Wall clock time and date at job start Tue Mar 31 2020 12:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46971 * 2 1 4 4 C 1.53000 * 109.47060 * 240.00576 * 2 1 3 5 5 C 1.52998 * 109.47043 * 174.99875 * 4 2 1 6 6 H 1.08999 * 109.47505 * 304.99950 * 5 4 2 7 7 C 1.53004 * 109.47210 * 184.99666 * 5 4 2 8 8 O 1.42907 * 109.47101 * 65.00104 * 5 4 2 9 9 N 1.46500 * 109.47169 * 120.00616 * 2 1 3 10 10 C 1.34775 * 119.99735 * 274.99545 * 9 2 1 11 11 O 1.21722 * 120.00044 * 0.02562 * 10 9 2 12 12 C 1.46254 * 120.00297 * 179.97438 * 10 9 2 13 13 C 1.35013 * 120.00220 * 173.59464 * 12 10 9 14 14 C 1.46963 * 120.00167 * 347.32278 * 13 12 10 15 15 C 1.40021 * 120.09833 * 316.12757 * 14 13 12 16 16 C 1.37601 * 119.89378 * 179.78571 * 15 14 13 17 17 C 1.39173 * 120.10279 * 0.49366 * 16 15 14 18 18 O 1.35571 * 119.89990 * 179.76254 * 17 16 15 19 19 C 1.34780 * 117.00095 * 175.94922 * 18 17 16 20 20 H 1.08003 * 120.00142 * 5.02557 * 19 18 17 21 21 C 1.38719 * 120.00248 * 185.01848 * 19 18 17 22 22 N 1.31504 * 119.99674 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00173 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46887 * 60.00694 * 23 21 19 25 25 H 1.48500 * 109.46839 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47362 * 300.00785 * 23 21 19 27 27 C 1.39182 * 120.20303 * 359.74252 * 17 16 15 28 28 C 1.37593 * 120.09803 * 0.02562 * 27 17 16 29 29 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46915 * 299.99139 * 1 2 3 31 31 H 1.08998 * 109.46802 * 60.00138 * 1 2 3 32 32 H 1.09007 * 109.47309 * 294.99799 * 4 2 1 33 33 H 1.08998 * 109.47406 * 54.99786 * 4 2 1 34 34 H 1.09008 * 109.46937 * 60.00144 * 7 5 4 35 35 H 1.08999 * 109.47098 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.47119 * 300.00521 * 7 5 4 37 37 H 0.96700 * 113.99957 * 60.00082 * 8 5 4 38 38 H 0.96997 * 120.00475 * 95.00295 * 9 2 1 39 39 H 1.08004 * 119.99400 * 353.87616 * 12 10 9 40 40 H 1.08004 * 120.00005 * 167.32745 * 13 12 10 41 41 H 1.08003 * 120.05340 * 0.02562 * 15 14 13 42 42 H 1.08005 * 119.94842 * 180.23411 * 16 15 14 43 43 H 0.96998 * 120.00431 * 179.97438 * 22 21 19 44 44 H 1.07999 * 119.95010 * 180.02562 * 27 17 16 45 45 H 1.08004 * 120.04956 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 1 3.8571 0.4359 -1.2678 7 6 4.0645 -1.2248 -2.6242 8 8 4.1393 -1.3165 -0.2103 9 7 2.0184 -0.6907 1.1961 10 6 2.1472 -0.0184 2.3571 11 8 1.8573 1.1625 2.4119 12 6 2.6342 -0.7080 3.5514 13 6 2.8863 -0.0093 4.6787 14 6 2.9433 1.4586 4.6362 15 6 3.6249 2.1051 3.5979 16 6 3.6718 3.4798 3.5598 17 6 3.0520 4.2273 4.5568 18 8 3.1050 5.5814 4.5178 19 6 2.4150 6.2483 5.4643 20 1 1.9205 5.7047 6.2558 21 6 2.3401 7.6328 5.4220 22 7 2.9419 8.2946 4.4581 23 14 1.3833 8.5569 6.7334 24 1 1.9686 8.2700 8.0676 25 1 1.4561 10.0154 6.4637 26 1 -0.0358 8.1200 6.7111 27 6 2.3776 3.5889 5.5935 28 6 2.3213 2.2149 5.6372 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.7517 -1.7715 -1.2058 33 1 1.6054 -0.2616 -2.1370 34 1 3.6264 -0.6883 -3.4659 35 1 5.1509 -1.1483 -2.6699 36 1 3.7723 -2.2739 -2.6702 37 1 3.9206 -2.2581 -0.1874 38 1 2.2491 -1.6318 1.1525 39 1 2.7964 -1.7756 3.5300 40 1 3.0462 -0.5291 5.6119 41 1 4.1097 1.5258 2.8260 42 1 4.1941 3.9794 2.7572 43 1 2.8893 9.2627 4.4282 44 1 1.8977 4.1730 6.3648 45 1 1.7974 1.7203 6.4418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492455535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:18 Heat of formation + Delta-G solvation = -71.010934 kcal Electronic energy + Delta-G solvation = -26624.450857 eV Core-core repulsion = 22801.307299 eV Total energy + Delta-G solvation = -3823.143558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.84990 -38.82292 -38.07244 -36.46112 -35.14793 -32.94361 -32.27954 -31.98162 -30.46823 -30.03977 -27.83566 -27.06723 -25.38721 -23.57588 -22.10585 -21.72881 -21.28915 -20.56899 -19.14736 -17.85035 -17.17868 -16.72876 -16.58879 -16.31514 -15.27386 -14.90241 -14.63846 -14.50963 -14.31815 -14.03993 -13.81727 -13.45655 -13.38900 -13.18394 -12.88701 -12.87302 -12.61408 -12.49052 -12.30409 -12.07990 -12.02434 -11.76966 -11.63743 -11.26633 -11.20406 -10.95903 -10.91993 -10.61540 -10.57537 -10.36394 -10.21600 -9.38765 -9.28415 -9.07316 -8.75440 -8.62463 -7.84885 -6.78313 -6.40457 -3.96237 1.37021 2.50297 2.78844 3.16707 3.19739 3.20799 3.46933 3.80455 4.01638 4.06736 4.37097 4.61298 4.76956 4.81532 4.99414 5.05644 5.16363 5.24260 5.26062 5.32832 5.36345 5.42895 5.45994 5.52483 5.64170 5.70706 5.73979 5.80920 5.82658 5.94222 6.03771 6.18355 6.32684 6.43986 6.54297 6.68914 6.76107 6.88000 7.11576 7.18553 7.38643 7.44251 7.53899 7.57138 7.86802 8.00246 8.06479 8.73912 9.05273 9.78297 10.77606 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.002851 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.493448 B = 9817.359724 C =10389.843579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.088 0.912 4 C -0.159 4.159 5 C 0.101 3.899 6 H 0.100 0.900 7 C -0.185 4.185 8 O -0.551 6.551 9 N -0.717 5.717 10 C 0.542 3.458 11 O -0.517 6.517 12 C -0.260 4.260 13 C 0.020 3.980 14 C -0.183 4.183 15 C 0.011 3.989 16 C -0.202 4.202 17 C 0.170 3.830 18 O -0.174 6.174 19 C -0.390 4.390 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.250 4.250 28 C -0.044 4.044 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.366 0.634 38 H 0.391 0.609 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.270 0.730 44 H 0.125 0.875 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 -22.434 -9.702 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.106 0.894 4 C -0.197 4.197 5 C 0.042 3.958 6 H 0.118 0.882 7 C -0.243 4.243 8 O -0.355 6.355 9 N -0.370 5.370 10 C 0.332 3.668 11 O -0.394 6.394 12 C -0.281 4.281 13 C 0.001 3.999 14 C -0.184 4.184 15 C -0.008 4.008 16 C -0.222 4.222 17 C 0.116 3.884 18 O -0.077 6.077 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.269 4.269 28 C -0.062 4.062 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.212 0.788 38 H 0.225 0.775 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.181 -20.529 -9.776 22.769 hybrid contribution -0.780 -0.705 0.314 1.097 sum -1.961 -21.234 -9.463 23.330 Atomic orbital electron populations 1.22191 0.95728 1.01553 1.02705 1.20767 0.93442 0.97778 0.83795 0.89402 1.22649 0.96841 1.01519 0.98690 1.21939 0.91057 0.97349 0.85421 0.88220 1.22517 1.02334 1.01186 0.98236 1.86733 1.75624 1.24752 1.48370 1.45875 1.68433 1.13477 1.09249 1.18408 0.78269 0.86851 0.83277 1.90983 1.49300 1.14873 1.84228 1.22615 1.11205 0.99426 0.94846 1.22298 0.87895 0.93515 0.96232 1.18288 1.09120 0.91303 0.99665 1.20471 0.94142 0.92816 0.93361 1.20002 1.08584 0.93013 1.00564 1.19520 0.91751 0.84596 0.92553 1.83908 1.61559 1.12588 1.49607 1.21338 1.30808 0.89293 1.05170 0.88992 1.25307 0.97447 0.95651 0.98144 1.70012 1.40376 1.08303 1.30937 0.85779 0.79600 0.78334 0.79714 1.19473 1.20291 1.19488 1.20943 1.09149 0.94464 1.02382 1.20740 0.96322 0.93264 0.95909 0.92982 0.91696 0.92078 0.91269 0.89681 0.91625 0.91770 0.92515 0.78807 0.77489 0.86400 0.86305 0.87945 0.86939 0.91970 0.85727 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 2 C 0.15 1.55 2.57 -67.93 -0.17 1.38 16 3 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 4 C -0.16 -1.09 4.53 -26.73 -0.12 -1.21 16 5 C 0.10 0.78 3.59 -26.73 -0.10 0.68 16 6 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 7 C -0.19 -1.10 9.53 37.16 0.35 -0.74 16 8 O -0.55 -4.67 11.26 -35.23 -0.40 -5.06 16 9 N -0.72 -7.83 3.86 -55.25 -0.21 -8.04 16 10 C 0.54 8.20 6.76 -13.04 -0.09 8.12 16 11 O -0.52 -10.32 12.00 5.17 0.06 -10.26 16 12 C -0.26 -3.44 9.88 -37.51 -0.37 -3.81 16 13 C 0.02 0.30 9.79 -37.20 -0.36 -0.06 16 14 C -0.18 -3.52 4.49 -105.03 -0.47 -3.99 16 15 C 0.01 0.22 6.67 -39.15 -0.26 -0.04 16 16 C -0.20 -4.81 9.97 -39.47 -0.39 -5.21 16 17 C 0.17 4.46 6.66 -38.88 -0.26 4.20 16 18 O -0.17 -5.23 9.74 0.74 0.01 -5.23 16 19 C -0.39 -11.34 9.48 30.91 0.29 -11.05 16 20 H 0.09 2.48 5.18 -52.48 -0.27 2.20 16 21 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 22 N -0.86 -25.97 13.67 55.48 0.76 -25.21 16 23 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 C -0.25 -5.88 9.15 -39.47 -0.36 -6.24 16 28 C -0.04 -0.89 9.78 -39.15 -0.38 -1.27 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.37 1.64 8.79 45.56 0.40 2.04 16 38 H 0.39 3.08 7.51 -40.82 -0.31 2.77 16 39 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 41 H 0.10 2.00 7.12 -52.48 -0.37 1.63 16 42 H 0.11 2.62 8.06 -52.48 -0.42 2.19 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 44 H 0.13 2.89 5.60 -52.49 -0.29 2.60 16 45 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -35.39 374.85 -7.47 -42.86 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.87 Total: 8.79 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -2.44 Total: -19.58 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.54 Total: -33.25 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.33 Total: -20.55 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.39 -7.47 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492455535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.151 kcal (2) G-P(sol) polarization free energy of solvation -35.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds