Wall clock time and date at job start Tue Mar 31 2020 12:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46951 * 2 1 4 4 N 1.46495 * 109.47190 * 120.00630 * 2 1 3 5 5 C 1.46498 * 119.99824 * 305.80931 * 4 2 1 6 6 C 1.50703 * 109.47397 * 270.00114 * 5 4 2 7 7 H 1.08003 * 119.99714 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00360 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99942 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99787 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47493 * 89.99628 * 10 8 6 12 12 H 1.48500 * 109.46682 * 209.99595 * 10 8 6 13 13 H 1.48503 * 109.46973 * 329.99310 * 10 8 6 14 14 C 1.34776 * 120.00009 * 125.81128 * 4 2 1 15 15 O 1.21286 * 119.99926 * 184.10260 * 14 4 2 16 16 C 1.50698 * 120.00127 * 4.10245 * 14 4 2 17 17 H 1.08996 * 109.70443 * 24.97796 * 16 14 4 18 18 O 1.43170 * 109.70718 * 145.60132 * 16 14 4 19 19 C 1.36109 * 116.71610 * 73.51316 * 18 16 14 20 20 C 1.38699 * 119.40271 * 197.17750 * 19 18 16 21 21 C 1.38200 * 120.06887 * 180.20823 * 20 19 18 22 22 C 1.38254 * 120.10993 * 359.94168 * 21 20 19 23 23 C 1.38193 * 120.11621 * 359.97438 * 22 21 20 24 24 C 1.38701 * 120.06443 * 0.02562 * 23 22 21 25 25 O 1.36196 * 119.37071 * 180.27546 * 24 23 22 26 26 C 1.43179 * 116.63114 * 197.11919 * 25 24 23 27 27 H 1.09001 * 109.71450 * 73.45266 * 26 25 24 28 28 C 1.53007 * 109.70815 * 194.03754 * 26 25 24 29 29 H 1.08994 * 109.47561 * 306.00308 * 1 2 3 30 30 H 1.09005 * 109.47207 * 65.99928 * 1 2 3 31 31 H 1.08994 * 109.47143 * 185.99736 * 1 2 3 32 32 H 1.09008 * 109.47221 * 240.00889 * 2 1 3 33 33 H 1.09006 * 109.46784 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47428 * 300.00121 * 3 2 1 35 35 H 1.09008 * 109.46433 * 60.00406 * 3 2 1 36 36 H 1.09001 * 109.47501 * 29.99980 * 5 4 2 37 37 H 1.08998 * 109.47411 * 149.99943 * 5 4 2 38 38 H 0.97004 * 120.00094 * 179.97438 * 9 8 6 39 39 H 1.07997 * 119.96709 * 0.16554 * 20 19 18 40 40 H 1.08001 * 119.94355 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.94023 * 179.97438 * 22 21 20 42 42 H 1.07995 * 119.96739 * 179.97438 * 23 22 21 43 43 H 1.08995 * 109.47437 * 173.72365 * 28 26 25 44 44 H 1.09002 * 109.47026 * 293.72312 * 28 26 25 45 45 H 1.09000 * 109.47105 * 53.72449 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 1.5626 -0.2688 2.5229 6 6 2.4927 0.7879 3.0610 7 1 3.3389 1.1124 2.4736 8 6 2.2633 1.3404 4.3033 9 7 3.0753 2.2621 4.7730 10 14 0.8002 0.7786 5.3196 11 1 1.2028 -0.3649 6.1772 12 1 0.3328 1.8986 6.1754 13 1 -0.2983 0.3556 4.4142 14 6 2.8868 -1.7143 1.0757 15 8 3.2336 -2.3341 2.0589 16 6 3.4271 -2.0887 -0.2804 17 1 3.3900 -1.2235 -0.9423 18 8 4.7789 -2.5426 -0.1530 19 6 4.9613 -3.7764 0.3920 20 6 6.2135 -4.1305 0.8719 21 6 6.4152 -5.3813 1.4240 22 6 5.3695 -6.2824 1.5007 23 6 4.1189 -5.9354 1.0259 24 6 3.9098 -4.6817 0.4706 25 8 2.6702 -4.3525 0.0123 26 6 2.5907 -3.2307 -0.8739 27 1 2.9852 -3.5060 -1.8520 28 6 1.1336 -2.7847 -1.0122 29 1 -0.3634 0.6040 0.8313 30 1 -0.3634 0.4180 -0.9389 31 1 -0.3633 -1.0220 0.1074 32 1 1.8934 -0.5137 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 0.5543 0.1385 2.4483 37 1 1.5591 -1.1264 3.1956 38 1 2.9137 2.6511 5.6468 39 1 7.0320 -3.4283 0.8135 40 1 7.3912 -5.6550 1.7968 41 1 5.5302 -7.2593 1.9323 42 1 3.3039 -6.6413 1.0866 43 1 1.0888 -1.8656 -1.5964 44 1 0.5614 -3.5637 -1.5161 45 1 0.7125 -2.6071 -0.0226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560828039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:15 Heat of formation + Delta-G solvation = -88.013255 kcal Electronic energy + Delta-G solvation = -28916.314253 eV Core-core repulsion = 25092.433418 eV Total energy + Delta-G solvation = -3823.880834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.84035 -40.63806 -38.60499 -38.42095 -37.64571 -35.05324 -33.94471 -32.68618 -31.71278 -30.33793 -30.08176 -28.47681 -27.68046 -25.03398 -24.41760 -23.65459 -23.20271 -21.90667 -20.05483 -19.55056 -19.13861 -19.09334 -17.95517 -17.62189 -17.02214 -16.58931 -16.21592 -16.11313 -15.75843 -15.44109 -15.24234 -15.03083 -14.84599 -14.77381 -14.53068 -14.20793 -13.96650 -13.74872 -13.60304 -13.45390 -13.29248 -12.95256 -12.84789 -12.81400 -12.70057 -12.52183 -12.41132 -12.29182 -12.06113 -11.90078 -11.77335 -11.58752 -11.33850 -10.83752 -10.73751 -9.60923 -9.50002 -8.99199 -8.34506 -6.37312 0.31697 0.38253 1.27164 1.32059 1.39100 1.41422 1.85567 2.15124 2.26416 2.27780 2.77930 2.99025 3.06116 3.29196 3.57139 3.63291 3.84174 3.93527 4.00249 4.13463 4.21181 4.24962 4.31436 4.42650 4.49977 4.63185 4.68157 4.74470 4.85164 4.87096 4.87913 4.91429 5.02128 5.05113 5.10919 5.20709 5.23105 5.40891 5.44154 5.51005 5.56083 5.60474 5.73037 5.86398 6.22607 6.37408 6.55898 6.63771 7.14987 7.29043 8.82125 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.005141 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.466254 B = 5444.671433 C = 6395.033991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 C -0.158 4.158 4 N -0.581 5.581 5 C 0.227 3.773 6 C -0.521 4.521 7 H 0.033 0.967 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.938 3.062 11 H -0.283 1.283 12 H -0.274 1.274 13 H -0.237 1.237 14 C 0.485 3.515 15 O -0.574 6.574 16 C 0.031 3.969 17 H 0.174 0.826 18 O -0.304 6.304 19 C 0.034 3.966 20 C -0.133 4.133 21 C -0.119 4.119 22 C -0.113 4.113 23 C -0.133 4.133 24 C 0.050 3.950 25 O -0.316 6.316 26 C 0.063 3.937 27 H 0.122 0.878 28 C -0.155 4.155 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.032 0.968 34 H 0.097 0.903 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.008 0.992 38 H 0.267 0.733 39 H 0.134 0.866 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.146 0.854 43 H 0.120 0.880 44 H 0.100 0.900 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 -13.064 -17.242 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 C -0.216 4.216 4 N -0.313 5.313 5 C 0.105 3.895 6 C -0.560 4.560 7 H 0.051 0.949 8 C -0.185 4.185 9 N -0.585 5.585 10 Si 0.762 3.238 11 H -0.209 1.209 12 H -0.199 1.199 13 H -0.160 1.160 14 C 0.272 3.728 15 O -0.453 6.453 16 C -0.029 4.029 17 H 0.190 0.810 18 O -0.217 6.217 19 C -0.010 4.010 20 C -0.152 4.152 21 C -0.137 4.137 22 C -0.131 4.131 23 C -0.151 4.151 24 C 0.005 3.995 25 O -0.231 6.231 26 C 0.006 3.994 27 H 0.140 0.860 28 C -0.212 4.212 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.051 0.949 34 H 0.116 0.884 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.027 0.973 38 H 0.076 0.924 39 H 0.152 0.848 40 H 0.179 0.821 41 H 0.183 0.817 42 H 0.163 0.837 43 H 0.138 0.862 44 H 0.118 0.882 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.541 -13.205 -16.622 21.522 hybrid contribution 0.004 0.689 1.322 1.491 sum -3.536 -12.516 -15.300 20.081 Atomic orbital electron populations 1.22281 0.92592 1.03092 1.04105 1.21730 0.96536 0.93519 0.86661 1.22161 1.00139 0.96251 1.03012 1.48095 1.43569 1.31190 1.08468 1.19275 0.95496 0.93575 0.81168 1.21487 1.11464 1.20487 1.02553 0.94897 1.25752 0.99514 0.94756 0.98509 1.70040 1.39682 1.29199 1.19532 0.85855 0.80463 0.78025 0.79479 1.20894 1.19884 1.16048 1.21244 0.79534 0.80639 0.91348 1.90680 1.59380 1.54024 1.41250 1.23658 0.82797 1.01040 0.95390 0.80957 1.86344 1.26509 1.31536 1.77353 1.19184 0.95996 0.84378 1.01472 1.20752 0.94981 0.99145 1.00324 1.21266 1.01125 0.92093 0.99224 1.21301 0.91089 1.01308 0.99396 1.20760 0.99513 0.93346 1.01497 1.19139 0.84169 0.94867 1.01313 1.86273 1.25808 1.48468 1.62536 1.23417 0.99884 0.83226 0.92859 0.86048 1.22296 0.90630 1.04512 1.03742 0.93373 0.87433 0.91337 0.86685 0.94901 0.88390 0.93617 0.92682 0.97348 0.92424 0.84804 0.82088 0.81684 0.83653 0.86218 0.88164 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.20 71.98 0.59 -2.95 16 2 C 0.12 3.21 1.91 44.99 0.09 3.30 16 3 C -0.16 -4.81 8.63 71.98 0.62 -4.19 16 4 N -0.58 -23.25 2.12 -802.14 -1.70 -24.95 16 5 C 0.23 11.09 3.84 85.63 0.33 11.42 16 6 C -0.52 -30.57 8.41 25.60 0.22 -30.35 16 7 H 0.03 2.16 7.83 -2.91 -0.02 2.14 16 8 C 0.01 0.75 5.47 84.66 0.46 1.21 16 9 N -0.94 -60.21 13.96 21.45 0.30 -59.91 16 10 Si 0.94 45.23 27.47 68.60 1.88 47.12 16 11 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 14 C 0.49 20.69 5.61 87.66 0.49 21.18 16 15 O -0.57 -30.80 14.38 15.78 0.23 -30.58 16 16 C 0.03 0.99 2.88 30.01 0.09 1.07 16 17 H 0.17 4.15 6.07 -2.39 -0.01 4.13 16 18 O -0.30 -11.25 10.12 -70.40 -0.71 -11.97 16 19 C 0.03 1.24 5.38 22.56 0.12 1.37 16 20 C -0.13 -4.29 9.96 22.37 0.22 -4.07 16 21 C -0.12 -3.04 10.04 22.26 0.22 -2.81 16 22 C -0.11 -2.73 10.04 22.26 0.22 -2.51 16 23 C -0.13 -3.85 9.96 22.37 0.22 -3.63 16 24 C 0.05 1.74 5.64 22.56 0.13 1.86 16 25 O -0.32 -10.39 9.65 -80.11 -0.77 -11.16 16 26 C 0.06 1.58 3.34 30.76 0.10 1.68 16 27 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 28 C -0.16 -2.84 7.44 71.98 0.54 -2.30 16 29 H 0.05 1.27 6.81 -2.39 -0.02 1.26 16 30 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.07 1.40 6.14 -2.39 -0.01 1.39 16 32 H 0.12 2.23 3.32 -2.38 -0.01 2.23 16 33 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.76 6.93 -2.38 -0.02 1.74 16 36 H 0.06 2.46 5.33 -2.39 -0.01 2.45 16 37 H 0.01 0.46 6.80 -2.39 -0.02 0.44 16 38 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 40 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 43 H 0.12 1.36 5.74 -2.39 -0.01 1.35 16 44 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.05 1.32 5.58 -2.39 -0.01 1.31 16 Total: -1.00 -85.94 347.01 4.84 -81.09 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.95 Total: 20.06 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 4.66 Total: -9.72 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -1.40 Total: -84.86 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -1.26 Total: -53.70 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.12 kcal Total: -85.94 4.84 -81.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560828039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.919 kcal (2) G-P(sol) polarization free energy of solvation -85.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds