Wall clock time and date at job start Tue Mar 31 2020 13:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46928 * 2 1 4 4 C 1.52997 * 109.47296 * 239.99869 * 2 1 3 5 5 O 1.42899 * 109.47312 * 64.99536 * 4 2 1 6 6 C 1.53005 * 109.47099 * 119.99422 * 2 1 3 7 7 H 1.09000 * 109.46688 * 179.97438 * 6 2 1 8 8 C 1.52998 * 109.46578 * 60.00379 * 6 2 1 9 9 N 1.46499 * 109.47260 * 300.00244 * 6 2 1 10 10 C 1.34770 * 119.99973 * 204.99926 * 9 6 2 11 11 O 1.21731 * 119.99913 * 359.97438 * 10 9 6 12 12 C 1.46253 * 120.00382 * 179.97438 * 10 9 6 13 13 C 1.35020 * 120.00176 * 173.21377 * 12 10 9 14 14 C 1.46958 * 120.00283 * 348.68462 * 13 12 10 15 15 C 1.40024 * 120.09980 * 316.40708 * 14 13 12 16 16 C 1.37596 * 119.89740 * 179.69538 * 15 14 13 17 17 C 1.39178 * 120.09824 * 0.59758 * 16 15 14 18 18 O 1.35573 * 119.89404 * 179.69703 * 17 16 15 19 19 C 1.34789 * 116.99752 * 174.33718 * 18 17 16 20 20 H 1.08004 * 119.99882 * 5.06182 * 19 18 17 21 21 C 1.38719 * 119.99958 * 185.06063 * 19 18 17 22 22 N 1.31506 * 120.00182 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99861 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47157 * 59.99885 * 23 21 19 25 25 H 1.48501 * 109.47238 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47448 * 300.00237 * 23 21 19 27 27 C 1.39173 * 120.20489 * 359.67372 * 17 16 15 28 28 C 1.37601 * 120.10231 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47450 * 300.00220 * 1 2 3 31 31 H 1.08998 * 109.47384 * 60.00178 * 1 2 3 32 32 H 1.08998 * 109.47257 * 185.00117 * 4 2 1 33 33 H 1.09004 * 109.46883 * 304.99932 * 4 2 1 34 34 H 0.96692 * 114.00275 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.47288 * 299.99238 * 8 6 2 36 36 H 1.08997 * 109.47162 * 60.00154 * 8 6 2 37 37 H 1.09002 * 109.46430 * 179.97438 * 8 6 2 38 38 H 0.97005 * 119.99951 * 24.99702 * 9 6 2 39 39 H 1.08004 * 119.99553 * 353.21369 * 12 10 9 40 40 H 1.08004 * 119.99844 * 168.68499 * 13 12 10 41 41 H 1.08004 * 120.04892 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.94817 * 180.27504 * 16 15 14 43 43 H 0.96997 * 119.99931 * 180.02562 * 22 21 19 44 44 H 1.08001 * 119.94942 * 179.97438 * 27 17 16 45 45 H 1.07998 * 120.05003 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6619 0.0166 -2.4130 6 6 2.0400 -0.7211 1.2494 7 1 3.1300 -0.7215 1.2491 8 6 1.5300 -2.1636 1.2493 9 7 1.5516 -0.0305 2.4455 10 6 2.2284 -0.1332 3.6064 11 8 3.2452 -0.8002 3.6612 12 6 1.7412 0.5568 4.8004 13 6 2.3382 0.3456 5.9929 14 6 3.3047 -0.7506 6.1470 15 6 3.0321 -2.0095 5.5979 16 6 3.9428 -3.0312 5.7393 17 6 5.1278 -2.8183 6.4375 18 8 6.0194 -3.8297 6.5796 19 6 7.1970 -3.5298 7.1627 20 1 7.3638 -2.5419 7.5661 21 6 8.1948 -4.4901 7.2449 22 7 7.9915 -5.6931 6.7542 23 14 9.8265 -4.0746 8.0537 24 1 9.5925 -3.6787 9.4657 25 1 10.7154 -5.2636 8.0143 26 1 10.4687 -2.9515 7.3247 27 6 5.4005 -1.5703 6.9899 28 6 4.4984 -0.5410 6.8483 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.1263 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 1.9532 -0.3830 -3.2440 35 1 0.4400 -2.1637 1.2494 36 1 1.8934 -2.6775 0.3594 37 1 1.8937 -2.6775 2.1392 38 1 0.7412 0.5008 2.4018 39 1 0.9039 1.2352 4.7282 40 1 2.1054 0.9825 6.8336 41 1 2.1105 -2.1770 5.0603 42 1 3.7354 -4.0013 5.3123 43 1 8.6891 -6.3646 6.8120 44 1 6.3211 -1.4098 7.5313 45 1 4.7110 0.4273 7.2769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492139352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:58 Heat of formation + Delta-G solvation = -93.453413 kcal Electronic energy + Delta-G solvation = -26363.111397 eV Core-core repulsion = 22538.994660 eV Total energy + Delta-G solvation = -3824.116737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22611 -40.53004 -39.09107 -38.07131 -36.72387 -34.58612 -33.97829 -33.48143 -31.81488 -30.40988 -29.40143 -27.44875 -27.33266 -25.66015 -23.95016 -23.43984 -22.34574 -20.76855 -20.21716 -19.73445 -18.90203 -18.46342 -18.08819 -16.79921 -16.55335 -16.39370 -16.33091 -15.87502 -15.75489 -15.52727 -15.25487 -14.95620 -14.83235 -14.59155 -14.34961 -14.30528 -13.83916 -13.68277 -13.55870 -13.30380 -13.16130 -13.02608 -12.90708 -12.60765 -12.36650 -12.23058 -12.12970 -11.98174 -11.72517 -11.58523 -11.23803 -10.95223 -10.86623 -10.63432 -10.37733 -10.02912 -9.56507 -8.54652 -8.48250 -6.15748 0.00710 0.72268 1.13890 1.33077 1.46643 1.50244 2.17161 2.30631 2.51042 2.87274 3.21201 3.33877 3.53074 3.74853 3.88160 4.01147 4.07271 4.13173 4.17445 4.20928 4.31764 4.39351 4.46823 4.55568 4.60961 4.65276 4.74118 4.77559 4.87008 4.98290 5.00066 5.06701 5.10013 5.14460 5.24342 5.27845 5.28931 5.47194 5.49662 5.61747 5.68814 5.73089 5.86007 6.02467 6.25767 6.74238 6.87309 6.95383 7.48534 7.77676 8.74642 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.002746 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.779266 B =10194.855263 C =11281.256478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.075 0.925 4 C 0.080 3.920 5 O -0.588 6.588 6 C 0.152 3.848 7 H 0.058 0.942 8 C -0.164 4.164 9 N -0.711 5.711 10 C 0.526 3.474 11 O -0.566 6.566 12 C -0.231 4.231 13 C 0.004 3.996 14 C -0.160 4.160 15 C 0.016 3.984 16 C -0.221 4.221 17 C 0.127 3.873 18 O -0.231 6.231 19 C -0.416 4.416 20 H 0.102 0.898 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.021 2.979 24 H -0.254 1.254 25 H -0.270 1.270 26 H -0.259 1.259 27 C -0.259 4.259 28 C -0.049 4.049 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.398 0.602 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.032 0.968 38 H 0.413 0.587 39 H 0.173 0.827 40 H 0.169 0.831 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.273 0.727 44 H 0.120 0.880 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.638 15.821 -11.853 26.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.093 0.907 4 C 0.001 3.999 5 O -0.396 6.396 6 C 0.046 3.954 7 H 0.076 0.924 8 C -0.222 4.222 9 N -0.365 5.365 10 C 0.316 3.684 11 O -0.446 6.446 12 C -0.252 4.252 13 C -0.015 4.015 14 C -0.161 4.161 15 C -0.002 4.002 16 C -0.240 4.240 17 C 0.076 3.924 18 O -0.137 6.137 19 C -0.492 4.492 20 H 0.119 0.881 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.840 3.160 24 H -0.178 1.178 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.279 4.279 28 C -0.066 4.066 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.247 0.753 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.251 0.749 39 H 0.191 0.809 40 H 0.186 0.814 41 H 0.137 0.863 42 H 0.118 0.882 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.102 15.300 -11.484 25.661 hybrid contribution 1.068 -0.716 -0.312 1.323 sum -16.034 14.583 -11.796 24.676 Atomic orbital electron populations 1.21815 0.92922 1.02747 1.02445 1.21231 0.98138 0.99782 0.91812 0.90680 1.22187 0.98134 0.94515 0.85022 1.86381 1.81742 1.54140 1.17325 1.20675 0.98344 0.92059 0.84288 0.92394 1.22260 1.02512 0.95555 1.01846 1.45932 1.29241 1.52397 1.08885 1.19116 0.83658 0.80496 0.85087 1.91007 1.26629 1.41853 1.85133 1.23075 1.04756 1.06119 0.91210 1.22571 0.89483 0.91615 0.97834 1.18875 0.97527 0.94541 1.05113 1.20651 0.96613 0.91252 0.91697 1.20169 0.95375 1.00821 1.07633 1.20009 0.90442 0.88484 0.93484 1.83876 1.25178 1.33337 1.71332 1.21851 0.89379 1.00653 1.37348 0.88062 1.26667 1.03265 0.94383 0.97789 1.70168 1.35937 1.04659 1.45164 0.84625 0.74271 0.78364 0.78777 1.17824 1.19411 1.18296 1.21088 1.03262 0.93953 1.09558 1.21183 0.92265 0.97821 0.95378 0.91696 0.91439 0.91970 0.93857 0.91896 0.75255 0.90208 0.90716 0.94832 0.74918 0.80930 0.81416 0.86320 0.88184 0.91752 0.86266 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.57 71.98 0.62 -1.04 16 2 C -0.09 -1.38 2.62 -10.79 -0.03 -1.41 16 3 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 4 C 0.08 1.15 5.92 71.98 0.43 1.58 16 5 O -0.59 -8.39 13.19 -148.98 -1.97 -10.35 16 6 C 0.15 3.05 2.40 44.99 0.11 3.16 16 7 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 8 C -0.16 -3.26 8.78 71.98 0.63 -2.63 16 9 N -0.71 -13.39 4.99 -446.91 -2.23 -15.62 16 10 C 0.53 13.79 6.74 86.33 0.58 14.38 16 11 O -0.57 -21.41 11.84 -4.45 -0.05 -21.46 16 12 C -0.23 -4.49 9.90 23.61 0.23 -4.26 16 13 C 0.00 0.10 9.80 23.82 0.23 0.33 16 14 C -0.16 -5.56 4.54 -20.13 -0.09 -5.65 16 15 C 0.02 0.64 6.59 22.55 0.15 0.79 16 16 C -0.22 -10.83 9.97 22.34 0.22 -10.61 16 17 C 0.13 6.95 6.66 22.72 0.15 7.10 16 18 O -0.23 -14.89 9.74 -20.37 -0.20 -15.09 16 19 C -0.42 -25.56 9.48 67.93 0.64 -24.92 16 20 H 0.10 5.71 5.18 -2.91 -0.02 5.69 16 21 C -0.02 -1.40 5.49 84.86 0.47 -0.93 16 22 N -0.92 -58.70 13.67 21.62 0.30 -58.41 16 23 Si 1.02 44.40 29.55 68.60 2.03 46.43 16 24 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 27 C -0.26 -12.33 9.14 22.34 0.20 -12.12 16 28 C -0.05 -1.83 9.78 22.55 0.22 -1.61 16 29 H 0.06 0.72 6.43 -2.38 -0.02 0.70 16 30 H 0.07 0.58 6.51 -2.38 -0.02 0.56 16 31 H 0.06 0.80 7.82 -2.39 -0.02 0.78 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.77 6.71 -2.38 -0.02 0.76 16 34 H 0.40 2.31 9.12 -74.06 -0.68 1.63 16 35 H 0.08 1.25 6.43 -2.39 -0.02 1.24 16 36 H 0.07 1.30 6.54 -2.39 -0.02 1.28 16 37 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.41 4.82 6.85 -92.70 -0.63 4.19 16 39 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.12 4.22 7.02 -2.91 -0.02 4.20 16 42 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 43 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 44 H 0.12 5.66 5.62 -2.91 -0.02 5.65 16 45 H 0.15 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -85.31 367.48 2.37 -82.94 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.28 Total: 29.40 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: 4.77 Total: -37.85 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -1.94 Total: -74.02 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -2.22 Total: -46.90 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -85.31 2.37 -82.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492139352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.512 kcal (2) G-P(sol) polarization free energy of solvation -85.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds