Wall clock time and date at job start Tue Mar 31 2020 13:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46928 * 2 1 4 4 C 1.52997 * 109.47296 * 239.99869 * 2 1 3 5 5 O 1.42899 * 109.47312 * 64.99536 * 4 2 1 6 6 C 1.53005 * 109.47099 * 119.99422 * 2 1 3 7 7 H 1.09000 * 109.46688 * 179.97438 * 6 2 1 8 8 C 1.52998 * 109.46578 * 60.00379 * 6 2 1 9 9 N 1.46499 * 109.47260 * 300.00244 * 6 2 1 10 10 C 1.34770 * 119.99973 * 204.99926 * 9 6 2 11 11 O 1.21731 * 119.99913 * 359.97438 * 10 9 6 12 12 C 1.46253 * 120.00382 * 179.97438 * 10 9 6 13 13 C 1.35020 * 120.00176 * 173.21377 * 12 10 9 14 14 C 1.46958 * 120.00283 * 348.68462 * 13 12 10 15 15 C 1.40024 * 120.09980 * 316.40708 * 14 13 12 16 16 C 1.37596 * 119.89740 * 179.69538 * 15 14 13 17 17 C 1.39178 * 120.09824 * 0.59758 * 16 15 14 18 18 O 1.35573 * 119.89404 * 179.69703 * 17 16 15 19 19 C 1.34789 * 116.99752 * 174.33718 * 18 17 16 20 20 H 1.08004 * 119.99882 * 5.06182 * 19 18 17 21 21 C 1.38719 * 119.99958 * 185.06063 * 19 18 17 22 22 N 1.31506 * 120.00182 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99861 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47157 * 59.99885 * 23 21 19 25 25 H 1.48501 * 109.47238 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47448 * 300.00237 * 23 21 19 27 27 C 1.39173 * 120.20489 * 359.67372 * 17 16 15 28 28 C 1.37601 * 120.10231 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47450 * 300.00220 * 1 2 3 31 31 H 1.08998 * 109.47384 * 60.00178 * 1 2 3 32 32 H 1.08998 * 109.47257 * 185.00117 * 4 2 1 33 33 H 1.09004 * 109.46883 * 304.99932 * 4 2 1 34 34 H 0.96692 * 114.00275 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.47288 * 299.99238 * 8 6 2 36 36 H 1.08997 * 109.47162 * 60.00154 * 8 6 2 37 37 H 1.09002 * 109.46430 * 179.97438 * 8 6 2 38 38 H 0.97005 * 119.99951 * 24.99702 * 9 6 2 39 39 H 1.08004 * 119.99553 * 353.21369 * 12 10 9 40 40 H 1.08004 * 119.99844 * 168.68499 * 13 12 10 41 41 H 1.08004 * 120.04892 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.94817 * 180.27504 * 16 15 14 43 43 H 0.96997 * 119.99931 * 180.02562 * 22 21 19 44 44 H 1.08001 * 119.94942 * 179.97438 * 27 17 16 45 45 H 1.07998 * 120.05003 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6619 0.0166 -2.4130 6 6 2.0400 -0.7211 1.2494 7 1 3.1300 -0.7215 1.2491 8 6 1.5300 -2.1636 1.2493 9 7 1.5516 -0.0305 2.4455 10 6 2.2284 -0.1332 3.6064 11 8 3.2452 -0.8002 3.6612 12 6 1.7412 0.5568 4.8004 13 6 2.3382 0.3456 5.9929 14 6 3.3047 -0.7506 6.1470 15 6 3.0321 -2.0095 5.5979 16 6 3.9428 -3.0312 5.7393 17 6 5.1278 -2.8183 6.4375 18 8 6.0194 -3.8297 6.5796 19 6 7.1970 -3.5298 7.1627 20 1 7.3638 -2.5419 7.5661 21 6 8.1948 -4.4901 7.2449 22 7 7.9915 -5.6931 6.7542 23 14 9.8265 -4.0746 8.0537 24 1 9.5925 -3.6787 9.4657 25 1 10.7154 -5.2636 8.0143 26 1 10.4687 -2.9515 7.3247 27 6 5.4005 -1.5703 6.9899 28 6 4.4984 -0.5410 6.8483 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.1263 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 1.9532 -0.3830 -3.2440 35 1 0.4400 -2.1637 1.2494 36 1 1.8934 -2.6775 0.3594 37 1 1.8937 -2.6775 2.1392 38 1 0.7412 0.5008 2.4018 39 1 0.9039 1.2352 4.7282 40 1 2.1054 0.9825 6.8336 41 1 2.1105 -2.1770 5.0603 42 1 3.7354 -4.0013 5.3123 43 1 8.6891 -6.3646 6.8120 44 1 6.3211 -1.4098 7.5313 45 1 4.7110 0.4273 7.2769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492139352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:59 Heat of formation + Delta-G solvation = -67.172075 kcal Electronic energy + Delta-G solvation = -26361.971753 eV Core-core repulsion = 22538.994660 eV Total energy + Delta-G solvation = -3822.977093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.01400 -38.88261 -38.07445 -36.58761 -35.75388 -33.03421 -32.61638 -32.06679 -30.10178 -29.48054 -27.91968 -26.69926 -25.48009 -24.57917 -22.69004 -21.76003 -20.92385 -19.72967 -19.12729 -17.97189 -17.80392 -17.16503 -16.64891 -15.83984 -15.71378 -14.88917 -14.71714 -14.52075 -14.31183 -14.25593 -14.10578 -13.66139 -13.43841 -13.23137 -13.15378 -12.84222 -12.64786 -12.48968 -12.32430 -12.17633 -12.11585 -11.68215 -11.36229 -11.23777 -10.97979 -10.89806 -10.87208 -10.67322 -10.62658 -10.40543 -10.24531 -9.46915 -9.38453 -9.14276 -8.96445 -8.67658 -7.90479 -6.84403 -6.44503 -4.00319 1.26864 2.44176 2.72420 3.14285 3.16949 3.18382 3.24421 3.66546 3.98264 3.99357 4.48524 4.60894 4.71441 4.81664 5.03969 5.10521 5.12076 5.16419 5.24782 5.27088 5.30669 5.37270 5.52316 5.58108 5.62225 5.63888 5.75375 5.84818 5.86074 5.88766 6.00112 6.25548 6.28269 6.35358 6.46236 6.60364 6.62385 6.80938 7.05406 7.13691 7.28649 7.38033 7.47067 7.52035 7.71244 7.94078 8.02202 8.58370 9.01139 9.73237 10.73360 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.002746 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.779266 B =10194.855263 C =11281.256478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.082 0.918 4 C 0.081 3.919 5 O -0.574 6.574 6 C 0.150 3.850 7 H 0.089 0.911 8 C -0.168 4.168 9 N -0.731 5.731 10 C 0.539 3.461 11 O -0.511 6.511 12 C -0.267 4.267 13 C 0.027 3.973 14 C -0.189 4.189 15 C 0.013 3.987 16 C -0.203 4.203 17 C 0.171 3.829 18 O -0.173 6.173 19 C -0.390 4.390 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 C -0.251 4.251 28 C -0.042 4.042 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.380 0.620 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.394 0.606 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.125 0.875 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.910 11.798 -11.518 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.100 0.900 4 C 0.002 3.998 5 O -0.380 6.380 6 C 0.045 3.955 7 H 0.107 0.893 8 C -0.227 4.227 9 N -0.385 5.385 10 C 0.329 3.671 11 O -0.387 6.387 12 C -0.288 4.288 13 C 0.008 3.992 14 C -0.190 4.190 15 C -0.005 4.005 16 C -0.222 4.222 17 C 0.116 3.884 18 O -0.075 6.075 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.194 1.194 27 C -0.270 4.270 28 C -0.060 4.060 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.227 0.773 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.229 0.771 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.143 0.857 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.279 11.209 -11.104 21.279 hybrid contribution 0.660 0.228 -0.127 0.709 sum -13.619 11.437 -11.231 21.034 Atomic orbital electron populations 1.21835 0.94399 1.02261 1.01822 1.21338 0.97084 1.00599 0.92734 0.90007 1.22212 0.98376 0.94127 0.85038 1.86435 1.81549 1.53538 1.16435 1.20722 0.99978 0.91440 0.83354 0.89279 1.22306 1.01363 0.96107 1.02883 1.46070 1.29303 1.53347 1.09751 1.18501 0.84119 0.80920 0.83538 1.90997 1.24084 1.39370 1.84222 1.22600 1.05439 1.07747 0.93055 1.22331 0.89929 0.91747 0.95240 1.18288 0.97583 0.93834 1.09282 1.20428 0.96761 0.91281 0.92065 1.19994 0.94903 1.00108 1.07190 1.19525 0.89922 0.87569 0.91348 1.83907 1.23954 1.31280 1.68385 1.21348 0.88778 0.99808 1.36699 0.88956 1.25316 0.99168 0.94797 0.97252 1.70012 1.34236 1.03137 1.42130 0.85774 0.79990 0.78222 0.79417 1.19453 1.20262 1.19447 1.20946 1.02523 0.93902 1.09630 1.20743 0.92827 0.97146 0.95299 0.92141 0.92851 0.91784 0.93252 0.92944 0.77335 0.92231 0.91876 0.91474 0.77112 0.86241 0.86129 0.88122 0.86904 0.91920 0.85686 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.57 37.16 0.32 -0.78 16 2 C -0.10 -0.86 2.62 -90.62 -0.24 -1.10 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.08 0.65 5.92 37.16 0.22 0.87 16 5 O -0.57 -4.66 13.19 -35.23 -0.46 -5.12 16 6 C 0.15 1.61 2.40 -67.93 -0.16 1.45 16 7 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 8 C -0.17 -1.76 8.78 37.16 0.33 -1.44 16 9 N -0.73 -8.03 4.99 -55.25 -0.28 -8.30 16 10 C 0.54 7.89 6.74 -13.04 -0.09 7.80 16 11 O -0.51 -9.83 11.84 5.16 0.06 -9.76 16 12 C -0.27 -3.38 9.90 -37.51 -0.37 -3.75 16 13 C 0.03 0.38 9.80 -37.20 -0.36 0.02 16 14 C -0.19 -3.51 4.54 -105.03 -0.48 -3.98 16 15 C 0.01 0.26 6.59 -39.15 -0.26 0.01 16 16 C -0.20 -4.67 9.97 -39.47 -0.39 -5.06 16 17 C 0.17 4.38 6.66 -38.89 -0.26 4.12 16 18 O -0.17 -5.11 9.74 0.71 0.01 -5.10 16 19 C -0.39 -11.18 9.48 30.91 0.29 -10.89 16 20 H 0.09 2.45 5.18 -52.48 -0.27 2.18 16 21 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 22 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 23 Si 0.94 20.83 29.55 -169.99 -5.02 15.80 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 C -0.25 -5.76 9.14 -39.47 -0.36 -6.12 16 28 C -0.04 -0.82 9.78 -39.15 -0.38 -1.20 16 29 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 30 H 0.05 0.35 6.51 -51.93 -0.34 0.01 16 31 H 0.06 0.51 7.82 -51.93 -0.41 0.11 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.37 6.71 -51.93 -0.35 0.02 16 34 H 0.38 1.45 9.12 45.56 0.42 1.87 16 35 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 36 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.39 3.25 6.85 -40.82 -0.28 2.98 16 39 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 41 H 0.10 1.83 7.02 -52.48 -0.37 1.47 16 42 H 0.11 2.54 8.06 -52.49 -0.42 2.11 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 44 H 0.13 2.84 5.62 -52.49 -0.29 2.55 16 45 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -34.77 367.48 -7.08 -41.85 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.39 Total: 9.01 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -2.29 Total: -19.05 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.48 Total: -33.16 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.40 Total: -19.99 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.77 -7.08 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492139352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.326 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds