Wall clock time and date at job start Tue Mar 31 2020 12:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99963 * 2 1 4 4 C 1.52998 * 109.47159 * 179.97438 * 3 2 1 5 5 O 1.42910 * 109.47061 * 65.00334 * 4 3 2 6 6 C 1.35907 * 117.00108 * 179.97438 * 5 4 3 7 7 C 1.38901 * 119.96977 * 0.02562 * 6 5 4 8 8 C 1.38289 * 120.28934 * 180.02562 * 7 6 5 9 9 C 1.37941 * 120.23159 * 359.95373 * 8 7 6 10 10 C 1.39830 * 119.93853 * 0.02562 * 9 8 7 11 11 C 1.47216 * 120.14652 * 180.02562 * 10 9 8 12 12 C 1.34809 * 119.99846 * 222.56196 * 11 10 9 13 13 C 1.46430 * 120.00063 * 11.27406 * 12 11 10 14 14 O 1.21694 * 120.00135 * 7.09927 * 13 12 11 15 15 N 1.34775 * 119.99828 * 187.09214 * 13 12 11 16 16 C 1.46500 * 120.00158 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.46905 * 325.00845 * 16 15 13 18 18 C 1.53001 * 109.46952 * 85.00080 * 16 15 13 19 19 C 1.50700 * 109.47604 * 205.00215 * 16 15 13 20 20 H 1.08002 * 119.99325 * 359.97438 * 19 16 15 21 21 C 1.37868 * 119.99921 * 180.02562 * 19 16 15 22 22 N 1.31514 * 120.00293 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99812 * 179.97438 * 21 19 16 24 24 H 1.48505 * 109.47232 * 89.99671 * 23 21 19 25 25 H 1.48504 * 109.47448 * 209.99905 * 23 21 19 26 26 H 1.48503 * 109.47030 * 329.99847 * 23 21 19 27 27 C 1.38384 * 119.97094 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.46861 * 60.00481 * 1 2 3 29 29 H 1.09001 * 109.46718 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46933 * 300.00195 * 1 2 3 31 31 H 1.09001 * 109.46985 * 59.99995 * 3 2 1 32 32 H 1.09003 * 109.47315 * 300.00119 * 3 2 1 33 33 H 1.08994 * 109.47369 * 305.00296 * 4 3 2 34 34 H 1.09002 * 109.47538 * 184.99697 * 4 3 2 35 35 H 1.08000 * 119.86018 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.88526 * 179.97438 * 8 7 6 37 37 H 1.07999 * 120.03138 * 180.29780 * 9 8 7 38 38 H 1.08000 * 119.99885 * 42.54750 * 11 10 9 39 39 H 1.08001 * 119.99701 * 191.28714 * 12 11 10 40 40 H 0.96998 * 120.00403 * 0.02562 * 15 13 12 41 41 H 1.09001 * 109.47140 * 60.00445 * 18 16 15 42 42 H 1.09002 * 109.47197 * 180.02562 * 18 16 15 43 43 H 1.09005 * 109.47362 * 300.00475 * 18 16 15 44 44 H 0.97001 * 119.99960 * 180.02562 * 22 21 19 45 45 H 1.07998 * 120.11294 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9659 0.5793 -1.2202 6 6 5.3032 0.3983 -1.3813 7 6 6.1825 0.7959 -0.3823 8 6 7.5445 0.6154 -0.5395 9 6 8.0404 0.0380 -1.6899 10 6 7.1638 -0.3662 -2.7016 11 6 7.6880 -0.9835 -3.9309 12 6 7.1834 -0.6309 -5.1303 13 6 6.2986 0.5307 -5.2394 14 8 6.1213 1.2532 -4.2764 15 7 5.6807 0.7998 -6.4066 16 6 4.7959 1.9623 -6.5161 17 1 4.2712 2.1096 -5.5721 18 6 5.6262 3.2066 -6.8375 19 6 3.7937 1.7290 -7.6170 20 1 3.8141 0.8071 -8.1793 21 6 2.8515 2.6928 -7.9071 22 7 2.8271 3.8156 -7.2227 23 14 1.6097 2.4039 -9.2723 24 1 0.4020 1.7460 -8.7119 25 1 1.2284 3.7049 -9.8782 26 1 2.2113 1.5309 -10.3122 27 6 5.7875 -0.1828 -2.5400 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5685 0.8426 34 1 3.9785 2.1765 0.0902 35 1 5.8009 1.2480 0.5213 36 1 8.2223 0.9274 0.2413 37 1 9.1043 -0.1058 -1.8072 38 1 8.4770 -1.7187 -3.8720 39 1 7.4316 -1.2053 -6.0105 40 1 5.8218 0.2238 -7.1742 41 1 6.1510 3.0594 -7.7814 42 1 4.9679 4.0717 -6.9185 43 1 6.3512 3.3754 -6.0411 44 1 2.1639 4.4935 -7.4266 45 1 5.1046 -0.4935 -3.3169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491956445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:56 Heat of formation + Delta-G solvation = -67.155413 kcal Electronic energy + Delta-G solvation = -26723.683251 eV Core-core repulsion = 22900.706881 eV Total energy + Delta-G solvation = -3822.976370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.98053 -38.94296 -37.92490 -36.91250 -34.83768 -33.19681 -32.32820 -31.16383 -29.75547 -29.09990 -28.41080 -26.40642 -25.22255 -24.14861 -22.94065 -22.13199 -21.24694 -19.93131 -19.06127 -18.02242 -16.85153 -16.54594 -16.25363 -15.93941 -15.65205 -15.45678 -15.10869 -15.02944 -14.68215 -14.29080 -14.06829 -13.71456 -13.29905 -13.04787 -12.82376 -12.66755 -12.40924 -12.28995 -12.06286 -11.67593 -11.63777 -11.40122 -11.26045 -11.04166 -10.95454 -10.84593 -10.69175 -10.54321 -10.26338 -10.19934 -9.78145 -9.63192 -9.05564 -8.99767 -8.50713 -7.96559 -7.82385 -7.55703 -6.08772 -4.17642 1.03384 1.87462 2.21434 3.26464 3.32795 3.34875 3.40409 3.65038 4.07824 4.16930 4.23352 4.46685 4.81774 4.93694 5.03058 5.09461 5.18937 5.20403 5.23507 5.27767 5.30785 5.39560 5.40483 5.51211 5.57725 5.60541 5.68497 5.84016 5.87545 6.26078 6.40209 6.45544 6.64870 6.71533 6.87699 6.89905 7.01864 7.02335 7.10584 7.20791 7.53552 7.63030 7.75302 7.77152 7.97468 8.19591 8.74817 8.83971 9.23009 9.50221 10.97178 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008526 B = 0.004390 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3283.202668 B = 6377.229376 C = 8864.253651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.061 3.939 4 C 0.064 3.936 5 O -0.304 6.304 6 C 0.118 3.882 7 C -0.203 4.203 8 C -0.100 4.100 9 C -0.141 4.141 10 C -0.027 4.027 11 C -0.050 4.050 12 C -0.191 4.191 13 C 0.519 3.481 14 O -0.538 6.538 15 N -0.702 5.702 16 C 0.265 3.735 17 H 0.049 0.951 18 C -0.145 4.145 19 C -0.532 4.532 20 H 0.060 0.940 21 C 0.066 3.934 22 N -0.884 5.884 23 Si 0.900 3.100 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.056 4.056 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.388 0.612 41 H 0.025 0.975 42 H 0.089 0.911 43 H 0.014 0.986 44 H 0.263 0.737 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 -7.951 13.744 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.011 4.011 5 O -0.218 6.218 6 C 0.073 3.927 7 C -0.221 4.221 8 C -0.119 4.119 9 C -0.159 4.159 10 C -0.027 4.027 11 C -0.070 4.070 12 C -0.212 4.212 13 C 0.305 3.695 14 O -0.418 6.418 15 N -0.349 5.349 16 C 0.163 3.837 17 H 0.067 0.933 18 C -0.204 4.204 19 C -0.570 4.570 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.521 5.521 23 Si 0.728 3.272 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.075 4.075 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.220 0.780 41 H 0.044 0.956 42 H 0.107 0.893 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.192 -7.423 14.272 16.624 hybrid contribution -0.715 0.126 -1.094 1.313 sum 3.477 -7.297 13.178 15.460 Atomic orbital electron populations 1.22751 0.80985 1.02828 1.00006 1.87950 1.19715 1.27257 1.95422 1.22594 0.91752 0.85682 1.01499 1.22742 0.93559 0.98117 0.86724 1.86176 1.20193 1.76906 1.38482 1.18738 0.82223 0.97146 0.94550 1.21162 0.94315 1.07053 0.99613 1.20613 0.94316 0.99380 0.97548 1.20985 0.98745 1.02317 0.93845 1.18550 0.92223 0.98503 0.93435 1.22209 0.96454 0.97063 0.91251 1.23318 1.01117 0.98376 0.98430 1.18409 0.81139 0.85953 0.83963 1.90854 1.63441 1.51007 1.36534 1.46533 1.46151 1.30464 1.11728 1.18716 0.86579 0.80422 0.97992 0.93303 1.22060 0.98906 1.02353 0.97078 1.21230 1.14614 1.03174 1.18026 0.92135 1.24877 0.97394 0.94875 0.96536 1.69912 1.35067 1.07006 1.40163 0.86468 0.81388 0.77571 0.81775 1.20581 1.21113 1.19845 1.20348 0.94393 0.98521 0.94232 0.93678 0.89616 0.94288 0.91376 0.91607 0.91574 0.90641 0.86286 0.86410 0.86399 0.84999 0.85370 0.78020 0.95598 0.89273 0.96682 0.92676 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.37 10.67 -40.08 -0.43 -5.79 16 3 C 0.06 0.75 6.32 37.16 0.23 0.99 16 4 C 0.06 0.85 5.12 37.16 0.19 1.04 16 5 O -0.30 -5.52 10.10 -24.29 -0.25 -5.77 16 6 C 0.12 2.13 6.68 -39.28 -0.26 1.86 16 7 C -0.20 -3.05 9.04 -39.32 -0.36 -3.40 16 8 C -0.10 -1.39 10.02 -39.67 -0.40 -1.79 16 9 C -0.14 -2.02 9.79 -39.09 -0.38 -2.40 16 10 C -0.03 -0.44 4.57 -105.08 -0.48 -0.92 16 11 C -0.05 -0.69 9.81 -37.15 -0.36 -1.06 16 12 C -0.19 -2.90 9.91 -37.50 -0.37 -3.27 16 13 C 0.52 10.60 6.70 -12.96 -0.09 10.51 16 14 O -0.54 -12.81 11.79 5.19 0.06 -12.75 16 15 N -0.70 -15.02 5.06 -56.33 -0.29 -15.30 16 16 C 0.26 6.90 2.56 -69.08 -0.18 6.72 16 17 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 18 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 19 C -0.53 -14.36 8.73 -34.44 -0.30 -14.66 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 21 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 22 N -0.88 -25.29 11.32 55.43 0.63 -24.66 16 23 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C -0.06 -1.05 6.52 -38.95 -0.25 -1.31 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.77 7.66 -51.93 -0.40 0.38 16 34 H 0.08 0.88 7.66 -51.93 -0.40 0.48 16 35 H 0.12 1.46 6.28 -52.49 -0.33 1.13 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.39 7.17 8.52 -40.82 -0.35 6.82 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.12 2.53 6.93 -52.49 -0.36 2.17 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -33.75 377.09 -7.99 -41.74 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.74 Total: 8.87 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.65 Total: -7.92 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.34 Total: -39.96 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.61 Total: -24.31 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.75 -7.99 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491956445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.412 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds