299.99873 * 18 16 15 47 47 H 0.97007 * 119.99442 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7254 1.2473 5 8 3.4694 -0.7748 1.2160 6 6 4.0043 -1.4817 0.0951 7 6 3.5716 -0.7866 -1.1984 8 6 2.0419 -0.7248 -1.2486 9 1 1.6354 -1.7358 -1.2757 10 6 1.6012 0.0377 -2.4997 11 7 1.9879 -0.7180 -3.6937 12 16 1.3228 -0.3420 -5.1629 13 8 1.8969 -1.2840 -6.0588 14 8 -0.0770 -0.3217 -4.9191 15 6 1.9309 1.3290 -5.5208 16 6 1.3795 1.7944 -6.8700 17 6 1.8444 0.8364 -7.9686 18 6 -0.1495 1.8082 -6.8187 19 6 1.8843 3.1830 -7.1670 20 1 2.5331 3.6837 -6.4635 21 6 1.5178 3.8142 -8.3367 22 7 0.7281 3.2043 -9.1935 23 14 2.1439 5.5351 -8.7052 24 1 3.4274 5.4466 -9.4468 25 1 1.1443 6.2595 -9.5305 26 1 2.3580 6.2673 -7.4311 27 1 -0.3633 -1.0277 0.0023 28 1 -0.3633 0.5158 0.8888 29 1 -0.3633 0.5117 -0.8911 30 1 1.7159 -0.1895 2.1388 31 1 1.6431 -1.7398 1.2670 32 1 5.0925 -1.4904 0.1566 33 1 3.6317 -2.5059 0.0998 34 1 3.9417 -1.3491 -2.0556 35 1 3.9780 0.2246 -1.2222 36 1 2.0820 1.0158 -2.5173 37 1 0.5188 0.1652 -2.4851 38 1 2.6304 -1.4412 -3.6229 39 1 1.6001 2.0115 -4.7378 40 1 3.0202 1.3192 -5.5577 41 1 1.4790 -0.1677 -7.7537 42 1 1.4512 1.1677 -8.9298 43 1 2.9338 0.8267 -8.0052 44 1 -0.4807 2.4906 -6.0359 45 1 -0.5423 2.1393 -7.7800 46 1 -0.5149 0.8040 -6.6037 47 1 0.4705 3.6483 -10.0166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451537593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:31 Heat of formation + Delta-G solvation = -161.769301 kcal Electronic energy + Delta-G solvation = -26558.344354 eV Core-core repulsion = 22866.709169 eV Total energy + Delta-G solvation = -3691.635185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.67582 -38.13632 -38.11190 -37.26047 -36.86163 -34.63904 -33.63041 -32.68982 -28.41883 -28.15933 -27.68914 -27.46188 -27.23880 -23.73604 -23.15487 -21.43911 -20.90271 -20.19127 -18.77709 -17.90724 -17.56514 -17.05603 -16.91084 -16.74494 -16.54098 -16.11405 -15.73504 -15.34709 -14.99497 -14.77583 -14.74483 -14.49548 -14.40821 -13.84631 -13.82451 -13.34425 -13.10118 -12.99147 -12.89933 -12.88535 -12.84650 -12.77297 -12.62369 -12.49667 -12.17894 -12.14014 -12.06561 -11.95837 -11.85543 -11.56488 -11.40417 -11.34042 -11.12595 -10.68594 -10.41615 -10.36033 -10.28476 -8.03069 -6.21672 -0.59629 1.43944 1.45947 1.54375 1.91790 2.44201 2.85822 3.01706 3.19278 3.31790 3.65316 3.72767 3.74120 3.97069 4.02799 4.18677 4.32198 4.35186 4.42240 4.48423 4.54273 4.60602 4.67115 4.74624 4.81277 4.82380 4.86623 4.87235 4.89798 4.99814 5.02685 5.07347 5.10600 5.19718 5.22725 5.36920 5.38940 5.49967 5.51170 5.64728 5.97774 6.11238 6.13892 6.30840 6.34305 6.83206 7.46755 8.96736 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.019157 B = 0.003357 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.234026 B = 8340.018576 C = 8764.848279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 H 0.081 0.919 4 C 0.065 3.935 5 O -0.403 6.403 6 C 0.058 3.942 7 C -0.154 4.154 8 C -0.088 4.088 9 H 0.083 0.917 10 C 0.108 3.892 11 N -1.112 6.112 12 S 2.615 3.385 13 O -0.994 6.994 14 O -0.991 6.991 15 C -0.586 4.586 16 C 0.068 3.932 17 C -0.160 4.160 18 C -0.159 4.159 19 C -0.517 4.517 20 H 0.063 0.937 21 C 0.017 3.983 22 N -0.908 5.908 23 Si 0.954 3.046 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.267 1.267 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.422 0.578 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.032 0.968 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.224 -7.694 20.231 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 H 0.100 0.900 4 C -0.011 4.011 5 O -0.322 6.322 6 C -0.019 4.019 7 C -0.192 4.192 8 C -0.108 4.108 9 H 0.102 0.898 10 C -0.017 4.017 11 N -0.874 5.874 12 S 2.712 3.288 13 O -0.984 6.984 14 O -0.981 6.981 15 C -0.719 4.719 16 C 0.066 3.934 17 C -0.218 4.218 18 C -0.217 4.217 19 C -0.556 4.556 20 H 0.081 0.919 21 C -0.182 4.182 22 N -0.547 5.547 23 Si 0.780 3.220 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.191 1.191 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.258 0.742 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.536 -8.030 19.701 21.567 hybrid contribution 0.578 1.058 -0.782 1.437 sum 4.114 -6.972 18.920 20.579 Atomic orbital electron populations 1.21871 0.93826 1.02642 1.02784 1.21760 0.96823 1.00713 0.94495 0.90030 1.22742 0.80236 1.00201 0.97945 1.87910 1.21297 1.76823 1.46187 1.22694 0.99742 0.94689 0.84742 1.22311 0.94958 1.02815 0.99125 1.21427 0.96226 1.00132 0.92977 0.89835 1.21654 1.00942 0.95227 0.83920 1.55354 1.61401 1.47729 1.22878 1.04650 0.74172 0.77364 0.72589 1.93508 1.79589 1.61007 1.64294 1.93499 1.32257 1.87762 1.84546 1.30453 1.12458 1.20924 1.08041 1.17927 0.92290 0.95748 0.87413 1.22208 0.99903 0.96318 1.03357 1.22192 0.97796 0.98871 1.02811 1.21298 1.29908 0.99694 1.04687 0.91883 1.25675 0.95167 1.01239 0.96121 1.69952 1.35693 1.38554 1.10484 0.85619 0.77867 0.80276 0.78227 1.20436 1.21294 1.19125 0.92119 0.91043 0.92432 0.87759 0.92429 0.87861 0.92376 0.89698 0.90813 0.90393 0.90405 0.74181 0.84589 0.84504 0.94910 0.91093 0.94158 0.94057 0.91168 0.94845 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.93 71.98 0.64 -1.48 16 2 C -0.12 -1.69 2.41 -10.70 -0.03 -1.72 16 3 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.07 0.89 6.13 72.01 0.44 1.33 16 5 O -0.40 -7.02 10.77 -148.98 -1.60 -8.62 16 6 C 0.06 0.79 6.84 72.01 0.49 1.28 16 7 C -0.15 -2.19 5.26 30.68 0.16 -2.03 16 8 C -0.09 -1.38 1.87 -10.67 -0.02 -1.40 16 9 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 10 C 0.11 2.19 5.37 86.38 0.46 2.65 16 11 N -1.11 -26.50 5.77 -187.50 -1.08 -27.58 16 12 S 2.62 91.32 4.49 -56.49 -0.25 91.06 16 13 O -0.99 -40.25 15.70 -127.65 -2.00 -42.25 16 14 O -0.99 -39.96 15.11 -127.65 -1.93 -41.89 16 15 C -0.59 -21.53 5.02 71.98 0.36 -21.17 16 16 C 0.07 3.26 0.52 -52.93 -0.03 3.23 16 17 C -0.16 -7.92 7.78 71.98 0.56 -7.36 16 18 C -0.16 -7.81 7.77 71.98 0.56 -7.25 16 19 C -0.52 -26.66 8.01 25.60 0.21 -26.45 16 20 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 21 C 0.02 0.91 5.15 84.65 0.44 1.35 16 22 N -0.91 -50.17 9.35 21.45 0.20 -49.97 16 23 Si 0.95 41.90 29.54 68.60 2.03 43.92 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 25 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.92 6.42 -2.39 -0.02 0.91 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 1.06 7.02 -2.39 -0.02 1.04 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.72 5.83 -2.39 -0.01 1.70 16 38 H 0.42 8.22 7.44 -96.74 -0.72 7.50 16 39 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 40 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 41 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 42 H 0.07 3.84 6.07 -2.38 -0.01 3.83 16 43 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 46 H 0.03 1.56 5.47 -2.39 -0.01 1.55 16 47 H 0.26 13.83 8.31 -92.70 -0.77 13.06 16 Total: -1.00 -67.23 362.94 -0.16 -67.39 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.23 Total: 26.97 kcal Atomic # 6 Polarization: -63.29 SS G_CDS: 4.25 Total: -59.04 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -0.88 Total: -77.55 kcal Atomic # 8 Polarization: -87.23 SS G_CDS: -5.54 Total: -92.76 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 91.32 SS G_CDS: -0.25 Total: 91.06 kcal Total: -67.23 -0.16 -67.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451537593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.375 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds