Wall clock time and date at job start Tue Mar 31 2020 12:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47575 * 2 1 4 4 C 1.53001 * 109.47466 * 239.99460 * 2 1 3 5 5 C 1.52998 * 109.47472 * 175.00077 * 4 2 1 6 6 H 1.08997 * 109.47178 * 305.00773 * 5 4 2 7 7 C 1.53003 * 109.47548 * 184.99920 * 5 4 2 8 8 O 1.42908 * 109.46914 * 65.00170 * 5 4 2 9 9 N 1.46502 * 109.46985 * 119.99648 * 2 1 3 10 10 C 1.34779 * 120.00004 * 274.99926 * 9 2 1 11 11 O 1.21718 * 119.99908 * 0.02562 * 10 9 2 12 12 C 1.46255 * 119.99865 * 179.97438 * 10 9 2 13 13 C 1.35018 * 120.00031 * 179.97438 * 12 10 9 14 14 C 1.46960 * 120.00380 * 180.02562 * 13 12 10 15 15 C 1.40026 * 120.10267 * 180.02562 * 14 13 12 16 16 C 1.37594 * 119.89660 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10071 * 0.27233 * 16 15 14 18 18 O 1.35579 * 119.89553 * 179.70771 * 17 16 15 19 19 C 1.34781 * 117.00320 * 354.44312 * 18 17 16 20 20 H 1.08005 * 119.99725 * 5.05569 * 19 18 17 21 21 C 1.38715 * 120.00342 * 185.05925 * 19 18 17 22 22 N 1.31515 * 119.99717 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00159 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47198 * 89.99794 * 23 21 19 25 25 H 1.48504 * 109.46987 * 209.99932 * 23 21 19 26 26 H 1.48498 * 109.46817 * 329.99488 * 23 21 19 27 27 C 1.39173 * 120.20477 * 359.44770 * 17 16 15 28 28 C 1.37597 * 120.09926 * 0.55723 * 27 17 16 29 29 H 1.09005 * 109.46869 * 60.00053 * 1 2 3 30 30 H 1.08995 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47432 * 300.00526 * 1 2 3 32 32 H 1.08998 * 109.47158 * 295.00689 * 4 2 1 33 33 H 1.08995 * 109.46883 * 55.00552 * 4 2 1 34 34 H 1.09000 * 109.46673 * 60.00230 * 7 5 4 35 35 H 1.08997 * 109.47222 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.46849 * 300.00763 * 7 5 4 37 37 H 0.96701 * 113.99610 * 180.02562 * 8 5 4 38 38 H 0.97004 * 120.00347 * 95.00293 * 9 2 1 39 39 H 1.08003 * 120.00046 * 0.02562 * 12 10 9 40 40 H 1.08003 * 119.99920 * 0.02562 * 13 12 10 41 41 H 1.08002 * 120.05214 * 359.95709 * 15 14 13 42 42 H 1.08001 * 119.95149 * 180.02562 * 16 15 14 43 43 H 0.96993 * 119.99812 * 180.02562 * 22 21 19 44 44 H 1.08004 * 119.95204 * 180.27325 * 27 17 16 45 45 H 1.08000 * 120.05069 * 179.74232 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0646 -1.2253 -2.6239 8 8 4.1392 -1.3166 -0.2100 9 7 2.0182 -0.6905 1.1962 10 6 2.1470 -0.0181 2.3572 11 8 1.8571 1.1628 2.4119 12 6 2.6339 -0.7077 3.5515 13 6 2.7634 -0.0339 4.7144 14 6 3.2532 -0.7266 5.9144 15 6 3.3877 -0.0300 7.1217 16 6 3.8462 -0.6829 8.2427 17 6 4.1815 -2.0321 8.1766 18 8 4.6385 -2.6698 9.2823 19 6 4.8534 -1.9158 10.3787 20 1 4.5850 -0.8696 10.3757 21 6 5.4192 -2.4834 11.5109 22 7 5.7455 -3.7575 11.5147 23 14 5.7163 -1.4386 13.0306 24 1 4.5188 -1.4883 13.9073 25 1 6.8929 -1.9630 13.7695 26 1 5.9735 -0.0341 12.6230 27 6 4.0439 -2.7299 6.9804 28 6 3.5863 -2.0853 5.8542 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -1.7716 -1.2055 33 1 1.6055 -0.2619 -2.1369 34 1 3.6265 -0.6889 -3.4656 35 1 5.1509 -1.1480 -2.6699 36 1 3.7723 -2.2743 -2.6697 37 1 5.1055 -1.2900 -0.1867 38 1 2.2490 -1.6317 1.1528 39 1 2.8908 -1.7556 3.5031 40 1 2.5069 1.0141 4.7628 41 1 3.1323 1.0181 7.1727 42 1 3.9500 -0.1466 9.1744 43 1 6.1407 -4.1545 12.3065 44 1 4.3011 -3.7779 6.9348 45 1 3.4838 -2.6266 4.9252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492455534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:14 Heat of formation + Delta-G solvation = -110.563833 kcal Electronic energy + Delta-G solvation = -25343.984358 eV Core-core repulsion = 21519.125657 eV Total energy + Delta-G solvation = -3824.858701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93482 -40.65703 -38.80872 -38.40150 -36.33528 -34.70645 -33.99427 -33.02148 -31.96055 -31.33990 -29.50653 -27.74982 -27.49100 -24.94746 -23.73406 -22.82393 -22.08057 -21.54156 -20.61414 -19.70720 -18.82362 -18.42953 -18.00545 -17.06081 -16.46648 -16.37363 -16.06485 -15.86284 -15.61783 -15.51598 -15.37582 -15.03038 -14.78453 -14.56323 -14.09180 -14.00410 -13.68268 -13.59282 -13.32703 -13.25141 -13.17826 -13.03893 -12.90814 -12.70274 -12.54315 -12.50158 -12.19292 -12.12404 -11.93596 -11.48548 -11.20657 -11.09429 -10.85692 -10.80911 -10.55478 -9.88615 -9.86925 -8.65599 -8.51535 -6.17634 -0.20346 0.59068 1.17632 1.35921 1.46490 1.53187 2.15756 2.41846 2.47299 2.87724 3.18878 3.43037 3.45074 3.64881 3.90375 3.96493 4.04579 4.09723 4.22004 4.32805 4.36894 4.39854 4.44993 4.50504 4.56884 4.67664 4.73350 4.83031 4.93277 4.95718 4.99565 5.04577 5.08880 5.18691 5.20776 5.30053 5.33629 5.35960 5.36730 5.60518 5.64420 5.73976 5.83935 5.98079 6.11442 6.76494 6.92761 6.95542 7.44138 7.70161 8.70578 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027181 B = 0.001984 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.872068 B =14107.738988 C =14662.611517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.062 0.938 4 C -0.115 4.115 5 C 0.099 3.901 6 H 0.045 0.955 7 C -0.180 4.180 8 O -0.578 6.578 9 N -0.692 5.692 10 C 0.549 3.451 11 O -0.603 6.603 12 C -0.239 4.239 13 C 0.008 3.992 14 C -0.168 4.168 15 C -0.042 4.042 16 C -0.248 4.248 17 C 0.129 3.871 18 O -0.220 6.220 19 C -0.417 4.417 20 H 0.105 0.895 21 C -0.020 4.020 22 N -0.914 5.914 23 Si 1.019 2.981 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.253 1.253 27 C -0.206 4.206 28 C -0.039 4.039 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.388 0.612 38 H 0.413 0.587 39 H 0.147 0.853 40 H 0.122 0.878 41 H 0.143 0.857 42 H 0.125 0.875 43 H 0.275 0.725 44 H 0.123 0.877 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 5.547 -26.999 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.080 0.920 4 C -0.153 4.153 5 C 0.040 3.960 6 H 0.063 0.937 7 C -0.237 4.237 8 O -0.385 6.385 9 N -0.342 5.342 10 C 0.340 3.660 11 O -0.488 6.488 12 C -0.259 4.259 13 C -0.012 4.012 14 C -0.168 4.168 15 C -0.060 4.060 16 C -0.267 4.267 17 C 0.077 3.923 18 O -0.125 6.125 19 C -0.492 4.492 20 H 0.122 0.878 21 C -0.218 4.218 22 N -0.551 5.551 23 Si 0.838 3.162 24 H -0.188 1.188 25 H -0.195 1.195 26 H -0.176 1.176 27 C -0.225 4.225 28 C -0.056 4.056 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.237 0.763 38 H 0.250 0.750 39 H 0.164 0.836 40 H 0.140 0.860 41 H 0.161 0.839 42 H 0.143 0.857 43 H 0.084 0.916 44 H 0.141 0.859 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.479 5.827 -26.705 28.090 hybrid contribution 0.994 -0.062 0.930 1.362 sum -5.485 5.765 -25.775 26.975 Atomic orbital electron populations 1.22155 0.94866 1.02649 1.02172 1.20960 0.94098 0.96581 0.84735 0.91955 1.21993 0.93670 1.02366 0.97246 1.21815 0.93505 0.94555 0.86146 0.93697 1.22450 1.01825 1.01981 0.97455 1.86456 1.26314 1.76947 1.48827 1.45751 1.65510 1.14511 1.08417 1.18472 0.76924 0.86009 0.84639 1.90747 1.53870 1.17841 1.86307 1.22798 1.08983 1.01739 0.92409 1.22132 0.89713 0.98780 0.90558 1.18787 1.09902 0.94344 0.93810 1.21307 0.94023 0.99790 0.90894 1.21196 1.10135 0.94702 1.00693 1.20172 0.92002 0.92229 0.87894 1.83886 1.73109 1.37296 1.18208 1.21893 1.42792 0.95007 0.89530 0.87751 1.26619 0.95290 0.97832 1.02078 1.70151 1.40605 1.13214 1.31109 0.84580 0.78592 0.77763 0.75276 1.18774 1.19534 1.17631 1.20411 1.10233 1.00822 0.91054 1.21265 0.93736 0.93360 0.97270 0.89844 0.91417 0.94678 0.89814 0.87003 0.90730 0.92015 0.91925 0.76329 0.74979 0.83592 0.85975 0.83888 0.85729 0.91608 0.85917 0.82481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.48 71.98 0.68 -1.76 16 2 C 0.14 2.33 2.57 44.99 0.12 2.44 16 3 H 0.06 1.33 7.58 -2.39 -0.02 1.31 16 4 C -0.12 -1.13 4.56 30.59 0.14 -0.99 16 5 C 0.10 1.04 3.58 30.59 0.11 1.15 16 6 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 7 C -0.18 -1.29 9.54 71.98 0.69 -0.60 16 8 O -0.58 -7.43 11.12 -148.98 -1.66 -9.08 16 9 N -0.69 -13.42 3.86 -446.92 -1.73 -15.15 16 10 C 0.55 14.69 7.70 86.33 0.66 15.35 16 11 O -0.60 -20.77 15.89 -4.41 -0.07 -20.84 16 12 C -0.24 -6.01 9.41 23.61 0.22 -5.79 16 13 C 0.01 0.23 9.45 23.82 0.23 0.46 16 14 C -0.17 -5.46 5.87 -20.13 -0.12 -5.58 16 15 C -0.04 -1.48 9.78 22.55 0.22 -1.26 16 16 C -0.25 -10.63 9.14 22.34 0.20 -10.43 16 17 C 0.13 6.25 6.66 22.72 0.15 6.41 16 18 O -0.22 -12.87 9.74 -20.36 -0.20 -13.07 16 19 C -0.42 -23.67 9.48 67.93 0.64 -23.02 16 20 H 0.11 5.43 5.18 -2.91 -0.02 5.41 16 21 C -0.02 -1.09 5.49 84.85 0.47 -0.62 16 22 N -0.91 -54.77 13.67 21.62 0.30 -54.48 16 23 Si 1.02 41.88 29.55 68.60 2.03 43.91 16 24 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 25 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 27 C -0.21 -8.41 9.97 22.34 0.22 -8.19 16 28 C -0.04 -1.26 9.40 22.55 0.21 -1.05 16 29 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 35 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.39 2.99 9.08 -74.06 -0.67 2.31 16 38 H 0.41 6.62 7.68 -92.71 -0.71 5.91 16 39 H 0.15 2.96 6.07 -2.91 -0.02 2.94 16 40 H 0.12 3.58 7.52 -2.91 -0.02 3.55 16 41 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 42 H 0.13 5.38 5.62 -2.91 -0.02 5.36 16 43 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 45 H 0.16 3.84 6.16 -2.91 -0.02 3.82 16 Total: -1.00 -74.47 379.84 3.16 -71.32 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.36 Total: 30.87 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 4.85 Total: -33.47 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -1.43 Total: -69.63 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -1.92 Total: -43.00 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -74.47 3.16 -71.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492455534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.249 kcal (2) G-P(sol) polarization free energy of solvation -74.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds