Wall clock time and date at job start Tue Mar 31 2020 12:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00120 * 2 1 4 4 H 1.08998 * 109.47055 * 32.82406 * 3 2 1 5 5 C 1.52996 * 109.47639 * 272.82310 * 3 2 1 6 6 H 1.08996 * 109.46897 * 54.58200 * 5 3 2 7 7 C 1.52997 * 109.47463 * 174.58554 * 5 3 2 8 8 N 1.46504 * 109.46911 * 294.58839 * 5 3 2 9 9 S 1.65601 * 119.99967 * 143.30923 * 8 5 3 10 10 O 1.42109 * 104.27555 * 180.79410 * 9 8 5 11 11 O 1.42102 * 104.27469 * 308.64640 * 9 8 5 12 12 C 1.81395 * 104.45017 * 64.72258 * 9 8 5 13 13 C 1.52997 * 109.46750 * 180.02562 * 12 9 8 14 14 C 1.53000 * 109.47326 * 299.99433 * 13 12 9 15 15 C 1.52998 * 109.47495 * 60.00034 * 13 12 9 16 16 C 1.50700 * 109.47023 * 179.97438 * 13 12 9 17 17 H 1.08002 * 120.00318 * 359.97438 * 16 13 12 18 18 C 1.37880 * 120.00178 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00231 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00081 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47165 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47103 * 119.99881 * 20 18 16 23 23 H 1.48494 * 109.47076 * 240.00296 * 20 18 16 24 24 C 1.53006 * 109.47024 * 152.82207 * 3 2 1 25 25 C 1.53000 * 117.49874 * 8.74800 * 24 3 2 26 26 C 1.53005 * 117.49911 * 300.08848 * 24 3 2 27 27 H 1.09004 * 109.47394 * 55.22263 * 1 2 3 28 28 H 1.08993 * 109.47597 * 175.22439 * 1 2 3 29 29 H 1.09003 * 109.46923 * 295.22860 * 1 2 3 30 30 H 1.08995 * 109.47047 * 300.00266 * 7 5 3 31 31 H 1.09005 * 109.47124 * 59.99981 * 7 5 3 32 32 H 1.08996 * 109.47233 * 179.97438 * 7 5 3 33 33 H 0.97003 * 119.99761 * 323.02719 * 8 5 3 34 34 H 1.09002 * 109.47179 * 299.99442 * 12 9 8 35 35 H 1.08992 * 109.47536 * 60.00002 * 12 9 8 36 36 H 1.09005 * 109.46447 * 60.00581 * 14 13 12 37 37 H 1.08996 * 109.47244 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.47413 * 300.00589 * 14 13 12 39 39 H 1.08995 * 109.47288 * 59.99735 * 15 13 12 40 40 H 1.09006 * 109.47137 * 179.97438 * 15 13 12 41 41 H 1.08996 * 109.47005 * 299.99969 * 15 13 12 42 42 H 0.96994 * 120.00409 * 180.02562 * 19 18 16 43 43 H 1.08990 * 115.54842 * 154.41683 * 24 3 2 44 44 H 1.09005 * 117.49645 * 0.02562 * 25 24 3 45 45 H 1.08998 * 117.50302 * 145.02196 * 25 24 3 46 46 H 1.08994 * 117.49966 * 214.97731 * 26 24 3 47 47 H 1.09001 * 117.49666 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3691 1.9886 0.5570 5 6 2.1528 1.8004 -1.4407 6 1 1.1852 1.7492 -1.9398 7 6 2.6484 3.2478 -1.4361 8 7 3.1153 0.9569 -2.1537 9 16 2.8701 0.5877 -3.7493 10 8 3.9708 -0.2442 -4.0897 11 8 1.5380 0.0950 -3.7942 12 6 2.9884 2.1822 -4.6062 13 6 2.7761 1.9717 -6.1066 14 6 3.8485 1.0226 -6.6453 15 6 1.3918 1.3656 -6.3459 16 6 2.8738 3.2964 -6.8185 17 1 3.0674 4.1983 -6.2568 18 6 2.7159 3.3571 -8.1869 19 7 2.4797 2.2590 -8.8709 20 14 2.8362 4.9992 -9.0691 21 1 3.1059 6.0738 -8.0803 22 1 3.9420 4.9494 -10.0591 23 1 1.5572 5.2798 -9.7693 24 6 3.3900 1.2494 0.6589 25 6 3.9621 -0.1320 0.9837 26 6 3.4605 0.7735 2.1114 27 1 -0.3634 0.5862 -0.8441 28 1 -0.3634 -1.0240 -0.0855 29 1 -0.3633 0.4380 0.9297 30 1 1.9323 3.8753 -0.9055 31 1 3.6161 3.2990 -0.9369 32 1 2.7504 3.6002 -2.4624 33 1 3.8984 0.6180 -1.6923 34 1 2.2241 2.8583 -4.2228 35 1 3.9743 2.6142 -4.4354 36 1 3.7774 0.0645 -6.1303 37 1 3.6970 0.8723 -7.7141 38 1 4.8347 1.4544 -6.4748 39 1 0.6279 2.0418 -5.9623 40 1 1.2405 1.2161 -7.4150 41 1 1.3208 0.4076 -5.8310 42 1 2.3690 2.3015 -9.8335 43 1 4.0909 2.0241 0.3485 44 1 3.3557 -1.0008 0.7276 45 1 5.0396 -0.2659 0.8875 46 1 4.2081 1.2350 2.7564 47 1 2.5238 0.5009 2.5976 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451972871.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:54 Heat of formation + Delta-G solvation = -119.774325 kcal Electronic energy + Delta-G solvation = -27179.185677 eV Core-core repulsion = 23489.371531 eV Total energy + Delta-G solvation = -3689.814146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.35510 -38.12643 -38.06866 -36.93432 -36.84940 -36.43207 -33.63536 -31.20392 -28.69576 -28.12381 -27.69551 -27.24067 -26.40722 -23.48336 -23.14941 -21.40326 -21.01712 -20.06420 -18.89550 -17.98940 -17.82730 -17.08155 -16.82811 -16.77431 -16.62650 -16.17678 -15.79570 -15.18267 -15.02035 -14.69360 -14.44861 -14.25571 -14.11835 -13.96371 -13.79274 -13.46565 -13.08158 -13.00341 -12.89762 -12.77548 -12.73658 -12.53388 -12.48216 -12.33139 -12.18095 -12.11849 -12.10184 -11.86953 -11.85545 -11.56452 -11.36345 -11.20143 -10.93504 -10.73321 -10.54027 -10.41733 -10.07244 -8.02179 -6.20823 -0.56131 1.43682 1.46688 1.56193 1.94787 2.44899 2.74481 2.90971 3.08658 3.20302 3.36694 3.68399 3.72117 3.99510 4.09709 4.16702 4.24007 4.27501 4.35789 4.41804 4.51661 4.58416 4.59571 4.67667 4.71294 4.83950 4.87069 4.90643 4.91940 4.93431 5.01579 5.08416 5.13075 5.25823 5.30351 5.37725 5.42113 5.48391 5.50646 5.65486 5.96649 6.11413 6.15624 6.34445 6.36460 6.84361 7.47578 8.97995 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.003750 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.525800 B = 7464.256843 C = 7673.486699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.394 6.394 3 C 0.115 3.885 4 H 0.098 0.902 5 C 0.117 3.883 6 H 0.081 0.919 7 C -0.181 4.181 8 N -1.098 6.098 9 S 2.610 3.390 10 O -0.999 6.999 11 O -0.992 6.992 12 C -0.584 4.584 13 C 0.069 3.931 14 C -0.160 4.160 15 C -0.158 4.158 16 C -0.514 4.514 17 H 0.065 0.935 18 C 0.016 3.984 19 N -0.909 5.909 20 Si 0.955 3.045 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.163 4.163 25 C -0.183 4.183 26 C -0.159 4.159 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.420 0.580 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.030 0.970 42 H 0.260 0.740 43 H 0.134 0.866 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.333 2.111 21.921 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.313 6.313 3 C 0.056 3.944 4 H 0.116 0.884 5 C 0.010 3.990 6 H 0.099 0.901 7 C -0.239 4.239 8 N -0.859 5.859 9 S 2.707 3.293 10 O -0.989 6.989 11 O -0.982 6.982 12 C -0.716 4.716 13 C 0.067 3.933 14 C -0.218 4.218 15 C -0.216 4.216 16 C -0.553 4.553 17 H 0.084 0.916 18 C -0.183 4.183 19 N -0.548 5.548 20 Si 0.781 3.219 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.181 4.181 25 C -0.220 4.220 26 C -0.196 4.196 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.256 0.744 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.152 0.848 44 H 0.104 0.896 45 H 0.118 0.882 46 H 0.127 0.873 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.595 1.045 21.342 21.376 hybrid contribution 0.168 1.121 -0.933 1.468 sum -0.427 2.166 20.409 20.528 Atomic orbital electron populations 1.22936 0.80436 1.03319 1.00742 1.87933 1.20446 1.28067 1.94876 1.21924 0.94479 0.85088 0.92947 0.88389 1.21531 0.91936 0.91003 0.94568 0.90074 1.22508 1.03885 0.93722 1.03801 1.55269 1.35851 1.66835 1.27915 1.04783 0.73254 0.77678 0.73560 1.93493 1.55479 1.66621 1.83309 1.93490 1.39648 1.78997 1.86037 1.30547 1.11635 1.20494 1.08967 1.17923 0.92316 0.96072 0.86975 1.22208 0.98622 0.96928 1.04038 1.22190 0.98016 0.97783 1.03631 1.21320 1.48830 0.92840 0.92279 0.91645 1.25695 0.94768 0.99434 0.98392 1.69956 1.49231 1.28291 1.07337 0.85551 0.77317 0.80460 0.78557 1.18751 1.21117 1.21023 1.22508 0.96959 0.99756 0.98899 1.22901 1.00880 0.94302 1.03878 1.22951 1.03275 1.03003 0.90366 0.94189 0.89730 0.91871 0.88942 0.89802 0.91977 0.74363 0.84390 0.84398 0.95244 0.91073 0.94092 0.94022 0.91159 0.95128 0.92995 0.84846 0.89585 0.88240 0.87278 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.79 113.37 1.22 1.64 16 2 O -0.39 -9.13 8.66 -148.98 -1.29 -10.42 16 3 C 0.11 2.09 2.31 30.59 0.07 2.16 16 4 H 0.10 1.32 7.86 -2.39 -0.02 1.30 16 5 C 0.12 2.53 2.70 44.99 0.12 2.65 16 6 H 0.08 1.96 6.85 -2.39 -0.02 1.95 16 7 C -0.18 -2.91 9.33 71.98 0.67 -2.24 16 8 N -1.10 -29.44 5.26 -169.39 -0.89 -30.33 16 9 S 2.61 97.46 4.46 -56.49 -0.25 97.20 16 10 O -1.00 -43.33 15.70 -127.65 -2.00 -45.33 16 11 O -0.99 -42.45 15.03 -127.65 -1.92 -44.36 16 12 C -0.58 -21.90 4.21 71.98 0.30 -21.60 16 13 C 0.07 3.34 0.52 -52.93 -0.03 3.31 16 14 C -0.16 -8.09 7.78 71.98 0.56 -7.53 16 15 C -0.16 -7.92 7.77 71.98 0.56 -7.36 16 16 C -0.51 -26.47 8.01 25.60 0.21 -26.26 16 17 H 0.07 3.21 7.74 -2.91 -0.02 3.19 16 18 C 0.02 0.86 5.15 84.66 0.44 1.30 16 19 N -0.91 -50.51 9.35 21.45 0.20 -50.31 16 20 Si 0.95 41.84 29.54 68.60 2.03 43.87 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 C -0.16 -2.56 4.34 -10.79 -0.05 -2.60 16 25 C -0.18 -3.25 9.62 30.62 0.29 -2.96 16 26 C -0.16 -2.19 10.19 30.62 0.31 -1.88 16 27 H 0.04 0.81 7.49 -2.39 -0.02 0.79 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.08 6.42 -2.38 -0.02 1.06 16 32 H 0.06 1.15 6.00 -2.39 -0.01 1.14 16 33 H 0.42 10.12 7.44 -96.74 -0.72 9.40 16 34 H 0.14 4.52 6.94 -2.39 -0.02 4.50 16 35 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 36 H 0.03 1.43 5.47 -2.38 -0.01 1.42 16 37 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 38 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 3.85 6.07 -2.38 -0.01 3.83 16 41 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 42 H 0.26 13.85 8.31 -92.71 -0.77 13.07 16 43 H 0.13 1.70 6.40 -2.39 -0.02 1.68 16 44 H 0.09 1.92 7.07 -2.38 -0.02 1.90 16 45 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -69.10 366.91 0.80 -68.30 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.25 Total: 32.76 kcal Atomic # 6 Polarization: -66.06 SS G_CDS: 4.68 Total: -61.37 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -0.69 Total: -80.64 kcal Atomic # 8 Polarization: -94.90 SS G_CDS: -5.21 Total: -100.11 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 97.46 SS G_CDS: -0.25 Total: 97.20 kcal Total: -69.10 0.80 -68.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451972871.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.476 kcal (2) G-P(sol) polarization free energy of solvation -69.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds