Wall clock time and date at job start Tue Mar 31 2020 12:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47327 * 2 1 4 4 O 1.42902 * 109.47169 * 119.99694 * 2 1 3 5 5 C 1.53003 * 109.47330 * 239.99829 * 2 1 3 6 6 C 1.52996 * 109.47241 * 175.00180 * 5 2 1 7 7 N 1.46498 * 109.47158 * 180.02562 * 6 5 2 8 8 C 1.46500 * 119.99895 * 269.99832 * 7 6 5 9 9 C 1.34774 * 120.00020 * 89.99746 * 7 6 5 10 10 O 1.21722 * 120.00452 * 0.02562 * 9 7 6 11 11 C 1.46257 * 119.99841 * 179.97438 * 9 7 6 12 12 C 1.35022 * 119.99813 * 186.96360 * 11 9 7 13 13 C 1.46959 * 120.00490 * 10.97207 * 12 11 9 14 14 C 1.40020 * 120.10413 * 226.00721 * 13 12 11 15 15 C 1.37598 * 119.89706 * 179.78492 * 14 13 12 16 16 C 1.39176 * 120.10307 * 0.48868 * 15 14 13 17 17 O 1.35568 * 119.89975 * 179.76445 * 16 15 14 18 18 C 1.34783 * 117.00091 * 174.20401 * 17 16 15 19 19 H 1.08002 * 120.00049 * 5.06318 * 18 17 16 20 20 C 1.38717 * 120.00109 * 185.06988 * 18 17 16 21 21 N 1.31507 * 119.99782 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99934 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46979 * 60.00212 * 22 20 18 24 24 H 1.48501 * 109.46874 * 179.97438 * 22 20 18 25 25 H 1.48490 * 109.47135 * 299.99747 * 22 20 18 26 26 C 1.39178 * 120.20167 * 359.74163 * 16 15 14 27 27 C 1.37604 * 120.09890 * 0.02562 * 26 16 15 28 28 H 1.08994 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46898 * 299.99982 * 1 2 3 30 30 H 1.09003 * 109.46694 * 60.00271 * 1 2 3 31 31 H 0.96696 * 113.99882 * 60.00200 * 4 2 1 32 32 H 1.08994 * 109.47017 * 54.99765 * 5 2 1 33 33 H 1.09002 * 109.47145 * 294.99804 * 5 2 1 34 34 H 1.09002 * 109.47300 * 59.99577 * 6 5 2 35 35 H 1.09004 * 109.47258 * 299.99871 * 6 5 2 36 36 H 1.09005 * 109.47310 * 270.00143 * 8 7 6 37 37 H 1.08997 * 109.46979 * 29.99789 * 8 7 6 38 38 H 1.08997 * 109.47402 * 150.00245 * 8 7 6 39 39 H 1.08004 * 120.00214 * 7.24553 * 11 9 7 40 40 H 1.08010 * 119.99795 * 190.97354 * 12 11 9 41 41 H 1.08006 * 120.05216 * 359.97438 * 14 13 12 42 42 H 1.08006 * 119.94821 * 180.23075 * 15 14 13 43 43 H 0.97001 * 119.99743 * 180.02562 * 21 20 18 44 44 H 1.07997 * 119.94939 * 179.97438 * 26 16 15 45 45 H 1.07997 * 120.04431 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2492 6 6 3.5649 -0.6134 -1.3136 7 7 4.0532 -1.3035 -2.5101 8 6 4.4016 -2.7249 -2.4449 9 6 4.1819 -0.6307 -3.6708 10 8 3.8928 0.5505 -3.7249 11 6 4.6699 -1.3195 -4.8651 12 6 4.9327 -0.6185 -5.9887 13 6 4.9629 0.8502 -5.9485 14 6 4.3051 1.5935 -6.9361 15 6 4.3324 2.9685 -6.8917 16 6 5.0210 3.6206 -5.8731 17 8 5.0492 4.9754 -5.8361 18 6 5.6290 5.5463 -4.7615 19 1 6.1165 4.9306 -4.0201 20 6 5.5995 6.9246 -4.6078 21 7 5.0063 7.6743 -5.5109 22 14 6.4024 7.7157 -3.1183 23 1 7.8498 7.3838 -3.1014 24 1 6.2339 9.1894 -3.1894 25 1 5.7625 7.2030 -1.8803 26 6 5.6803 2.8859 -4.8919 27 6 5.6544 1.5105 -4.9255 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7211 -1.5951 1.2330 32 1 1.6054 -0.2619 -2.1369 33 1 1.7518 -1.7716 -1.2055 34 1 3.9995 -1.0728 -0.4258 35 1 3.8533 0.4369 -1.3573 36 1 5.4532 -2.8294 -2.1778 37 1 3.7850 -3.2159 -1.6919 38 1 4.2258 -3.1871 -3.4162 39 1 4.8158 -2.3896 -4.8496 40 1 5.1207 -1.1372 -6.9173 41 1 3.7745 1.0884 -7.7297 42 1 3.8222 3.5427 -7.6510 43 1 4.9860 8.6382 -5.4036 44 1 6.2138 3.3960 -4.1036 45 1 6.1660 0.9413 -4.1635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492090880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:27 Heat of formation + Delta-G solvation = -61.678831 kcal Electronic energy + Delta-G solvation = -26542.129690 eV Core-core repulsion = 22719.390802 eV Total energy + Delta-G solvation = -3822.738888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.94631 -38.80271 -38.03303 -36.60791 -35.33530 -33.18749 -32.38633 -32.01090 -30.06658 -29.68456 -28.00565 -26.66239 -25.37893 -24.44824 -22.45348 -21.75223 -21.52590 -20.37712 -18.29174 -17.96031 -17.42415 -16.77359 -16.59226 -16.01793 -15.89696 -15.15158 -14.63326 -14.43509 -14.37028 -13.98030 -13.69653 -13.52555 -13.42723 -13.27486 -13.03384 -12.95718 -12.70393 -12.57937 -12.45851 -12.17540 -12.06985 -11.94998 -11.65565 -11.25619 -11.02193 -10.98614 -10.91419 -10.74903 -10.55620 -10.41320 -10.34935 -9.43775 -9.34398 -9.14887 -8.67097 -8.59028 -7.89998 -6.86071 -6.43011 -3.98628 1.28165 2.43299 2.69963 3.10820 3.15844 3.18337 3.20025 3.62972 4.00072 4.14769 4.58995 4.69994 4.74356 4.79997 4.96264 4.98458 5.12128 5.14915 5.17569 5.25511 5.35476 5.39149 5.41735 5.51180 5.53931 5.61636 5.75763 5.77773 5.86119 5.87400 5.99126 6.06194 6.26484 6.31181 6.43329 6.57112 6.68122 6.80346 7.05686 7.14991 7.34844 7.39408 7.47799 7.53151 7.56795 7.94236 8.03804 8.53529 9.02851 9.74268 10.74849 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010014 B = 0.003660 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.500626 B = 7648.116185 C = 9513.430962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.102 3.898 3 H 0.103 0.897 4 O -0.564 6.564 5 C -0.164 4.164 6 C 0.121 3.879 7 N -0.625 5.625 8 C 0.082 3.918 9 C 0.539 3.461 10 O -0.508 6.508 11 C -0.266 4.266 12 C 0.025 3.975 13 C -0.185 4.185 14 C -0.047 4.047 15 C -0.207 4.207 16 C 0.170 3.830 17 O -0.173 6.173 18 C -0.389 4.389 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.241 4.241 27 C 0.010 3.990 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.370 0.630 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.271 0.729 44 H 0.124 0.876 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 -21.948 7.420 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.043 3.957 3 H 0.121 0.879 4 O -0.369 6.369 5 C -0.203 4.203 6 C -0.002 4.002 7 N -0.360 5.360 8 C -0.061 4.061 9 C 0.330 3.670 10 O -0.383 6.383 11 C -0.287 4.287 12 C 0.006 3.994 13 C -0.186 4.186 14 C -0.065 4.065 15 C -0.227 4.227 16 C 0.115 3.885 17 O -0.076 6.076 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.496 5.496 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.260 4.260 27 C -0.008 4.008 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.217 0.783 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.081 0.919 44 H 0.141 0.859 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.888 -20.262 7.310 21.888 hybrid contribution 0.026 -0.451 0.704 0.836 sum -3.863 -20.712 8.014 22.542 Atomic orbital electron populations 1.22479 0.96356 1.02275 1.03015 1.21914 0.92900 0.97105 0.83801 0.87879 1.86613 1.77181 1.28789 1.44285 1.22652 0.97349 1.00858 0.99396 1.21324 0.92940 0.99275 0.86654 1.47868 1.67206 1.10635 1.10266 1.21734 1.00252 0.81505 1.02617 1.18531 0.78563 0.86750 0.83128 1.90996 1.48932 1.14699 1.83716 1.22748 1.11566 0.99570 0.94846 1.22359 0.87372 0.93570 0.96109 1.18284 1.09021 0.91212 1.00124 1.20604 0.96955 0.92783 0.96181 1.19994 1.07401 0.93650 1.01621 1.19517 0.91523 0.84523 0.92925 1.83899 1.68201 1.13834 1.41643 1.21341 1.34482 0.90630 1.00103 0.89005 1.25302 0.97119 0.95219 0.98831 1.70012 1.40123 1.05745 1.33698 0.85785 0.79394 0.78178 0.80137 1.19457 1.20237 1.19430 1.20955 1.08281 0.93885 1.02890 1.20538 0.94009 0.93323 0.92972 0.92552 0.91777 0.91321 0.78294 0.90361 0.91944 0.90494 0.89711 0.92951 0.91747 0.90946 0.85968 0.86088 0.87225 0.86668 0.91939 0.85854 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.53 37.16 0.35 -1.18 16 2 C 0.10 0.99 3.59 -26.73 -0.10 0.90 16 3 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 4 O -0.56 -5.29 12.88 -35.23 -0.45 -5.75 16 5 C -0.16 -1.66 5.22 -26.73 -0.14 -1.80 16 6 C 0.12 1.41 5.30 -4.04 -0.02 1.39 16 7 N -0.62 -7.46 2.87 -183.29 -0.53 -7.99 16 8 C 0.08 0.64 10.19 59.85 0.61 1.25 16 9 C 0.54 8.28 6.73 -13.04 -0.09 8.19 16 10 O -0.51 -10.12 11.91 5.17 0.06 -10.06 16 11 C -0.27 -3.46 9.15 -37.50 -0.34 -3.80 16 12 C 0.03 0.36 9.79 -37.19 -0.36 0.00 16 13 C -0.19 -3.46 4.43 -105.03 -0.47 -3.93 16 14 C -0.05 -0.90 9.78 -39.15 -0.38 -1.28 16 15 C -0.21 -4.67 9.97 -39.47 -0.39 -5.07 16 16 C 0.17 4.36 6.66 -38.88 -0.26 4.10 16 17 O -0.17 -5.14 9.74 0.74 0.01 -5.14 16 18 C -0.39 -11.29 9.48 30.91 0.29 -11.00 16 19 H 0.09 2.49 5.18 -52.49 -0.27 2.22 16 20 C 0.04 1.12 5.49 -17.51 -0.10 1.03 16 21 N -0.86 -25.75 13.67 55.48 0.76 -25.00 16 22 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 C -0.24 -5.71 9.14 -39.46 -0.36 -6.07 16 27 C 0.01 0.21 6.68 -39.15 -0.26 -0.05 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.37 2.02 9.04 45.56 0.41 2.44 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.78 7.75 -51.93 -0.40 0.37 16 35 H 0.08 1.24 7.42 -51.93 -0.39 0.86 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 38 H 0.07 0.48 6.01 -51.93 -0.31 0.17 16 39 H 0.12 1.14 6.14 -52.48 -0.32 0.82 16 40 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 41 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 42 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.12 2.95 5.62 -52.49 -0.29 2.65 16 45 H 0.10 1.85 7.26 -52.49 -0.38 1.47 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -34.92 375.09 -7.28 -42.19 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.74 Total: 7.32 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -2.01 Total: -17.33 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.23 Total: -32.98 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.38 Total: -20.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.92 -7.28 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492090880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.485 kcal (2) G-P(sol) polarization free energy of solvation -34.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds