Wall clock time and date at job start Tue Mar 31 2020 12:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00197 * 2 1 4 4 H 1.09000 * 109.47063 * 22.58008 * 3 2 1 5 5 C 1.52995 * 109.47221 * 142.58555 * 3 2 1 6 6 H 1.09006 * 109.47253 * 185.00067 * 5 3 2 7 7 C 1.53009 * 109.47198 * 304.99463 * 5 3 2 8 8 N 1.46496 * 109.47392 * 64.99663 * 5 3 2 9 9 S 1.65603 * 120.00072 * 145.00203 * 8 5 3 10 10 O 1.42095 * 104.27868 * 181.07036 * 9 8 5 11 11 O 1.42098 * 104.27733 * 308.92817 * 9 8 5 12 12 C 1.81398 * 104.45042 * 65.00070 * 9 8 5 13 13 C 1.53004 * 109.47089 * 180.02562 * 12 9 8 14 14 C 1.52998 * 109.46740 * 299.99508 * 13 12 9 15 15 C 1.52994 * 109.47434 * 59.99708 * 13 12 9 16 16 C 1.50701 * 109.47137 * 180.02562 * 13 12 9 17 17 H 1.08003 * 120.00080 * 359.97438 * 16 13 12 18 18 C 1.37872 * 120.00247 * 179.97438 * 16 13 12 19 19 N 1.31520 * 119.99632 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00303 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46667 * 89.99955 * 20 18 16 22 22 H 1.48497 * 109.47118 * 209.99752 * 20 18 16 23 23 H 1.48497 * 109.46763 * 330.00080 * 20 18 16 24 24 C 1.53000 * 109.46489 * 262.58241 * 3 2 1 25 25 C 1.52998 * 117.49454 * 133.95613 * 24 3 2 26 26 C 1.53001 * 117.50105 * 65.29790 * 24 3 2 27 27 H 1.08999 * 109.47420 * 185.55983 * 1 2 3 28 28 H 1.08998 * 109.46976 * 305.56647 * 1 2 3 29 29 H 1.09005 * 109.46781 * 65.56078 * 1 2 3 30 30 H 1.09006 * 109.46525 * 60.00158 * 7 5 3 31 31 H 1.08998 * 109.47470 * 179.97438 * 7 5 3 32 32 H 1.08999 * 109.47090 * 300.00868 * 7 5 3 33 33 H 0.97000 * 120.00303 * 325.00104 * 8 5 3 34 34 H 1.09009 * 109.46975 * 299.99798 * 12 9 8 35 35 H 1.08999 * 109.47074 * 59.99961 * 12 9 8 36 36 H 1.08999 * 109.47087 * 60.00374 * 14 13 12 37 37 H 1.09003 * 109.46879 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47341 * 300.00436 * 14 13 12 39 39 H 1.08999 * 109.47299 * 60.00147 * 15 13 12 40 40 H 1.08995 * 109.47560 * 180.02562 * 15 13 12 41 41 H 1.09007 * 109.47011 * 300.00409 * 15 13 12 42 42 H 0.97000 * 119.99728 * 180.02562 * 19 18 16 43 43 H 1.08996 * 115.55199 * 279.61777 * 24 3 2 44 44 H 1.09004 * 117.50177 * 359.97438 * 25 24 3 45 45 H 1.09002 * 117.49848 * 145.02107 * 25 24 3 46 46 H 1.08991 * 117.49525 * 214.97732 * 26 24 3 47 47 H 1.09001 * 117.49433 * 359.96690 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2912 2.0233 0.3946 5 6 3.2643 1.3054 0.8764 6 1 3.6575 2.3195 0.9483 7 6 2.9093 0.7957 2.2747 8 7 4.2767 0.4303 0.2802 9 16 5.8818 0.8202 0.3990 10 8 6.5481 -0.2209 -0.3020 11 8 5.9497 2.1663 -0.0509 12 6 6.2410 0.7234 2.1744 13 6 7.7121 1.0674 2.4166 14 6 8.5987 0.0747 1.6621 15 6 7.9935 2.4854 1.9159 16 6 8.0106 0.9864 3.8915 17 1 7.2292 0.7170 4.5867 18 6 9.2813 1.2562 4.3535 19 7 10.2328 1.5847 3.5071 20 14 9.6512 1.1565 6.1819 21 1 10.0878 -0.2210 6.5241 22 1 10.7317 2.1169 6.5213 23 1 8.4282 1.4943 6.9534 24 6 2.3878 1.6955 -1.4305 25 6 2.0013 3.0975 -1.9057 26 6 1.2500 1.8745 -2.4376 27 1 -0.3634 -1.0228 0.0996 28 1 -0.3633 0.5977 0.8359 29 1 -0.3633 0.4252 -0.9356 30 1 2.5162 -0.2184 2.2028 31 1 3.8028 0.7952 2.8990 32 1 2.1560 1.4468 2.7183 33 1 4.0069 -0.3775 -0.1841 34 1 5.6095 1.4310 2.7119 35 1 6.0401 -0.2867 2.5312 36 1 8.3829 0.1328 0.5953 37 1 9.6468 0.3200 1.8343 38 1 8.3982 -0.9356 2.0189 39 1 7.3618 3.1926 2.4534 40 1 9.0415 2.7303 2.0880 41 1 7.7776 2.5435 0.8490 42 1 11.1268 1.7742 3.8320 43 1 3.3255 1.2798 -1.7992 44 1 1.4777 3.7418 -1.1995 45 1 2.6845 3.6040 -2.5875 46 1 1.4393 1.5768 -3.4689 47 1 0.2325 1.7138 -2.0812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451972869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:52 Heat of formation + Delta-G solvation = -97.208942 kcal Electronic energy + Delta-G solvation = -27009.428185 eV Core-core repulsion = 23320.592547 eV Total energy + Delta-G solvation = -3688.835638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.51689 -36.50926 -36.25047 -36.21238 -35.58207 -35.22133 -31.66131 -30.02010 -28.00690 -26.60323 -25.86648 -25.68884 -25.20553 -22.60142 -21.79788 -20.63393 -19.60824 -18.81708 -17.51754 -16.77187 -16.50364 -15.95438 -15.70185 -15.31397 -14.95281 -14.88536 -14.70879 -14.35462 -13.65136 -13.36191 -13.25734 -12.96871 -12.79789 -12.50597 -12.21367 -12.03375 -12.01728 -11.68577 -11.63622 -11.48967 -11.37253 -11.14326 -11.05006 -11.01327 -10.86737 -10.66285 -10.48842 -10.35431 -10.29175 -10.24652 -10.06517 -9.73282 -9.62468 -9.56966 -9.14634 -8.64383 -8.38425 -6.01695 -4.13567 0.93965 3.19106 3.26725 3.33977 3.35815 3.41831 3.83231 4.33463 4.37293 4.43159 4.57023 4.77441 4.87436 4.88987 4.98579 5.06486 5.10938 5.19196 5.23753 5.30882 5.37028 5.41300 5.54410 5.59692 5.67759 5.76263 5.78021 5.85626 5.94351 6.10315 6.15941 6.26885 6.45208 6.73387 6.82485 6.93802 6.98136 7.06102 7.29558 7.34494 7.53173 7.69572 8.00328 8.11864 8.35140 8.84914 9.51750 10.99598 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.022763 B = 0.003704 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.775012 B = 7558.392856 C = 8049.349915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.119 3.881 4 H 0.072 0.928 5 C 0.153 3.847 6 H 0.102 0.898 7 C -0.180 4.180 8 N -1.118 6.118 9 S 2.593 3.407 10 O -0.966 6.966 11 O -0.964 6.964 12 C -0.584 4.584 13 C 0.082 3.918 14 C -0.164 4.164 15 C -0.163 4.163 16 C -0.501 4.501 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.895 3.105 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.170 4.170 25 C -0.172 4.172 26 C -0.180 4.180 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.416 0.584 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.027 0.973 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.262 0.738 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.442 -0.038 -6.556 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.059 3.941 4 H 0.090 0.910 5 C 0.045 3.955 6 H 0.120 0.880 7 C -0.238 4.238 8 N -0.875 5.875 9 S 2.690 3.310 10 O -0.957 6.957 11 O -0.954 6.954 12 C -0.718 4.718 13 C 0.080 3.920 14 C -0.221 4.221 15 C -0.221 4.221 16 C -0.540 4.540 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.522 5.522 20 Si 0.723 3.277 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.188 4.188 25 C -0.209 4.209 26 C -0.217 4.217 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.250 0.750 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.046 0.954 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.132 0.868 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.112 0.888 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.543 0.241 -7.235 19.906 hybrid contribution -0.366 -0.351 1.488 1.572 sum -18.909 -0.111 -5.746 19.763 Atomic orbital electron populations 1.22897 0.81441 1.02655 0.99852 1.87912 1.19175 1.27149 1.94810 1.21905 0.94312 0.85084 0.92763 0.90980 1.20898 0.87892 0.94657 0.92088 0.87992 1.22426 1.02756 1.02919 0.95748 1.55790 1.24347 1.36201 1.71151 1.05606 0.71817 0.74370 0.79182 1.93550 1.72044 1.58106 1.71975 1.93538 1.84832 1.36947 1.80120 1.30635 1.10167 1.09817 1.21131 1.17925 0.83531 0.92892 0.97687 1.22272 1.05342 0.98306 0.96213 1.22264 1.05375 0.97379 0.97046 1.20945 0.95529 1.47181 0.90371 0.92328 1.24938 0.96211 0.94853 0.97745 1.69808 1.02258 1.46526 1.33596 0.86546 0.78030 0.77870 0.85243 1.20674 1.21162 1.19972 1.22764 1.00398 1.00387 0.95277 1.22992 1.03510 0.90611 1.03828 1.22950 0.96626 1.02913 0.99173 0.89767 0.94117 0.93980 0.90889 0.91155 0.91823 0.75006 0.86410 0.86245 0.95417 0.88684 0.94488 0.94525 0.88722 0.95312 0.92781 0.86784 0.88745 0.88289 0.88751 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.74 101.05 1.08 1.29 16 2 O -0.37 -3.87 9.15 -35.23 -0.32 -4.19 16 3 C 0.12 1.23 2.18 -26.73 -0.06 1.18 16 4 H 0.07 0.62 7.43 -51.93 -0.39 0.23 16 5 C 0.15 1.85 2.72 -67.93 -0.18 1.66 16 6 H 0.10 1.26 7.48 -51.93 -0.39 0.88 16 7 C -0.18 -1.94 9.28 37.16 0.35 -1.60 16 8 N -1.12 -15.75 4.31 -4.89 -0.02 -15.77 16 9 S 2.59 48.28 4.47 -107.50 -0.48 47.80 16 10 O -0.97 -20.72 15.70 -57.54 -0.90 -21.62 16 11 O -0.96 -19.98 15.01 -57.54 -0.86 -20.85 16 12 C -0.58 -11.37 4.16 37.16 0.15 -11.22 16 13 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 14 C -0.16 -4.08 7.77 37.16 0.29 -3.79 16 15 C -0.16 -4.01 7.78 37.15 0.29 -3.72 16 16 C -0.50 -13.13 8.01 -34.44 -0.28 -13.40 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 19 N -0.88 -24.19 9.35 55.43 0.52 -23.67 16 20 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.17 -1.89 5.19 -90.62 -0.47 -2.36 16 25 C -0.17 -1.67 10.18 -26.69 -0.27 -1.94 16 26 C -0.18 -1.62 9.94 -26.69 -0.27 -1.89 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.26 7.97 -51.93 -0.41 -0.16 16 29 H 0.04 0.28 5.89 -51.93 -0.31 -0.03 16 30 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 31 H 0.07 0.82 5.78 -51.93 -0.30 0.52 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.42 5.44 8.54 -34.47 -0.29 5.14 16 34 H 0.12 2.05 6.78 -51.92 -0.35 1.70 16 35 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 36 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 37 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 41 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.11 1.49 7.36 -51.93 -0.38 1.10 16 44 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 45 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.71 6.10 -51.93 -0.32 0.39 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -31.62 367.56 -8.74 -40.37 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.65 Total: 9.04 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 0.46 Total: -32.27 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.50 Total: -39.43 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -2.09 Total: -46.66 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 48.28 SS G_CDS: -0.48 Total: 47.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.62 -8.74 -40.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451972869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.844 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds