Wall clock time and date at job start Tue Mar 31 2020 12:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47575 * 2 1 4 4 C 1.53001 * 109.47466 * 239.99460 * 2 1 3 5 5 C 1.52998 * 109.47472 * 175.00077 * 4 2 1 6 6 H 1.08997 * 109.47178 * 305.00773 * 5 4 2 7 7 C 1.53003 * 109.47548 * 184.99920 * 5 4 2 8 8 O 1.42908 * 109.46914 * 65.00170 * 5 4 2 9 9 N 1.46502 * 109.46985 * 119.99648 * 2 1 3 10 10 C 1.34779 * 120.00004 * 274.99926 * 9 2 1 11 11 O 1.21718 * 119.99908 * 0.02562 * 10 9 2 12 12 C 1.46255 * 119.99865 * 179.97438 * 10 9 2 13 13 C 1.35018 * 120.00031 * 179.97438 * 12 10 9 14 14 C 1.46960 * 120.00380 * 180.02562 * 13 12 10 15 15 C 1.40026 * 120.10267 * 180.02562 * 14 13 12 16 16 C 1.37594 * 119.89660 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10071 * 0.27233 * 16 15 14 18 18 O 1.35579 * 119.89553 * 179.70771 * 17 16 15 19 19 C 1.34781 * 117.00320 * 354.44312 * 18 17 16 20 20 H 1.08005 * 119.99725 * 5.05569 * 19 18 17 21 21 C 1.38715 * 120.00342 * 185.05925 * 19 18 17 22 22 N 1.31515 * 119.99717 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00159 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47198 * 89.99794 * 23 21 19 25 25 H 1.48504 * 109.46987 * 209.99932 * 23 21 19 26 26 H 1.48498 * 109.46817 * 329.99488 * 23 21 19 27 27 C 1.39173 * 120.20477 * 359.44770 * 17 16 15 28 28 C 1.37597 * 120.09926 * 0.55723 * 27 17 16 29 29 H 1.09005 * 109.46869 * 60.00053 * 1 2 3 30 30 H 1.08995 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47432 * 300.00526 * 1 2 3 32 32 H 1.08998 * 109.47158 * 295.00689 * 4 2 1 33 33 H 1.08995 * 109.46883 * 55.00552 * 4 2 1 34 34 H 1.09000 * 109.46673 * 60.00230 * 7 5 4 35 35 H 1.08997 * 109.47222 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.46849 * 300.00763 * 7 5 4 37 37 H 0.96701 * 113.99610 * 180.02562 * 8 5 4 38 38 H 0.97004 * 120.00347 * 95.00293 * 9 2 1 39 39 H 1.08003 * 120.00046 * 0.02562 * 12 10 9 40 40 H 1.08003 * 119.99920 * 0.02562 * 13 12 10 41 41 H 1.08002 * 120.05214 * 359.95709 * 15 14 13 42 42 H 1.08001 * 119.95149 * 180.02562 * 16 15 14 43 43 H 0.96993 * 119.99812 * 180.02562 * 22 21 19 44 44 H 1.08004 * 119.95204 * 180.27325 * 27 17 16 45 45 H 1.08000 * 120.05069 * 179.74232 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0646 -1.2253 -2.6239 8 8 4.1392 -1.3166 -0.2100 9 7 2.0182 -0.6905 1.1962 10 6 2.1470 -0.0181 2.3572 11 8 1.8571 1.1628 2.4119 12 6 2.6339 -0.7077 3.5515 13 6 2.7634 -0.0339 4.7144 14 6 3.2532 -0.7266 5.9144 15 6 3.3877 -0.0300 7.1217 16 6 3.8462 -0.6829 8.2427 17 6 4.1815 -2.0321 8.1766 18 8 4.6385 -2.6698 9.2823 19 6 4.8534 -1.9158 10.3787 20 1 4.5850 -0.8696 10.3757 21 6 5.4192 -2.4834 11.5109 22 7 5.7455 -3.7575 11.5147 23 14 5.7163 -1.4386 13.0306 24 1 4.5188 -1.4883 13.9073 25 1 6.8929 -1.9630 13.7695 26 1 5.9735 -0.0341 12.6230 27 6 4.0439 -2.7299 6.9804 28 6 3.5863 -2.0853 5.8542 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -1.7716 -1.2055 33 1 1.6055 -0.2619 -2.1369 34 1 3.6265 -0.6889 -3.4656 35 1 5.1509 -1.1480 -2.6699 36 1 3.7723 -2.2743 -2.6697 37 1 5.1055 -1.2900 -0.1867 38 1 2.2490 -1.6317 1.1528 39 1 2.8908 -1.7556 3.5031 40 1 2.5069 1.0141 4.7628 41 1 3.1323 1.0181 7.1727 42 1 3.9500 -0.1466 9.1744 43 1 6.1407 -4.1545 12.3065 44 1 4.3011 -3.7779 6.9348 45 1 3.4838 -2.6266 4.9252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492455534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:15 Heat of formation + Delta-G solvation = -88.995088 kcal Electronic energy + Delta-G solvation = -25343.049067 eV Core-core repulsion = 21519.125657 eV Total energy + Delta-G solvation = -3823.923410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.73587 -39.11202 -38.02693 -36.83897 -35.47632 -33.12693 -32.39030 -32.14060 -30.58632 -30.36945 -28.04040 -27.19692 -25.64509 -23.64150 -22.21519 -21.91190 -21.16924 -20.48736 -19.21377 -18.11025 -17.70842 -17.06294 -16.90612 -16.10458 -15.28051 -15.01301 -14.75395 -14.52639 -14.46269 -14.36756 -13.87558 -13.77345 -13.43179 -13.31384 -13.01036 -12.97853 -12.73987 -12.54764 -12.41998 -12.38627 -11.94734 -11.87729 -11.71473 -11.64736 -11.24783 -11.09856 -11.00652 -10.89260 -10.63476 -10.50533 -10.29464 -9.60665 -9.53069 -9.44809 -8.92378 -8.77179 -8.33378 -7.05241 -6.61473 -4.16529 1.17767 2.17874 2.65025 3.06112 3.07103 3.11704 3.39513 3.72922 3.85224 3.94128 4.24806 4.55305 4.57114 4.76451 4.95309 4.96335 5.03896 5.09603 5.11819 5.18048 5.26465 5.35374 5.40988 5.49752 5.53388 5.57453 5.58860 5.71041 5.73517 5.75136 5.91047 6.05609 6.06587 6.18455 6.51110 6.57585 6.64337 6.72112 6.84920 6.96916 7.18271 7.28651 7.33910 7.36836 7.68882 7.81555 7.84083 8.55355 8.83492 9.51176 10.55370 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027181 B = 0.001984 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.872068 B =14107.738988 C =14662.611517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.083 0.917 4 C -0.122 4.122 5 C 0.101 3.899 6 H 0.054 0.946 7 C -0.186 4.186 8 O -0.560 6.560 9 N -0.710 5.710 10 C 0.556 3.444 11 O -0.568 6.568 12 C -0.273 4.273 13 C 0.029 3.971 14 C -0.194 4.194 15 C -0.037 4.037 16 C -0.242 4.242 17 C 0.166 3.834 18 O -0.164 6.164 19 C -0.393 4.393 20 H 0.097 0.903 21 C 0.041 3.959 22 N -0.853 5.853 23 Si 0.944 3.056 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.265 1.265 27 C -0.199 4.199 28 C -0.044 4.044 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.377 0.623 38 H 0.403 0.597 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.273 0.727 44 H 0.120 0.880 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 4.539 -23.612 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.101 0.899 4 C -0.160 4.160 5 C 0.042 3.958 6 H 0.072 0.928 7 C -0.244 4.244 8 O -0.366 6.366 9 N -0.361 5.361 10 C 0.348 3.652 11 O -0.450 6.450 12 C -0.294 4.294 13 C 0.009 3.991 14 C -0.195 4.195 15 C -0.056 4.056 16 C -0.261 4.261 17 C 0.110 3.890 18 O -0.065 6.065 19 C -0.468 4.468 20 H 0.114 0.886 21 C -0.165 4.165 22 N -0.487 5.487 23 Si 0.768 3.232 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.190 1.190 27 C -0.219 4.219 28 C -0.062 4.062 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.224 0.776 38 H 0.239 0.761 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.148 0.852 43 H 0.083 0.917 44 H 0.138 0.862 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.465 4.813 -23.225 24.340 hybrid contribution 0.887 0.121 0.498 1.024 sum -4.578 4.934 -22.727 23.703 Atomic orbital electron populations 1.22197 0.95587 1.02037 1.02466 1.20790 0.93563 0.97325 0.84276 0.89914 1.21990 0.93678 1.02239 0.98108 1.21760 0.93474 0.94931 0.85593 0.92840 1.22528 1.01543 1.02176 0.98144 1.86516 1.25132 1.76774 1.48141 1.45778 1.67306 1.14187 1.08835 1.18359 0.76818 0.86364 0.83651 1.90747 1.52297 1.16267 1.85710 1.22482 1.12803 1.00921 0.93156 1.22252 0.87546 0.98477 0.90789 1.18483 1.13107 0.94403 0.93554 1.20986 0.94685 0.98290 0.91605 1.21097 1.09923 0.95327 0.99768 1.19611 0.90974 0.90820 0.87603 1.83906 1.69649 1.36037 1.16954 1.21459 1.42080 0.94384 0.88909 0.88597 1.25386 0.95743 0.96496 0.98884 1.70016 1.37691 1.11053 1.29893 0.85653 0.78503 0.79262 0.79736 1.19675 1.20087 1.18976 1.20148 1.10224 1.00427 0.91066 1.20889 0.95224 0.93253 0.96855 0.92025 0.92546 0.91837 0.90531 0.89291 0.91743 0.92355 0.91777 0.77561 0.76119 0.86029 0.86087 0.86873 0.85172 0.91667 0.86177 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.15 0.35 -1.11 16 2 C 0.15 1.39 2.57 -67.93 -0.17 1.22 16 3 H 0.08 0.95 7.58 -51.93 -0.39 0.55 16 4 C -0.12 -0.81 4.56 -26.73 -0.12 -0.93 16 5 C 0.10 0.68 3.58 -26.73 -0.10 0.58 16 6 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 7 C -0.19 -0.95 9.54 37.16 0.35 -0.59 16 8 O -0.56 -4.39 11.12 -35.23 -0.39 -4.79 16 9 N -0.71 -7.95 3.86 -55.25 -0.21 -8.17 16 10 C 0.56 8.21 7.70 -13.04 -0.10 8.11 16 11 O -0.57 -10.26 15.89 5.17 0.08 -10.18 16 12 C -0.27 -3.96 9.41 -37.51 -0.35 -4.31 16 13 C 0.03 0.47 9.45 -37.19 -0.35 0.11 16 14 C -0.19 -3.43 5.87 -105.03 -0.62 -4.04 16 15 C -0.04 -0.68 9.78 -39.15 -0.38 -1.07 16 16 C -0.24 -5.11 9.14 -39.47 -0.36 -5.47 16 17 C 0.17 3.88 6.66 -38.89 -0.26 3.62 16 18 O -0.16 -4.52 9.74 0.71 0.01 -4.51 16 19 C -0.39 -10.56 9.48 30.91 0.29 -10.27 16 20 H 0.10 2.37 5.18 -52.48 -0.27 2.10 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.85 -24.12 13.67 55.48 0.76 -23.36 16 23 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 27 C -0.20 -4.07 9.97 -39.47 -0.39 -4.47 16 28 C -0.04 -0.77 9.40 -39.15 -0.37 -1.14 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 1.91 9.08 45.56 0.41 2.33 16 38 H 0.40 4.01 7.68 -40.82 -0.31 3.69 16 39 H 0.12 1.56 6.07 -52.48 -0.32 1.24 16 40 H 0.12 1.93 7.52 -52.48 -0.39 1.53 16 41 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.13 2.72 5.62 -52.49 -0.29 2.42 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.12 2.34 8.06 -52.48 -0.42 1.91 16 45 H 0.12 1.72 6.16 -52.49 -0.32 1.40 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -31.98 379.84 -7.41 -39.39 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -5.68 Total: 9.93 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -2.67 Total: -18.77 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.55 Total: -31.53 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.30 Total: -19.47 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.98 -7.41 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492455534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.601 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds