Wall clock time and date at job start Tue Mar 31 2020 12:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46834 * 2 1 4 4 C 1.52998 * 109.46834 * 119.99995 * 2 1 3 5 5 C 1.52998 * 109.47061 * 185.69529 * 4 2 1 6 6 H 1.09004 * 110.75164 * 55.16045 * 5 4 2 7 7 C 1.55302 * 110.85185 * 178.85562 * 5 4 2 8 8 C 1.54943 * 100.94604 * 152.32446 * 7 5 4 9 9 O 1.43648 * 105.13637 * 323.55436 * 8 7 5 10 10 C 1.43239 * 109.96820 * 24.42873 * 9 8 7 11 11 N 1.46499 * 109.46992 * 239.99762 * 2 1 3 12 12 S 1.65601 * 120.00052 * 93.05003 * 11 2 1 13 13 O 1.42098 * 104.27763 * 178.78313 * 12 11 2 14 14 O 1.42099 * 104.27262 * 306.64071 * 12 11 2 15 15 C 1.81397 * 104.44919 * 62.70930 * 12 11 2 16 16 C 1.53001 * 109.47263 * 181.01764 * 15 12 11 17 17 C 1.53005 * 109.46870 * 300.00167 * 16 15 12 18 18 C 1.52997 * 109.46818 * 60.00167 * 16 15 12 19 19 C 1.50699 * 109.47318 * 180.02562 * 16 15 12 20 20 H 1.08004 * 119.99725 * 358.40565 * 19 16 15 21 21 C 1.37868 * 120.00133 * 178.40801 * 19 16 15 22 22 N 1.31517 * 120.00192 * 2.70751 * 21 19 16 23 23 Si 1.86803 * 120.00211 * 182.70690 * 21 19 16 24 24 H 1.48495 * 109.47007 * 94.99299 * 23 21 19 25 25 H 1.48504 * 109.47074 * 214.99229 * 23 21 19 26 26 H 1.48500 * 109.46831 * 334.99554 * 23 21 19 27 27 H 1.09010 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47363 * 299.99738 * 1 2 3 29 29 H 1.08997 * 109.47360 * 60.00561 * 1 2 3 30 30 H 1.09004 * 109.47605 * 305.69500 * 4 2 1 31 31 H 1.09004 * 109.47641 * 65.69849 * 4 2 1 32 32 H 1.09001 * 111.12713 * 270.24770 * 7 5 4 33 33 H 1.09004 * 111.12562 * 34.40249 * 7 5 4 34 34 H 1.09001 * 110.31159 * 204.64112 * 8 7 5 35 35 H 1.09000 * 110.31116 * 82.47190 * 8 7 5 36 36 H 1.08996 * 109.83114 * 238.77345 * 10 9 8 37 37 H 1.09002 * 109.83539 * 117.80141 * 10 9 8 38 38 H 0.97009 * 119.99930 * 273.05238 * 11 2 1 39 39 H 1.08996 * 109.47609 * 301.02131 * 15 12 11 40 40 H 1.08999 * 109.46868 * 61.02086 * 15 12 11 41 41 H 1.08998 * 109.46711 * 66.60173 * 17 16 15 42 42 H 1.09003 * 109.46779 * 186.59861 * 17 16 15 43 43 H 1.08993 * 109.47371 * 306.60122 * 17 16 15 44 44 H 1.08994 * 109.47292 * 60.00070 * 18 16 15 45 45 H 1.09002 * 109.46605 * 180.02562 * 18 16 15 46 46 H 1.09005 * 109.47420 * 299.99981 * 18 16 15 47 47 H 0.96999 * 120.00597 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5632 -0.5985 1.3229 6 1 3.8686 0.4473 1.2873 7 6 4.1131 -1.2963 2.5967 8 6 5.5370 -1.6868 2.1269 9 8 5.3899 -2.0477 0.7443 10 6 4.2349 -1.4058 0.1913 11 7 2.0183 -0.6907 -1.1961 12 16 2.3663 0.1719 -2.5663 13 8 2.8303 -0.8056 -3.4874 14 8 1.1829 0.9160 -2.8218 15 6 3.7188 1.2762 -2.0747 16 6 4.1178 2.1541 -3.2625 17 6 4.5792 1.2665 -4.4203 18 6 2.9147 2.9880 -3.7073 19 6 5.2419 3.0710 -2.8543 20 1 5.6153 3.0497 -1.8411 21 6 5.7936 3.9372 -3.7742 22 7 5.3039 4.0013 -4.9931 23 14 7.2367 5.0198 -3.2893 24 1 8.5063 4.3569 -3.6811 25 1 7.1277 6.3291 -3.9815 26 1 7.2230 5.2339 -1.8199 27 1 -0.3634 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.5957 -0.2697 2.1364 31 1 1.7623 -1.7742 1.1998 32 1 4.1529 -0.6041 3.4378 33 1 3.5253 -2.1800 2.8453 34 1 5.9057 -2.5359 2.7023 35 1 6.2142 -0.8386 2.2265 36 1 3.5418 -2.1559 -0.1894 37 1 4.5345 -0.7350 -0.6139 38 1 2.1378 -1.6533 -1.1856 39 1 3.3902 1.9084 -1.2499 40 1 4.5759 0.6821 -1.7579 41 1 3.7345 0.6870 -4.7927 42 1 4.9732 1.8910 -5.2222 43 1 5.3586 0.5894 -4.0708 44 1 2.5860 3.6202 -2.8825 45 1 3.1989 3.6130 -4.5538 46 1 2.1019 2.3244 -4.0027 47 1 5.6918 4.6110 -5.6403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590749815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:40 Heat of formation + Delta-G solvation = -130.103108 kcal Electronic energy + Delta-G solvation = -27513.133793 eV Core-core repulsion = 23822.871757 eV Total energy + Delta-G solvation = -3690.262036 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.79104 -37.12391 -36.42685 -36.28555 -35.28763 -32.88631 -31.68748 -30.23673 -29.61207 -26.72053 -26.10879 -25.72052 -25.23810 -22.70949 -21.50856 -20.90915 -19.63901 -18.73116 -17.42898 -16.92496 -16.16144 -15.99567 -15.88467 -15.29775 -15.02046 -14.75556 -14.62365 -13.94571 -13.65803 -13.56868 -13.10115 -13.07940 -12.96619 -12.55211 -12.49410 -12.33338 -12.02359 -11.75657 -11.61862 -11.40984 -11.30342 -11.14954 -11.06893 -11.00267 -10.95458 -10.88568 -10.73712 -10.62417 -10.36949 -10.29714 -10.11206 -9.68570 -9.62587 -9.51195 -9.27429 -8.69888 -8.39734 -6.04163 -4.16368 0.85599 3.18679 3.25207 3.32880 3.34388 3.79493 4.17931 4.28704 4.36084 4.37913 4.70924 4.75776 4.81723 4.97313 5.04807 5.09133 5.13799 5.21067 5.34472 5.41380 5.47210 5.55674 5.57709 5.64641 5.65446 5.69234 5.72240 5.81987 5.90984 6.04753 6.20926 6.28962 6.39354 6.68497 6.78251 6.90485 6.93062 7.02630 7.12569 7.30825 7.48424 7.67023 7.98268 8.08801 8.32797 8.82125 9.49163 10.96904 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012563 B = 0.005209 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.221729 B = 5373.687703 C = 6619.132170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.148 3.852 3 H 0.085 0.915 4 C -0.113 4.113 5 C -0.127 4.127 6 H 0.092 0.908 7 C -0.152 4.152 8 C 0.048 3.952 9 O -0.385 6.385 10 C 0.051 3.949 11 N -1.128 6.128 12 S 2.590 3.410 13 O -0.965 6.965 14 O -0.962 6.962 15 C -0.585 4.585 16 C 0.084 3.916 17 C -0.162 4.162 18 C -0.164 4.164 19 C -0.500 4.500 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.883 5.883 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.411 0.589 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.023 0.977 42 H 0.098 0.902 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.094 0.906 46 H 0.029 0.971 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 -9.317 15.124 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.041 3.959 3 H 0.103 0.897 4 C -0.152 4.152 5 C -0.145 4.145 6 H 0.110 0.890 7 C -0.189 4.189 8 C -0.028 4.028 9 O -0.304 6.304 10 C -0.026 4.026 11 N -0.886 5.886 12 S 2.688 3.312 13 O -0.955 6.955 14 O -0.952 6.952 15 C -0.719 4.719 16 C 0.081 3.919 17 C -0.220 4.220 18 C -0.221 4.221 19 C -0.540 4.540 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.521 5.521 23 Si 0.723 3.277 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.245 0.755 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.042 0.958 42 H 0.116 0.884 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.113 0.887 46 H 0.048 0.952 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.179 -9.282 14.003 17.900 hybrid contribution 1.194 0.601 0.933 1.630 sum -4.984 -8.681 14.937 17.981 Atomic orbital electron populations 1.22336 0.94895 1.02566 1.03316 1.20768 0.94597 0.96040 0.84496 0.89658 1.21882 0.93798 1.01696 0.97786 1.22826 0.95994 1.01107 0.94601 0.89003 1.23320 0.96535 1.01088 0.97967 1.23362 0.96435 1.00232 0.82774 1.88437 1.46973 1.70778 1.24208 1.23544 0.87020 0.95946 0.96054 1.56181 1.83069 1.19575 1.29795 1.05710 0.77136 0.75344 0.73037 1.93565 1.83142 1.59067 1.59750 1.93537 1.45426 1.73263 1.82945 1.30622 1.16116 1.13882 1.11234 1.17915 0.95331 0.91409 0.87203 1.22231 0.99388 0.98511 1.01857 1.22288 0.95514 1.01129 1.03199 1.20941 1.16604 1.19559 0.96875 0.92320 1.24930 0.96974 0.96820 0.95011 1.69800 1.40777 1.37474 1.04052 0.86537 0.82741 0.79915 0.78543 1.20657 1.21132 1.19967 0.92331 0.91851 0.90450 0.89987 0.90777 0.89900 0.90331 0.89998 0.92107 0.90956 0.91149 0.75464 0.86574 0.86196 0.95788 0.88361 0.94567 0.94542 0.88696 0.95202 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.48 37.16 0.35 -1.41 16 2 C 0.15 1.57 2.69 -67.93 -0.18 1.39 16 3 H 0.09 0.91 6.95 -51.93 -0.36 0.55 16 4 C -0.11 -0.90 4.35 -26.73 -0.12 -1.02 16 5 C -0.13 -1.19 3.01 -88.67 -0.27 -1.46 16 6 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 7 C -0.15 -1.20 6.62 -24.49 -0.16 -1.36 16 8 C 0.05 0.48 7.78 38.18 0.30 0.78 16 9 O -0.38 -5.23 11.36 -35.23 -0.40 -5.63 16 10 C 0.05 0.62 5.85 37.88 0.22 0.84 16 11 N -1.13 -14.44 3.60 -4.89 -0.02 -14.46 16 12 S 2.59 46.95 4.43 -107.50 -0.48 46.47 16 13 O -0.96 -20.25 15.92 -57.54 -0.92 -21.16 16 14 O -0.96 -19.64 14.49 -57.54 -0.83 -20.47 16 15 C -0.59 -11.13 4.55 37.16 0.17 -10.96 16 16 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 17 C -0.16 -4.02 7.59 37.16 0.28 -3.73 16 18 C -0.16 -3.99 7.79 37.16 0.29 -3.70 16 19 C -0.50 -12.99 8.01 -34.44 -0.28 -13.27 16 20 H 0.06 1.48 7.75 -52.48 -0.41 1.08 16 21 C 0.06 1.70 5.12 -17.82 -0.09 1.61 16 22 N -0.88 -24.01 9.34 55.43 0.52 -23.49 16 23 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.99 7.25 -51.93 -0.38 0.62 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.54 8.03 -51.93 -0.42 0.12 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.79 5.86 -51.93 -0.30 0.49 16 37 H 0.07 0.95 5.62 -51.93 -0.29 0.66 16 38 H 0.41 4.54 6.94 -34.47 -0.24 4.30 16 39 H 0.12 1.95 7.26 -51.93 -0.38 1.57 16 40 H 0.12 2.12 6.14 -51.92 -0.32 1.80 16 41 H 0.02 0.56 6.00 -51.93 -0.31 0.25 16 42 H 0.10 2.62 5.89 -51.93 -0.31 2.32 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.09 2.51 6.10 -51.93 -0.32 2.19 16 46 H 0.03 0.69 5.42 -51.93 -0.28 0.41 16 47 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -32.09 358.17 -8.98 -41.07 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.66 Total: 7.10 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 0.44 Total: -30.38 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.50 Total: -37.95 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -2.15 Total: -47.26 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 46.95 SS G_CDS: -0.48 Total: 46.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.09 -8.98 -41.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590749815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.036 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds