Wall clock time and date at job start Tue Mar 31 2020 12:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47327 * 2 1 4 4 O 1.42902 * 109.47169 * 119.99694 * 2 1 3 5 5 C 1.53003 * 109.47330 * 239.99829 * 2 1 3 6 6 C 1.52996 * 109.47241 * 175.00180 * 5 2 1 7 7 N 1.46498 * 109.47158 * 180.02562 * 6 5 2 8 8 C 1.46500 * 119.99895 * 269.99832 * 7 6 5 9 9 C 1.34774 * 120.00020 * 89.99746 * 7 6 5 10 10 O 1.21722 * 120.00452 * 0.02562 * 9 7 6 11 11 C 1.46257 * 119.99841 * 179.97438 * 9 7 6 12 12 C 1.35022 * 119.99813 * 186.96360 * 11 9 7 13 13 C 1.46959 * 120.00490 * 10.97207 * 12 11 9 14 14 C 1.40020 * 120.10413 * 226.00721 * 13 12 11 15 15 C 1.37598 * 119.89706 * 179.78492 * 14 13 12 16 16 C 1.39176 * 120.10307 * 0.48868 * 15 14 13 17 17 O 1.35568 * 119.89975 * 179.76445 * 16 15 14 18 18 C 1.34783 * 117.00091 * 174.20401 * 17 16 15 19 19 H 1.08002 * 120.00049 * 5.06318 * 18 17 16 20 20 C 1.38717 * 120.00109 * 185.06988 * 18 17 16 21 21 N 1.31507 * 119.99782 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99934 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46979 * 60.00212 * 22 20 18 24 24 H 1.48501 * 109.46874 * 179.97438 * 22 20 18 25 25 H 1.48490 * 109.47135 * 299.99747 * 22 20 18 26 26 C 1.39178 * 120.20167 * 359.74163 * 16 15 14 27 27 C 1.37604 * 120.09890 * 0.02562 * 26 16 15 28 28 H 1.08994 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46898 * 299.99982 * 1 2 3 30 30 H 1.09003 * 109.46694 * 60.00271 * 1 2 3 31 31 H 0.96696 * 113.99882 * 60.00200 * 4 2 1 32 32 H 1.08994 * 109.47017 * 54.99765 * 5 2 1 33 33 H 1.09002 * 109.47145 * 294.99804 * 5 2 1 34 34 H 1.09002 * 109.47300 * 59.99577 * 6 5 2 35 35 H 1.09004 * 109.47258 * 299.99871 * 6 5 2 36 36 H 1.09005 * 109.47310 * 270.00143 * 8 7 6 37 37 H 1.08997 * 109.46979 * 29.99789 * 8 7 6 38 38 H 1.08997 * 109.47402 * 150.00245 * 8 7 6 39 39 H 1.08004 * 120.00214 * 7.24553 * 11 9 7 40 40 H 1.08010 * 119.99795 * 190.97354 * 12 11 9 41 41 H 1.08006 * 120.05216 * 359.97438 * 14 13 12 42 42 H 1.08006 * 119.94821 * 180.23075 * 15 14 13 43 43 H 0.97001 * 119.99743 * 180.02562 * 21 20 18 44 44 H 1.07997 * 119.94939 * 179.97438 * 26 16 15 45 45 H 1.07997 * 120.04431 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2492 6 6 3.5649 -0.6134 -1.3136 7 7 4.0532 -1.3035 -2.5101 8 6 4.4016 -2.7249 -2.4449 9 6 4.1819 -0.6307 -3.6708 10 8 3.8928 0.5505 -3.7249 11 6 4.6699 -1.3195 -4.8651 12 6 4.9327 -0.6185 -5.9887 13 6 4.9629 0.8502 -5.9485 14 6 4.3051 1.5935 -6.9361 15 6 4.3324 2.9685 -6.8917 16 6 5.0210 3.6206 -5.8731 17 8 5.0492 4.9754 -5.8361 18 6 5.6290 5.5463 -4.7615 19 1 6.1165 4.9306 -4.0201 20 6 5.5995 6.9246 -4.6078 21 7 5.0063 7.6743 -5.5109 22 14 6.4024 7.7157 -3.1183 23 1 7.8498 7.3838 -3.1014 24 1 6.2339 9.1894 -3.1894 25 1 5.7625 7.2030 -1.8803 26 6 5.6803 2.8859 -4.8919 27 6 5.6544 1.5105 -4.9255 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7211 -1.5951 1.2330 32 1 1.6054 -0.2619 -2.1369 33 1 1.7518 -1.7716 -1.2055 34 1 3.9995 -1.0728 -0.4258 35 1 3.8533 0.4369 -1.3573 36 1 5.4532 -2.8294 -2.1778 37 1 3.7850 -3.2159 -1.6919 38 1 4.2258 -3.1871 -3.4162 39 1 4.8158 -2.3896 -4.8496 40 1 5.1207 -1.1372 -6.9173 41 1 3.7745 1.0884 -7.7297 42 1 3.8222 3.5427 -7.6510 43 1 4.9860 8.6382 -5.4036 44 1 6.2138 3.3960 -4.1036 45 1 6.1660 0.9413 -4.1635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492090880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:26 Heat of formation + Delta-G solvation = -86.832641 kcal Electronic energy + Delta-G solvation = -26543.220441 eV Core-core repulsion = 22719.390802 eV Total energy + Delta-G solvation = -3823.829639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20156 -40.49800 -38.95525 -38.20563 -36.48608 -34.65850 -34.02557 -33.11138 -31.79894 -30.61993 -29.45954 -27.52861 -27.29392 -25.58063 -23.82843 -23.35187 -22.50669 -21.69852 -19.89328 -19.45827 -18.95711 -18.19693 -17.46537 -17.04493 -16.81467 -16.50212 -16.27159 -15.97894 -15.72519 -15.53867 -15.20895 -14.88356 -14.64079 -14.39046 -14.29404 -14.05111 -13.97375 -13.71282 -13.64581 -13.55361 -13.20696 -12.91950 -12.86252 -12.74210 -12.56170 -12.44087 -12.19315 -12.13689 -11.92650 -11.76961 -11.25370 -11.13947 -10.92496 -10.57666 -10.38784 -9.76170 -9.41183 -8.58634 -8.50445 -6.17358 0.01434 0.70274 1.09730 1.30068 1.43052 1.46942 2.15065 2.17228 2.46827 2.84602 3.19511 3.44348 3.52454 3.78009 3.80964 3.98617 4.00984 4.07061 4.10827 4.18101 4.33118 4.39894 4.46542 4.54404 4.57415 4.60136 4.71774 4.76370 4.78955 4.88781 4.98279 5.04192 5.08825 5.11054 5.16544 5.21107 5.23908 5.34248 5.40021 5.63643 5.68939 5.72219 5.84692 6.00685 6.24495 6.54403 6.86999 6.93528 7.39686 7.74886 8.72302 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010014 B = 0.003660 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.500626 B = 7648.116185 C = 9513.430962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.106 3.894 3 H 0.075 0.925 4 O -0.574 6.574 5 C -0.150 4.150 6 C 0.120 3.880 7 N -0.617 5.617 8 C 0.072 3.928 9 C 0.520 3.480 10 O -0.568 6.568 11 C -0.233 4.233 12 C 0.004 3.996 13 C -0.155 4.155 14 C -0.047 4.047 15 C -0.219 4.219 16 C 0.125 3.875 17 O -0.229 6.229 18 C -0.417 4.417 19 H 0.094 0.906 20 C -0.020 4.020 21 N -0.918 5.918 22 Si 1.017 2.983 23 H -0.255 1.255 24 H -0.265 1.265 25 H -0.262 1.262 26 C -0.255 4.255 27 C 0.006 3.994 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.390 0.610 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.175 0.825 40 H 0.172 0.828 41 H 0.156 0.844 42 H 0.114 0.886 43 H 0.274 0.726 44 H 0.107 0.893 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.846 -27.526 8.343 29.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.047 3.953 3 H 0.093 0.907 4 O -0.382 6.382 5 C -0.189 4.189 6 C -0.003 4.003 7 N -0.350 5.350 8 C -0.069 4.069 9 C 0.313 3.687 10 O -0.449 6.449 11 C -0.253 4.253 12 C -0.015 4.015 13 C -0.156 4.156 14 C -0.065 4.065 15 C -0.238 4.238 16 C 0.074 3.926 17 O -0.135 6.135 18 C -0.493 4.493 19 H 0.112 0.888 20 C -0.218 4.218 21 N -0.556 5.556 22 Si 0.836 3.164 23 H -0.180 1.180 24 H -0.189 1.189 25 H -0.187 1.187 26 C -0.274 4.274 27 C -0.012 4.012 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.240 0.760 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.192 0.808 40 H 0.189 0.811 41 H 0.174 0.826 42 H 0.132 0.868 43 H 0.083 0.917 44 H 0.125 0.875 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.845 -25.973 8.252 27.522 hybrid contribution -0.075 0.695 0.490 0.854 sum -3.921 -25.278 8.742 27.033 Atomic orbital electron populations 1.22422 0.95096 1.03574 1.02532 1.21723 0.93769 0.95881 0.83942 0.90713 1.86582 1.77413 1.30440 1.43729 1.22504 0.95842 1.02290 0.98227 1.21320 0.94240 0.97272 0.87470 1.47984 1.65466 1.12426 1.09135 1.22097 1.01538 0.78541 1.04774 1.19212 0.78322 0.86374 0.84827 1.90999 1.51581 1.17389 1.84896 1.23199 1.07782 1.01878 0.92437 1.22627 0.89573 0.90451 0.98827 1.18877 1.04837 0.94423 0.97454 1.21107 0.96550 0.91300 0.97528 1.20310 1.07107 0.95488 1.00908 1.20039 0.93696 0.83842 0.94985 1.83862 1.71049 1.15796 1.42785 1.21754 1.35360 0.91517 1.00693 0.88827 1.26585 0.97624 0.95269 1.02274 1.70150 1.42899 1.06117 1.36399 0.84685 0.78755 0.77374 0.75602 1.17961 1.18881 1.18689 1.20989 1.08603 0.95449 1.02377 1.20709 0.94481 0.91972 0.94069 0.90323 0.91829 0.92270 0.76034 0.93188 0.88954 0.88375 0.93912 0.91776 0.89339 0.88914 0.80790 0.81062 0.82604 0.86761 0.91657 0.87541 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.78 9.53 71.98 0.69 -2.09 16 2 C 0.11 2.01 3.59 30.60 0.11 2.12 16 3 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 4 O -0.57 -9.65 12.88 -148.98 -1.92 -11.57 16 5 C -0.15 -2.83 5.22 30.59 0.16 -2.67 16 6 C 0.12 2.66 5.30 86.38 0.46 3.12 16 7 N -0.62 -12.78 2.87 -852.01 -2.45 -15.23 16 8 C 0.07 0.71 10.19 127.77 1.30 2.01 16 9 C 0.52 14.61 6.73 86.33 0.58 15.19 16 10 O -0.57 -22.67 11.91 -4.42 -0.05 -22.73 16 11 C -0.23 -4.75 9.15 23.62 0.22 -4.53 16 12 C 0.00 0.10 9.79 23.82 0.23 0.34 16 13 C -0.16 -5.47 4.43 -20.13 -0.09 -5.56 16 14 C -0.05 -1.74 9.78 22.55 0.22 -1.52 16 15 C -0.22 -10.29 9.97 22.34 0.22 -10.06 16 16 C 0.13 6.93 6.66 22.72 0.15 7.08 16 17 O -0.23 -14.86 9.74 -20.27 -0.20 -15.06 16 18 C -0.42 -26.28 9.48 67.93 0.64 -25.63 16 19 H 0.09 5.57 5.18 -2.91 -0.02 5.55 16 20 C -0.02 -1.19 5.49 84.86 0.47 -0.72 16 21 N -0.92 -58.75 13.67 21.62 0.30 -58.46 16 22 Si 1.02 45.59 29.55 68.60 2.03 47.62 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 26 C -0.25 -12.92 9.14 22.35 0.20 -12.72 16 27 C 0.01 0.25 6.68 22.55 0.15 0.40 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.39 2.96 9.04 -74.06 -0.67 2.29 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 1.75 7.75 -2.39 -0.02 1.73 16 35 H 0.04 1.32 7.42 -2.38 -0.02 1.30 16 36 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.09 0.51 8.07 -2.39 -0.02 0.49 16 38 H 0.09 0.57 6.01 -2.39 -0.01 0.55 16 39 H 0.17 1.82 6.14 -2.91 -0.02 1.80 16 40 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.16 4.29 8.06 -2.91 -0.02 4.26 16 42 H 0.11 5.23 8.06 -2.91 -0.02 5.20 16 43 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 44 H 0.11 5.59 5.62 -2.91 -0.02 5.57 16 45 H 0.11 4.15 7.26 -2.91 -0.02 4.13 16 Total: -1.00 -87.40 375.09 3.76 -83.64 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.33 Total: 27.04 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 5.72 Total: -35.25 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -2.15 Total: -73.69 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -2.17 Total: -49.36 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -87.40 3.76 -83.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492090880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.190 kcal (2) G-P(sol) polarization free energy of solvation -87.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds