Wall clock time and date at job start Tue Mar 31 2020 12:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00120 * 2 1 4 4 H 1.08998 * 109.47055 * 32.82406 * 3 2 1 5 5 C 1.52996 * 109.47639 * 272.82310 * 3 2 1 6 6 H 1.08996 * 109.46897 * 54.58200 * 5 3 2 7 7 C 1.52997 * 109.47463 * 174.58554 * 5 3 2 8 8 N 1.46504 * 109.46911 * 294.58839 * 5 3 2 9 9 S 1.65601 * 119.99967 * 143.30923 * 8 5 3 10 10 O 1.42109 * 104.27555 * 180.79410 * 9 8 5 11 11 O 1.42102 * 104.27469 * 308.64640 * 9 8 5 12 12 C 1.81395 * 104.45017 * 64.72258 * 9 8 5 13 13 C 1.52997 * 109.46750 * 180.02562 * 12 9 8 14 14 C 1.53000 * 109.47326 * 299.99433 * 13 12 9 15 15 C 1.52998 * 109.47495 * 60.00034 * 13 12 9 16 16 C 1.50700 * 109.47023 * 179.97438 * 13 12 9 17 17 H 1.08002 * 120.00318 * 359.97438 * 16 13 12 18 18 C 1.37880 * 120.00178 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00231 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00081 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47165 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47103 * 119.99881 * 20 18 16 23 23 H 1.48494 * 109.47076 * 240.00296 * 20 18 16 24 24 C 1.53006 * 109.47024 * 152.82207 * 3 2 1 25 25 C 1.53000 * 117.49874 * 8.74800 * 24 3 2 26 26 C 1.53005 * 117.49911 * 300.08848 * 24 3 2 27 27 H 1.09004 * 109.47394 * 55.22263 * 1 2 3 28 28 H 1.08993 * 109.47597 * 175.22439 * 1 2 3 29 29 H 1.09003 * 109.46923 * 295.22860 * 1 2 3 30 30 H 1.08995 * 109.47047 * 300.00266 * 7 5 3 31 31 H 1.09005 * 109.47124 * 59.99981 * 7 5 3 32 32 H 1.08996 * 109.47233 * 179.97438 * 7 5 3 33 33 H 0.97003 * 119.99761 * 323.02719 * 8 5 3 34 34 H 1.09002 * 109.47179 * 299.99442 * 12 9 8 35 35 H 1.08992 * 109.47536 * 60.00002 * 12 9 8 36 36 H 1.09005 * 109.46447 * 60.00581 * 14 13 12 37 37 H 1.08996 * 109.47244 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.47413 * 300.00589 * 14 13 12 39 39 H 1.08995 * 109.47288 * 59.99735 * 15 13 12 40 40 H 1.09006 * 109.47137 * 179.97438 * 15 13 12 41 41 H 1.08996 * 109.47005 * 299.99969 * 15 13 12 42 42 H 0.96994 * 120.00409 * 180.02562 * 19 18 16 43 43 H 1.08990 * 115.54842 * 154.41683 * 24 3 2 44 44 H 1.09005 * 117.49645 * 0.02562 * 25 24 3 45 45 H 1.08998 * 117.50302 * 145.02196 * 25 24 3 46 46 H 1.08994 * 117.49966 * 214.97731 * 26 24 3 47 47 H 1.09001 * 117.49666 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3691 1.9886 0.5570 5 6 2.1528 1.8004 -1.4407 6 1 1.1852 1.7492 -1.9398 7 6 2.6484 3.2478 -1.4361 8 7 3.1153 0.9569 -2.1537 9 16 2.8701 0.5877 -3.7493 10 8 3.9708 -0.2442 -4.0897 11 8 1.5380 0.0950 -3.7942 12 6 2.9884 2.1822 -4.6062 13 6 2.7761 1.9717 -6.1066 14 6 3.8485 1.0226 -6.6453 15 6 1.3918 1.3656 -6.3459 16 6 2.8738 3.2964 -6.8185 17 1 3.0674 4.1983 -6.2568 18 6 2.7159 3.3571 -8.1869 19 7 2.4797 2.2590 -8.8709 20 14 2.8362 4.9992 -9.0691 21 1 3.1059 6.0738 -8.0803 22 1 3.9420 4.9494 -10.0591 23 1 1.5572 5.2798 -9.7693 24 6 3.3900 1.2494 0.6589 25 6 3.9621 -0.1320 0.9837 26 6 3.4605 0.7735 2.1114 27 1 -0.3634 0.5862 -0.8441 28 1 -0.3634 -1.0240 -0.0855 29 1 -0.3633 0.4380 0.9297 30 1 1.9323 3.8753 -0.9055 31 1 3.6161 3.2990 -0.9369 32 1 2.7504 3.6002 -2.4624 33 1 3.8984 0.6180 -1.6923 34 1 2.2241 2.8583 -4.2228 35 1 3.9743 2.6142 -4.4354 36 1 3.7774 0.0645 -6.1303 37 1 3.6970 0.8723 -7.7141 38 1 4.8347 1.4544 -6.4748 39 1 0.6279 2.0418 -5.9623 40 1 1.2405 1.2161 -7.4150 41 1 1.3208 0.4076 -5.8310 42 1 2.3690 2.3015 -9.8335 43 1 4.0909 2.0241 0.3485 44 1 3.3557 -1.0008 0.7276 45 1 5.0396 -0.2659 0.8875 46 1 4.2081 1.2350 2.7564 47 1 2.5238 0.5009 2.5976 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451972871.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:55 Heat of formation + Delta-G solvation = -98.148443 kcal Electronic energy + Delta-G solvation = -27178.247909 eV Core-core repulsion = 23489.371531 eV Total energy + Delta-G solvation = -3688.876378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.54043 -36.47120 -36.25440 -36.16321 -35.48383 -35.19084 -31.67211 -30.18820 -27.75637 -26.62872 -25.69959 -25.59132 -25.21798 -22.63845 -22.47981 -20.17854 -19.54126 -18.66809 -17.48572 -16.95149 -16.22180 -15.99239 -15.63240 -15.29547 -15.20234 -14.72510 -14.69529 -14.28982 -13.41451 -13.40191 -13.25946 -12.97800 -12.92652 -12.55059 -12.28604 -12.06204 -12.00509 -11.63460 -11.50753 -11.36690 -11.33666 -11.18107 -11.07035 -10.98837 -10.86887 -10.67460 -10.51101 -10.33434 -10.25533 -10.22609 -10.09019 -9.73222 -9.63739 -9.55203 -9.08872 -8.63997 -8.39981 -6.02935 -4.14871 0.95215 3.24134 3.24640 3.33143 3.35425 3.52477 3.80704 4.33628 4.41311 4.45032 4.53812 4.78185 4.86280 4.92229 5.10554 5.12009 5.18482 5.22310 5.27384 5.33191 5.42996 5.47615 5.52322 5.63282 5.69028 5.75162 5.77253 5.82883 5.96590 6.09491 6.17325 6.22284 6.42208 6.71935 6.81577 6.93340 7.04474 7.07704 7.30340 7.33580 7.52137 7.68416 7.99287 8.10860 8.33955 8.83826 9.50519 10.98378 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.003750 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.525800 B = 7464.256843 C = 7673.486699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.117 3.883 4 H 0.074 0.926 5 C 0.127 3.873 6 H 0.093 0.907 7 C -0.181 4.181 8 N -1.113 6.113 9 S 2.595 3.405 10 O -0.967 6.967 11 O -0.964 6.964 12 C -0.585 4.585 13 C 0.082 3.918 14 C -0.163 4.163 15 C -0.163 4.163 16 C -0.501 4.501 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.883 5.883 20 Si 0.895 3.105 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.161 4.161 25 C -0.166 4.166 26 C -0.175 4.175 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.412 0.588 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.027 0.973 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.261 0.739 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 0.051 19.719 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.290 6.290 3 C 0.057 3.943 4 H 0.091 0.909 5 C 0.019 3.981 6 H 0.111 0.889 7 C -0.240 4.240 8 N -0.870 5.870 9 S 2.692 3.308 10 O -0.957 6.957 11 O -0.954 6.954 12 C -0.719 4.719 13 C 0.080 3.920 14 C -0.221 4.221 15 C -0.221 4.221 16 C -0.540 4.540 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.521 5.521 20 Si 0.723 3.277 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.179 4.179 25 C -0.202 4.202 26 C -0.212 4.212 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.246 0.754 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.046 0.954 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.137 0.863 44 H 0.126 0.874 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.940 -1.018 19.132 19.182 hybrid contribution 0.305 1.802 -0.316 1.855 sum -0.635 0.784 18.816 18.843 Atomic orbital electron populations 1.22821 0.81090 1.03176 0.99767 1.87946 1.19505 1.26753 1.94807 1.21775 0.93384 0.85300 0.93810 0.90855 1.21211 0.93019 0.89930 0.93970 0.88875 1.22496 1.02296 0.95352 1.03847 1.55708 1.34985 1.66405 1.29885 1.05548 0.74441 0.78208 0.72580 1.93545 1.54650 1.65467 1.82066 1.93529 1.38276 1.78419 1.85156 1.30641 1.09661 1.19418 1.12135 1.17923 0.93238 0.96993 0.83891 1.22268 0.97969 0.96373 1.05512 1.22265 0.97117 0.97401 1.05285 1.20981 1.49219 0.91934 0.91857 0.92301 1.24943 0.94854 0.96511 0.97464 1.69811 1.48524 1.26527 1.07284 0.86493 0.77685 0.83863 0.79671 1.19868 1.20968 1.20973 1.22419 0.97406 0.99939 0.98155 1.22921 1.00715 0.94562 1.02050 1.22906 1.03063 1.04432 0.90785 0.93384 0.89574 0.94404 0.91338 0.91459 0.90903 0.75413 0.86547 0.86338 0.95384 0.88684 0.94503 0.94590 0.88708 0.95300 0.92820 0.86274 0.87428 0.88974 0.89005 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.79 101.05 1.09 1.38 16 2 O -0.37 -4.53 8.66 -35.23 -0.31 -4.84 16 3 C 0.12 1.21 2.31 -26.73 -0.06 1.15 16 4 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 5 C 0.13 1.51 2.70 -67.93 -0.18 1.33 16 6 H 0.09 1.19 6.85 -51.93 -0.36 0.84 16 7 C -0.18 -1.77 9.33 37.16 0.35 -1.42 16 8 N -1.11 -15.74 5.26 -4.89 -0.03 -15.76 16 9 S 2.59 49.12 4.46 -107.50 -0.48 48.64 16 10 O -0.97 -20.98 15.70 -57.54 -0.90 -21.88 16 11 O -0.96 -20.57 15.03 -57.54 -0.86 -21.44 16 12 C -0.59 -11.37 4.21 37.16 0.16 -11.21 16 13 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 14 C -0.16 -4.08 7.78 37.16 0.29 -3.79 16 15 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 16 C -0.50 -13.09 8.01 -34.44 -0.28 -13.36 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 19 N -0.88 -24.16 9.35 55.43 0.52 -23.64 16 20 Si 0.89 20.58 29.54 -169.99 -5.02 15.55 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.16 -1.49 4.34 -90.61 -0.39 -1.88 16 25 C -0.17 -1.60 9.62 -26.69 -0.26 -1.86 16 26 C -0.17 -1.45 10.19 -26.69 -0.27 -1.72 16 27 H 0.05 0.51 7.49 -51.93 -0.39 0.12 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.57 6.42 -51.93 -0.33 0.23 16 32 H 0.07 0.79 6.00 -51.93 -0.31 0.48 16 33 H 0.41 5.28 7.44 -34.47 -0.26 5.02 16 34 H 0.12 2.02 6.94 -51.92 -0.36 1.66 16 35 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 36 H 0.03 0.67 5.47 -51.93 -0.28 0.38 16 37 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 41 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 42 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.12 0.98 6.40 -51.93 -0.33 0.65 16 44 H 0.11 1.22 7.07 -51.93 -0.37 0.85 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -32.10 366.91 -8.65 -40.75 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.66 Total: 8.70 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 0.56 Total: -31.62 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.49 Total: -39.40 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -2.07 Total: -48.15 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 49.12 SS G_CDS: -0.48 Total: 48.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.10 -8.65 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451972871.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.395 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds