Wall clock time and date at job start Tue Mar 31 2020 12:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46971 * 2 1 4 4 C 1.53000 * 109.47060 * 240.00576 * 2 1 3 5 5 C 1.52998 * 109.47043 * 174.99875 * 4 2 1 6 6 H 1.08999 * 109.47505 * 304.99950 * 5 4 2 7 7 C 1.53004 * 109.47210 * 184.99666 * 5 4 2 8 8 O 1.42907 * 109.47101 * 65.00104 * 5 4 2 9 9 N 1.46500 * 109.47169 * 120.00616 * 2 1 3 10 10 C 1.34775 * 119.99735 * 274.99545 * 9 2 1 11 11 O 1.21722 * 120.00044 * 0.02562 * 10 9 2 12 12 C 1.46254 * 120.00297 * 179.97438 * 10 9 2 13 13 C 1.35013 * 120.00220 * 173.59464 * 12 10 9 14 14 C 1.46963 * 120.00167 * 347.32278 * 13 12 10 15 15 C 1.40021 * 120.09833 * 316.12757 * 14 13 12 16 16 C 1.37601 * 119.89378 * 179.78571 * 15 14 13 17 17 C 1.39173 * 120.10279 * 0.49366 * 16 15 14 18 18 O 1.35571 * 119.89990 * 179.76254 * 17 16 15 19 19 C 1.34780 * 117.00095 * 175.94922 * 18 17 16 20 20 H 1.08003 * 120.00142 * 5.02557 * 19 18 17 21 21 C 1.38719 * 120.00248 * 185.01848 * 19 18 17 22 22 N 1.31504 * 119.99674 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00173 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46887 * 60.00694 * 23 21 19 25 25 H 1.48500 * 109.46839 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47362 * 300.00785 * 23 21 19 27 27 C 1.39182 * 120.20303 * 359.74252 * 17 16 15 28 28 C 1.37593 * 120.09803 * 0.02562 * 27 17 16 29 29 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46915 * 299.99139 * 1 2 3 31 31 H 1.08998 * 109.46802 * 60.00138 * 1 2 3 32 32 H 1.09007 * 109.47309 * 294.99799 * 4 2 1 33 33 H 1.08998 * 109.47406 * 54.99786 * 4 2 1 34 34 H 1.09008 * 109.46937 * 60.00144 * 7 5 4 35 35 H 1.08999 * 109.47098 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.47119 * 300.00521 * 7 5 4 37 37 H 0.96700 * 113.99957 * 60.00082 * 8 5 4 38 38 H 0.96997 * 120.00475 * 95.00295 * 9 2 1 39 39 H 1.08004 * 119.99400 * 353.87616 * 12 10 9 40 40 H 1.08004 * 120.00005 * 167.32745 * 13 12 10 41 41 H 1.08003 * 120.05340 * 0.02562 * 15 14 13 42 42 H 1.08005 * 119.94842 * 180.23411 * 16 15 14 43 43 H 0.96998 * 120.00431 * 179.97438 * 22 21 19 44 44 H 1.07999 * 119.95010 * 180.02562 * 27 17 16 45 45 H 1.08004 * 120.04956 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 1 3.8571 0.4359 -1.2678 7 6 4.0645 -1.2248 -2.6242 8 8 4.1393 -1.3165 -0.2103 9 7 2.0184 -0.6907 1.1961 10 6 2.1472 -0.0184 2.3571 11 8 1.8573 1.1625 2.4119 12 6 2.6342 -0.7080 3.5514 13 6 2.8863 -0.0093 4.6787 14 6 2.9433 1.4586 4.6362 15 6 3.6249 2.1051 3.5979 16 6 3.6718 3.4798 3.5598 17 6 3.0520 4.2273 4.5568 18 8 3.1050 5.5814 4.5178 19 6 2.4150 6.2483 5.4643 20 1 1.9205 5.7047 6.2558 21 6 2.3401 7.6328 5.4220 22 7 2.9419 8.2946 4.4581 23 14 1.3833 8.5569 6.7334 24 1 1.9686 8.2700 8.0676 25 1 1.4561 10.0154 6.4637 26 1 -0.0358 8.1200 6.7111 27 6 2.3776 3.5889 5.5935 28 6 2.3213 2.2149 5.6372 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.7517 -1.7715 -1.2058 33 1 1.6054 -0.2616 -2.1370 34 1 3.6264 -0.6883 -3.4659 35 1 5.1509 -1.1483 -2.6699 36 1 3.7723 -2.2739 -2.6702 37 1 3.9206 -2.2581 -0.1874 38 1 2.2491 -1.6318 1.1525 39 1 2.7964 -1.7756 3.5300 40 1 3.0462 -0.5291 5.6119 41 1 4.1097 1.5258 2.8260 42 1 4.1941 3.9794 2.7572 43 1 2.8893 9.2627 4.4282 44 1 1.8977 4.1730 6.3648 45 1 1.7974 1.7203 6.4418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492455535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:17 Heat of formation + Delta-G solvation = -97.178374 kcal Electronic energy + Delta-G solvation = -26625.585562 eV Core-core repulsion = 22801.307299 eV Total energy + Delta-G solvation = -3824.278264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11565 -40.47867 -39.04913 -38.07681 -36.17118 -34.56393 -33.92083 -32.98958 -31.81804 -31.32112 -29.42728 -27.72426 -27.41680 -24.86430 -23.54374 -22.93330 -22.48540 -21.68485 -20.47352 -19.73775 -18.85914 -18.09272 -17.38077 -17.22054 -16.41131 -16.30042 -16.13626 -15.94202 -15.60754 -15.48018 -15.24456 -14.91498 -14.68017 -14.53348 -14.24858 -14.06299 -13.77450 -13.61552 -13.55635 -13.30853 -13.02570 -13.00801 -12.66389 -12.58036 -12.45350 -12.35309 -12.21917 -12.12553 -11.96316 -11.62541 -11.23491 -10.93284 -10.86320 -10.57404 -10.33074 -9.87478 -9.51243 -8.53768 -8.48284 -6.15809 0.04866 0.71767 1.15617 1.32796 1.46933 1.50295 2.17292 2.50854 2.60713 2.87530 3.21591 3.47159 3.52282 3.76942 3.95139 4.04900 4.10026 4.17013 4.18406 4.21690 4.35898 4.45545 4.53223 4.55511 4.62855 4.69163 4.77898 4.80513 4.92893 4.97573 5.04917 5.08556 5.10704 5.24681 5.26096 5.28685 5.30119 5.35665 5.49997 5.68961 5.72797 5.78227 5.88067 6.02313 6.26030 6.88841 6.95246 6.99715 7.62550 7.77792 8.74910 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.002851 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.493448 B = 9817.359724 C =10389.843579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 H 0.044 0.956 4 C -0.144 4.144 5 C 0.102 3.898 6 H 0.066 0.934 7 C -0.177 4.177 8 O -0.571 6.571 9 N -0.694 5.694 10 C 0.525 3.475 11 O -0.576 6.576 12 C -0.224 4.224 13 C -0.006 4.006 14 C -0.153 4.153 15 C 0.013 3.987 16 C -0.222 4.222 17 C 0.126 3.874 18 O -0.232 6.232 19 C -0.417 4.417 20 H 0.103 0.897 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.022 2.978 24 H -0.254 1.254 25 H -0.269 1.269 26 H -0.258 1.258 27 C -0.257 4.257 28 C -0.050 4.050 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.385 0.615 38 H 0.412 0.588 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.274 0.726 44 H 0.121 0.879 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 -27.799 -9.251 29.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.062 0.938 4 C -0.182 4.182 5 C 0.042 3.958 6 H 0.084 0.916 7 C -0.235 4.235 8 O -0.379 6.379 9 N -0.346 5.346 10 C 0.315 3.685 11 O -0.457 6.457 12 C -0.245 4.245 13 C -0.025 4.025 14 C -0.154 4.154 15 C -0.006 4.006 16 C -0.241 4.241 17 C 0.076 3.924 18 O -0.138 6.138 19 C -0.493 4.493 20 H 0.120 0.880 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.841 3.159 24 H -0.178 1.178 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.277 4.277 28 C -0.068 4.068 29 H 0.096 0.904 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.234 0.766 38 H 0.250 0.750 39 H 0.190 0.810 40 H 0.184 0.816 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.083 0.917 44 H 0.139 0.861 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.359 -26.032 -9.358 27.763 hybrid contribution -0.396 0.424 -0.049 0.582 sum -2.755 -25.608 -9.406 27.420 Atomic orbital electron populations 1.22127 0.95260 1.02742 1.01434 1.20805 0.93752 0.96268 0.85343 0.93787 1.22558 0.95938 1.02884 0.96816 1.21833 0.91609 0.95952 0.86358 0.91569 1.22427 1.01608 1.02360 0.97092 1.86685 1.76043 1.26469 1.48657 1.45719 1.66412 1.14269 1.08244 1.19040 0.77989 0.86438 0.84991 1.90990 1.51874 1.17547 1.85314 1.23113 1.07007 1.01835 0.92501 1.22543 0.90509 0.90450 0.98993 1.18865 1.04964 0.94466 0.97108 1.20631 0.94243 0.91428 0.94269 1.20165 1.09121 0.94584 1.00235 1.19971 0.93986 0.83952 0.94521 1.83876 1.64164 1.14454 1.51303 1.21863 1.31523 0.90189 1.05732 0.88021 1.26692 0.98391 0.96198 1.00872 1.70172 1.43228 1.08692 1.33906 0.84610 0.78079 0.76685 0.76556 1.17774 1.19377 1.18273 1.21092 1.08811 0.96228 1.01530 1.21189 0.96257 0.91862 0.97479 0.90382 0.95465 0.90976 0.88023 0.88522 0.91104 0.92829 0.90366 0.76561 0.75036 0.80997 0.81568 0.86746 0.88369 0.91747 0.86141 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.48 71.98 0.68 -2.34 16 2 C 0.14 2.84 2.57 44.99 0.12 2.96 16 3 H 0.04 1.28 7.58 -2.39 -0.02 1.26 16 4 C -0.14 -1.55 4.53 30.59 0.14 -1.41 16 5 C 0.10 1.39 3.59 30.60 0.11 1.50 16 6 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 7 C -0.18 -1.65 9.53 71.98 0.69 -0.97 16 8 O -0.57 -8.06 11.26 -148.98 -1.68 -9.74 16 9 N -0.69 -13.10 3.86 -446.91 -1.73 -14.83 16 10 C 0.53 14.63 6.76 86.33 0.58 15.21 16 11 O -0.58 -23.09 12.00 -4.42 -0.05 -23.15 16 12 C -0.22 -4.74 9.88 23.61 0.23 -4.51 16 13 C -0.01 -0.14 9.79 23.82 0.23 0.09 16 14 C -0.15 -5.64 4.49 -20.13 -0.09 -5.73 16 15 C 0.01 0.54 6.67 22.55 0.15 0.69 16 16 C -0.22 -11.37 9.97 22.34 0.22 -11.15 16 17 C 0.13 7.14 6.66 22.72 0.15 7.29 16 18 O -0.23 -15.24 9.74 -20.27 -0.20 -15.44 16 19 C -0.42 -26.01 9.48 67.93 0.64 -25.37 16 20 H 0.10 5.82 5.18 -2.91 -0.02 5.80 16 21 C -0.02 -1.46 5.49 84.86 0.47 -0.99 16 22 N -0.92 -59.51 13.67 21.62 0.30 -59.21 16 23 Si 1.02 44.97 29.55 68.60 2.03 47.00 16 24 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 27 C -0.26 -12.58 9.15 22.34 0.20 -12.37 16 28 C -0.05 -1.95 9.78 22.55 0.22 -1.73 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.39 1.73 8.79 -74.06 -0.65 1.08 16 38 H 0.41 4.42 7.51 -92.71 -0.70 3.72 16 39 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.11 4.49 7.12 -2.91 -0.02 4.47 16 42 H 0.10 5.11 8.06 -2.91 -0.02 5.08 16 43 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 44 H 0.12 5.85 5.60 -2.91 -0.02 5.83 16 45 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -88.78 374.85 3.08 -85.69 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.34 Total: 28.51 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 4.75 Total: -38.84 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -1.43 Total: -74.04 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -1.93 Total: -48.33 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -88.78 3.08 -85.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492455535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.485 kcal (2) G-P(sol) polarization free energy of solvation -88.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds