Wall clock time and date at job start Tue Mar 31 2020 12:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46951 * 2 1 4 4 N 1.46495 * 109.47190 * 120.00630 * 2 1 3 5 5 C 1.46498 * 119.99824 * 305.80931 * 4 2 1 6 6 C 1.50703 * 109.47397 * 270.00114 * 5 4 2 7 7 H 1.08003 * 119.99714 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00360 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99942 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99787 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47493 * 89.99628 * 10 8 6 12 12 H 1.48500 * 109.46682 * 209.99595 * 10 8 6 13 13 H 1.48503 * 109.46973 * 329.99310 * 10 8 6 14 14 C 1.34776 * 120.00009 * 125.81128 * 4 2 1 15 15 O 1.21286 * 119.99926 * 184.10260 * 14 4 2 16 16 C 1.50698 * 120.00127 * 4.10245 * 14 4 2 17 17 H 1.08996 * 109.70443 * 24.97796 * 16 14 4 18 18 O 1.43170 * 109.70718 * 145.60132 * 16 14 4 19 19 C 1.36109 * 116.71610 * 73.51316 * 18 16 14 20 20 C 1.38699 * 119.40271 * 197.17750 * 19 18 16 21 21 C 1.38200 * 120.06887 * 180.20823 * 20 19 18 22 22 C 1.38254 * 120.10993 * 359.94168 * 21 20 19 23 23 C 1.38193 * 120.11621 * 359.97438 * 22 21 20 24 24 C 1.38701 * 120.06443 * 0.02562 * 23 22 21 25 25 O 1.36196 * 119.37071 * 180.27546 * 24 23 22 26 26 C 1.43179 * 116.63114 * 197.11919 * 25 24 23 27 27 H 1.09001 * 109.71450 * 73.45266 * 26 25 24 28 28 C 1.53007 * 109.70815 * 194.03754 * 26 25 24 29 29 H 1.08994 * 109.47561 * 306.00308 * 1 2 3 30 30 H 1.09005 * 109.47207 * 65.99928 * 1 2 3 31 31 H 1.08994 * 109.47143 * 185.99736 * 1 2 3 32 32 H 1.09008 * 109.47221 * 240.00889 * 2 1 3 33 33 H 1.09006 * 109.46784 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47428 * 300.00121 * 3 2 1 35 35 H 1.09008 * 109.46433 * 60.00406 * 3 2 1 36 36 H 1.09001 * 109.47501 * 29.99980 * 5 4 2 37 37 H 1.08998 * 109.47411 * 149.99943 * 5 4 2 38 38 H 0.97004 * 120.00094 * 179.97438 * 9 8 6 39 39 H 1.07997 * 119.96709 * 0.16554 * 20 19 18 40 40 H 1.08001 * 119.94355 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.94023 * 179.97438 * 22 21 20 42 42 H 1.07995 * 119.96739 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47437 * 173.72365 * 28 26 25 44 44 H 1.09002 * 109.47026 * 293.72312 * 28 26 25 45 45 H 1.09000 * 109.47105 * 53.72449 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 1.5626 -0.2688 2.5229 6 6 2.4927 0.7879 3.0610 7 1 3.3389 1.1124 2.4736 8 6 2.2633 1.3404 4.3033 9 7 3.0753 2.2621 4.7730 10 14 0.8002 0.7786 5.3196 11 1 1.2028 -0.3649 6.1772 12 1 0.3328 1.8986 6.1754 13 1 -0.2983 0.3556 4.4142 14 6 2.8868 -1.7143 1.0757 15 8 3.2336 -2.3341 2.0589 16 6 3.4271 -2.0887 -0.2804 17 1 3.3900 -1.2235 -0.9423 18 8 4.7789 -2.5426 -0.1530 19 6 4.9613 -3.7764 0.3920 20 6 6.2135 -4.1305 0.8719 21 6 6.4152 -5.3813 1.4240 22 6 5.3695 -6.2824 1.5007 23 6 4.1189 -5.9354 1.0259 24 6 3.9098 -4.6817 0.4706 25 8 2.6702 -4.3525 0.0123 26 6 2.5907 -3.2307 -0.8739 27 1 2.9852 -3.5060 -1.8520 28 6 1.1336 -2.7847 -1.0122 29 1 -0.3634 0.6040 0.8313 30 1 -0.3634 0.4180 -0.9389 31 1 -0.3633 -1.0220 0.1074 32 1 1.8934 -0.5137 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 0.5543 0.1385 2.4483 37 1 1.5591 -1.1264 3.1956 38 1 2.9137 2.6511 5.6468 39 1 7.0320 -3.4283 0.8135 40 1 7.3912 -5.6550 1.7968 41 1 5.5302 -7.2593 1.9323 42 1 3.3039 -6.6413 1.0866 43 1 1.0888 -1.8656 -1.5964 44 1 0.5614 -3.5637 -1.5161 45 1 0.7125 -2.6071 -0.0226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560828039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:16 Heat of formation + Delta-G solvation = -64.540780 kcal Electronic energy + Delta-G solvation = -28915.296410 eV Core-core repulsion = 25092.433418 eV Total energy + Delta-G solvation = -3822.862991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59795 -39.20493 -37.45848 -37.17038 -36.10366 -33.24730 -32.50214 -31.14556 -30.55663 -28.98847 -28.61122 -27.12689 -26.47050 -23.72082 -22.83476 -22.50985 -21.79645 -20.56223 -18.83175 -18.27750 -17.74929 -16.93063 -16.71487 -16.34769 -15.60477 -15.13046 -14.88859 -14.68860 -14.33885 -14.05345 -13.91339 -13.78524 -13.67161 -13.35070 -12.99832 -12.75540 -12.65860 -12.52921 -12.36835 -11.94013 -11.87740 -11.79036 -11.72860 -11.44888 -11.42773 -11.07019 -10.96782 -10.89083 -10.54098 -10.46270 -10.19275 -10.13438 -9.50886 -9.17921 -8.59484 -8.43912 -7.81334 -7.78216 -6.09698 -4.07731 1.47621 1.51803 2.85066 3.03099 3.26921 3.32701 3.35897 3.49001 3.58702 3.92410 4.22347 4.38047 4.55390 4.64259 4.77338 4.91339 4.96618 5.08416 5.13071 5.23366 5.26933 5.35740 5.41292 5.46023 5.52825 5.55537 5.64211 5.82164 5.88837 5.99852 6.03890 6.12916 6.24615 6.27264 6.36493 6.43234 6.60387 6.68415 6.78617 6.89896 6.93107 7.02184 7.25716 7.55404 7.59371 8.10729 8.44622 8.79019 8.94884 9.50384 11.03351 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.005141 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.466254 B = 5444.671433 C = 6395.033991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.126 3.874 3 C -0.162 4.162 4 N -0.580 5.580 5 C 0.215 3.785 6 C -0.524 4.524 7 H 0.077 0.923 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.496 3.504 15 O -0.514 6.514 16 C 0.029 3.971 17 H 0.143 0.857 18 O -0.285 6.285 19 C 0.069 3.931 20 C -0.111 4.111 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.119 4.119 24 C 0.072 3.928 25 O -0.298 6.298 26 C 0.065 3.935 27 H 0.091 0.909 28 C -0.159 4.159 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -11.460 -15.072 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.022 3.978 3 C -0.220 4.220 4 N -0.313 5.313 5 C 0.095 3.905 6 C -0.563 4.563 7 H 0.095 0.905 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.699 3.301 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.280 3.720 15 O -0.389 6.389 16 C -0.031 4.031 17 H 0.160 0.840 18 O -0.198 6.198 19 C 0.024 3.976 20 C -0.130 4.130 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.137 4.137 24 C 0.027 3.973 25 O -0.213 6.213 26 C 0.008 3.992 27 H 0.109 0.891 28 C -0.215 4.215 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.584 -11.617 -14.389 18.561 hybrid contribution -0.720 0.188 0.684 1.010 sum -2.304 -11.429 -13.705 17.993 Atomic orbital electron populations 1.22277 0.94987 1.02546 1.02664 1.21267 0.94606 0.94448 0.87523 1.22214 1.01668 0.95314 1.02816 1.48001 1.43794 1.31162 1.08365 1.19674 0.95514 0.96103 0.79186 1.21319 1.12219 1.19913 1.02822 0.90493 1.24835 0.96255 0.94698 0.97126 1.69889 1.37290 1.27460 1.18805 0.86914 0.83438 0.78698 0.81024 1.19990 1.21081 1.19113 1.20308 0.80408 0.81366 0.89919 1.90729 1.57462 1.51928 1.38774 1.23458 0.82913 0.98743 0.98019 0.83958 1.86390 1.25470 1.30867 1.77090 1.18813 0.94867 0.84206 0.99709 1.20396 0.95224 0.97719 0.99672 1.20821 0.99389 0.93154 1.00529 1.20806 0.92105 0.99949 1.01009 1.20333 0.98047 0.93617 1.01739 1.18806 0.84091 0.94021 1.00410 1.86316 1.25828 1.47437 1.61729 1.23016 0.98510 0.85175 0.92541 0.89107 1.22202 0.92571 1.02257 1.04507 0.91161 0.91743 0.92212 0.90595 0.92529 0.92918 0.89614 0.94802 0.94686 0.92592 0.85061 0.85395 0.85474 0.85274 0.89324 0.90568 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 8.20 37.16 0.30 -1.79 16 2 C 0.13 1.85 1.91 -67.93 -0.13 1.72 16 3 C -0.16 -2.54 8.63 37.16 0.32 -2.22 16 4 N -0.58 -11.53 2.12 -167.47 -0.35 -11.89 16 5 C 0.22 5.15 3.84 -5.19 -0.02 5.13 16 6 C -0.52 -14.68 8.41 -34.44 -0.29 -14.97 16 7 H 0.08 2.36 7.83 -52.48 -0.41 1.95 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 10 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 11 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.15 6.54 56.52 0.37 -5.79 16 14 C 0.50 10.35 5.61 -10.99 -0.06 10.29 16 15 O -0.51 -13.16 14.38 -14.14 -0.20 -13.36 16 16 C 0.03 0.47 2.88 -27.63 -0.08 0.39 16 17 H 0.14 1.86 6.07 -51.93 -0.31 1.55 16 18 O -0.28 -5.17 10.12 -45.60 -0.46 -5.63 16 19 C 0.07 1.23 5.38 -39.14 -0.21 1.02 16 20 C -0.11 -1.76 9.96 -39.43 -0.39 -2.16 16 21 C -0.12 -1.61 10.04 -39.59 -0.40 -2.01 16 22 C -0.12 -1.57 10.04 -39.59 -0.40 -1.97 16 23 C -0.12 -1.77 9.96 -39.43 -0.39 -2.16 16 24 C 0.07 1.24 5.64 -39.14 -0.22 1.02 16 25 O -0.30 -5.00 9.65 -36.75 -0.35 -5.35 16 26 C 0.07 0.88 3.34 -26.47 -0.09 0.79 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 28 C -0.16 -1.72 7.44 37.16 0.28 -1.45 16 29 H 0.07 1.01 6.81 -51.93 -0.35 0.66 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.72 6.14 -51.93 -0.32 0.40 16 32 H 0.08 0.88 3.32 -51.92 -0.17 0.71 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.63 6.93 -51.92 -0.36 1.27 16 36 H 0.03 0.77 5.33 -51.93 -0.28 0.49 16 37 H 0.04 0.93 6.80 -51.93 -0.35 0.57 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 43 H 0.09 0.74 5.74 -51.93 -0.30 0.44 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.08 5.58 -51.93 -0.29 0.79 16 LS Contribution 347.01 15.07 5.23 5.23 Total: -1.00 -35.60 347.01 -8.04 -43.64 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.12 Total: 3.46 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.88 Total: -6.34 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.42 Total: -38.53 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.02 Total: -24.35 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.60 -8.04 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560828039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.905 kcal (2) G-P(sol) polarization free energy of solvation -35.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds