Wall clock time and date at job start Tue Mar 31 2020 12:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99963 * 2 1 4 4 C 1.52998 * 109.47159 * 179.97438 * 3 2 1 5 5 O 1.42910 * 109.47061 * 65.00334 * 4 3 2 6 6 C 1.35907 * 117.00108 * 179.97438 * 5 4 3 7 7 C 1.38901 * 119.96977 * 0.02562 * 6 5 4 8 8 C 1.38289 * 120.28934 * 180.02562 * 7 6 5 9 9 C 1.37941 * 120.23159 * 359.95373 * 8 7 6 10 10 C 1.39830 * 119.93853 * 0.02562 * 9 8 7 11 11 C 1.47216 * 120.14652 * 180.02562 * 10 9 8 12 12 C 1.34809 * 119.99846 * 222.56196 * 11 10 9 13 13 C 1.46430 * 120.00063 * 11.27406 * 12 11 10 14 14 O 1.21694 * 120.00135 * 7.09927 * 13 12 11 15 15 N 1.34775 * 119.99828 * 187.09214 * 13 12 11 16 16 C 1.46500 * 120.00158 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.46905 * 325.00845 * 16 15 13 18 18 C 1.53001 * 109.46952 * 85.00080 * 16 15 13 19 19 C 1.50700 * 109.47604 * 205.00215 * 16 15 13 20 20 H 1.08002 * 119.99325 * 359.97438 * 19 16 15 21 21 C 1.37868 * 119.99921 * 180.02562 * 19 16 15 22 22 N 1.31514 * 120.00293 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99812 * 179.97438 * 21 19 16 24 24 H 1.48505 * 109.47232 * 89.99671 * 23 21 19 25 25 H 1.48504 * 109.47448 * 209.99905 * 23 21 19 26 26 H 1.48503 * 109.47030 * 329.99847 * 23 21 19 27 27 C 1.38384 * 119.97094 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.46861 * 60.00481 * 1 2 3 29 29 H 1.09001 * 109.46718 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46933 * 300.00195 * 1 2 3 31 31 H 1.09001 * 109.46985 * 59.99995 * 3 2 1 32 32 H 1.09003 * 109.47315 * 300.00119 * 3 2 1 33 33 H 1.08994 * 109.47369 * 305.00296 * 4 3 2 34 34 H 1.09002 * 109.47538 * 184.99697 * 4 3 2 35 35 H 1.08000 * 119.86018 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.88526 * 179.97438 * 8 7 6 37 37 H 1.07999 * 120.03138 * 180.29780 * 9 8 7 38 38 H 1.08000 * 119.99885 * 42.54750 * 11 10 9 39 39 H 1.08001 * 119.99701 * 191.28714 * 12 11 10 40 40 H 0.96998 * 120.00403 * 0.02562 * 15 13 12 41 41 H 1.09001 * 109.47140 * 60.00445 * 18 16 15 42 42 H 1.09002 * 109.47197 * 180.02562 * 18 16 15 43 43 H 1.09005 * 109.47362 * 300.00475 * 18 16 15 44 44 H 0.97001 * 119.99960 * 180.02562 * 22 21 19 45 45 H 1.07998 * 120.11294 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9659 0.5793 -1.2202 6 6 5.3032 0.3983 -1.3813 7 6 6.1825 0.7959 -0.3823 8 6 7.5445 0.6154 -0.5395 9 6 8.0404 0.0380 -1.6899 10 6 7.1638 -0.3662 -2.7016 11 6 7.6880 -0.9835 -3.9309 12 6 7.1834 -0.6309 -5.1303 13 6 6.2986 0.5307 -5.2394 14 8 6.1213 1.2532 -4.2764 15 7 5.6807 0.7998 -6.4066 16 6 4.7959 1.9623 -6.5161 17 1 4.2712 2.1096 -5.5721 18 6 5.6262 3.2066 -6.8375 19 6 3.7937 1.7290 -7.6170 20 1 3.8141 0.8071 -8.1793 21 6 2.8515 2.6928 -7.9071 22 7 2.8271 3.8156 -7.2227 23 14 1.6097 2.4039 -9.2723 24 1 0.4020 1.7460 -8.7119 25 1 1.2284 3.7049 -9.8782 26 1 2.2113 1.5309 -10.3122 27 6 5.7875 -0.1828 -2.5400 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5685 0.8426 34 1 3.9785 2.1765 0.0902 35 1 5.8009 1.2480 0.5213 36 1 8.2223 0.9274 0.2413 37 1 9.1043 -0.1058 -1.8072 38 1 8.4770 -1.7187 -3.8720 39 1 7.4316 -1.2053 -6.0105 40 1 5.8218 0.2238 -7.1742 41 1 6.1510 3.0594 -7.7814 42 1 4.9679 4.0717 -6.9185 43 1 6.3512 3.3754 -6.0411 44 1 2.1639 4.4935 -7.4266 45 1 5.1046 -0.4935 -3.3169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491956445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:55 Heat of formation + Delta-G solvation = -90.186974 kcal Electronic energy + Delta-G solvation = -26724.681975 eV Core-core repulsion = 22900.706881 eV Total energy + Delta-G solvation = -3823.975094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25363 -40.42864 -39.02364 -38.12059 -36.69826 -34.47150 -34.29205 -32.24237 -31.34430 -30.31904 -29.93573 -27.36516 -27.29688 -25.44607 -24.16996 -23.44420 -22.62497 -21.63840 -20.55790 -19.40036 -18.23412 -17.85967 -17.56394 -17.32047 -17.03877 -16.82620 -16.50918 -16.18510 -15.95768 -15.81124 -15.51765 -15.05537 -14.70258 -14.48196 -14.39440 -13.99982 -13.72399 -13.63206 -13.47588 -13.17100 -12.93535 -12.88682 -12.75875 -12.63149 -12.47378 -12.31934 -12.28238 -12.13736 -11.93528 -11.67747 -11.12714 -10.85800 -10.74361 -10.65456 -10.53345 -9.68698 -9.05522 -8.95492 -8.18790 -6.36548 -0.17483 0.66562 1.01756 1.42133 1.43232 1.54001 2.29080 2.35785 2.57756 2.73215 2.79055 2.97887 3.11503 3.78792 3.86862 4.02643 4.03256 4.11180 4.20055 4.27736 4.30574 4.42387 4.47873 4.48333 4.52728 4.57544 4.69286 4.71635 4.76237 4.79189 4.90587 5.08513 5.10433 5.20668 5.29524 5.43733 5.47339 5.56865 5.62545 5.69552 5.72675 5.92629 5.99706 6.09906 6.11459 6.58094 6.72058 7.06309 7.31930 7.66065 8.87626 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008526 B = 0.004390 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3283.202668 B = 6377.229376 C = 8864.253651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.060 3.940 4 C 0.056 3.944 5 O -0.342 6.342 6 C 0.090 3.910 7 C -0.206 4.206 8 C -0.097 4.097 9 C -0.140 4.140 10 C -0.046 4.046 11 C -0.026 4.026 12 C -0.207 4.207 13 C 0.510 3.490 14 O -0.579 6.579 15 N -0.704 5.704 16 C 0.274 3.726 17 H -0.009 1.009 18 C -0.129 4.129 19 C -0.547 4.547 20 H 0.072 0.928 21 C 0.013 3.987 22 N -0.919 5.919 23 Si 0.973 3.027 24 H -0.279 1.279 25 H -0.282 1.282 26 H -0.258 1.258 27 C -0.090 4.090 28 H 0.037 0.963 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.187 0.813 39 H 0.170 0.830 40 H 0.403 0.597 41 H 0.040 0.960 42 H 0.064 0.936 43 H 0.009 0.991 44 H 0.265 0.735 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 -9.308 14.199 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.016 4.016 4 C -0.019 4.019 5 O -0.257 6.257 6 C 0.046 3.954 7 C -0.225 4.225 8 C -0.115 4.115 9 C -0.158 4.158 10 C -0.046 4.046 11 C -0.045 4.045 12 C -0.228 4.228 13 C 0.300 3.700 14 O -0.461 6.461 15 N -0.352 5.352 16 C 0.170 3.830 17 H 0.009 0.991 18 C -0.188 4.188 19 C -0.585 4.585 20 H 0.090 0.910 21 C -0.186 4.186 22 N -0.557 5.557 23 Si 0.797 3.203 24 H -0.205 1.205 25 H -0.207 1.207 26 H -0.182 1.182 27 C -0.109 4.109 28 H 0.056 0.944 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.162 0.838 36 H 0.175 0.825 37 H 0.173 0.827 38 H 0.204 0.796 39 H 0.187 0.813 40 H 0.238 0.762 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.028 0.972 44 H 0.074 0.926 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.062 -8.815 14.720 18.197 hybrid contribution -1.292 0.559 -1.059 1.761 sum 4.770 -8.256 13.661 16.659 Atomic orbital electron populations 1.22939 0.79354 1.03909 1.00893 1.87902 1.21675 1.28266 1.95628 1.22723 0.91201 0.85359 1.02321 1.23059 0.94294 0.98825 0.85680 1.86127 1.20899 1.77703 1.40993 1.19078 0.82691 0.98146 0.95511 1.21503 0.94774 1.06524 0.99655 1.21154 0.94238 0.97808 0.98322 1.21456 1.00231 1.01015 0.93103 1.18965 0.91458 0.98913 0.95281 1.22766 0.95906 0.96338 0.89490 1.23288 1.00961 0.97570 1.00947 1.19346 0.80892 0.87132 0.82659 1.90841 1.64785 1.52863 1.37625 1.46283 1.46071 1.29718 1.13148 1.18239 0.87220 0.82454 0.95038 0.99072 1.21855 0.98129 1.01347 0.97466 1.21562 1.15101 1.03690 1.18170 0.91002 1.25823 0.99357 0.94489 0.98979 1.70068 1.35897 1.07959 1.41772 0.85339 0.78485 0.77695 0.78779 1.20490 1.20712 1.18214 1.20312 0.95442 1.00981 0.94209 0.94431 0.88552 0.91693 0.87412 0.93718 0.89842 0.89336 0.83767 0.82505 0.82737 0.79646 0.81264 0.76211 0.94109 0.91691 0.97218 0.92604 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 11.01 113.37 1.25 1.76 16 2 O -0.42 -11.94 10.67 -144.35 -1.54 -13.48 16 3 C 0.06 1.52 6.32 71.98 0.45 1.98 16 4 C 0.06 1.53 5.12 71.98 0.37 1.90 16 5 O -0.34 -13.41 10.10 -87.87 -0.89 -14.30 16 6 C 0.09 3.41 6.68 22.46 0.15 3.56 16 7 C -0.21 -6.05 9.04 22.44 0.20 -5.85 16 8 C -0.10 -2.44 10.02 22.21 0.22 -2.21 16 9 C -0.14 -3.64 9.79 22.58 0.22 -3.42 16 10 C -0.05 -1.46 4.57 -20.16 -0.09 -1.56 16 11 C -0.03 -0.65 9.81 23.84 0.23 -0.41 16 12 C -0.21 -5.98 9.91 23.62 0.23 -5.75 16 13 C 0.51 21.49 6.70 86.38 0.58 22.07 16 14 O -0.58 -29.18 11.79 -4.33 -0.05 -29.23 16 15 N -0.70 -31.05 5.06 -450.34 -2.28 -33.33 16 16 C 0.27 15.02 2.56 44.25 0.11 15.13 16 17 H -0.01 -0.56 7.58 -2.39 -0.02 -0.58 16 18 C -0.13 -6.89 9.26 71.98 0.67 -6.22 16 19 C -0.55 -30.25 8.73 25.60 0.22 -30.03 16 20 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 21 C 0.01 0.74 5.30 84.65 0.45 1.19 16 22 N -0.92 -54.52 11.32 21.44 0.24 -54.28 16 23 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 27 C -0.09 -3.59 6.52 22.68 0.15 -3.45 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.93 7.66 -2.39 -0.02 1.91 16 34 H 0.09 2.10 7.66 -2.39 -0.02 2.08 16 35 H 0.14 3.32 6.28 -2.91 -0.02 3.30 16 36 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 37 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.19 2.65 8.06 -2.91 -0.02 2.62 16 39 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.40 14.93 8.52 -92.71 -0.79 14.14 16 41 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 42 H 0.06 3.77 6.07 -2.39 -0.01 3.75 16 43 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 45 H 0.08 3.88 6.93 -2.91 -0.02 3.86 16 Total: -1.00 -80.43 377.09 3.13 -77.29 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.20 Total: 33.32 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 5.42 Total: -11.29 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -2.04 Total: -87.61 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -2.48 Total: -57.01 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -80.43 3.13 -77.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491956445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.894 kcal (2) G-P(sol) polarization free energy of solvation -80.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds