Wall clock time and date at job start Tue Mar 31 2020 12:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46834 * 2 1 4 4 C 1.52998 * 109.46834 * 119.99995 * 2 1 3 5 5 C 1.52998 * 109.47061 * 185.69529 * 4 2 1 6 6 H 1.09004 * 110.75164 * 55.16045 * 5 4 2 7 7 C 1.55302 * 110.85185 * 178.85562 * 5 4 2 8 8 C 1.54943 * 100.94604 * 152.32446 * 7 5 4 9 9 O 1.43648 * 105.13637 * 323.55436 * 8 7 5 10 10 C 1.43239 * 109.96820 * 24.42873 * 9 8 7 11 11 N 1.46499 * 109.46992 * 239.99762 * 2 1 3 12 12 S 1.65601 * 120.00052 * 93.05003 * 11 2 1 13 13 O 1.42098 * 104.27763 * 178.78313 * 12 11 2 14 14 O 1.42099 * 104.27262 * 306.64071 * 12 11 2 15 15 C 1.81397 * 104.44919 * 62.70930 * 12 11 2 16 16 C 1.53001 * 109.47263 * 181.01764 * 15 12 11 17 17 C 1.53005 * 109.46870 * 300.00167 * 16 15 12 18 18 C 1.52997 * 109.46818 * 60.00167 * 16 15 12 19 19 C 1.50699 * 109.47318 * 180.02562 * 16 15 12 20 20 H 1.08004 * 119.99725 * 358.40565 * 19 16 15 21 21 C 1.37868 * 120.00133 * 178.40801 * 19 16 15 22 22 N 1.31517 * 120.00192 * 2.70751 * 21 19 16 23 23 Si 1.86803 * 120.00211 * 182.70690 * 21 19 16 24 24 H 1.48495 * 109.47007 * 94.99299 * 23 21 19 25 25 H 1.48504 * 109.47074 * 214.99229 * 23 21 19 26 26 H 1.48500 * 109.46831 * 334.99554 * 23 21 19 27 27 H 1.09010 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47363 * 299.99738 * 1 2 3 29 29 H 1.08997 * 109.47360 * 60.00561 * 1 2 3 30 30 H 1.09004 * 109.47605 * 305.69500 * 4 2 1 31 31 H 1.09004 * 109.47641 * 65.69849 * 4 2 1 32 32 H 1.09001 * 111.12713 * 270.24770 * 7 5 4 33 33 H 1.09004 * 111.12562 * 34.40249 * 7 5 4 34 34 H 1.09001 * 110.31159 * 204.64112 * 8 7 5 35 35 H 1.09000 * 110.31116 * 82.47190 * 8 7 5 36 36 H 1.08996 * 109.83114 * 238.77345 * 10 9 8 37 37 H 1.09002 * 109.83539 * 117.80141 * 10 9 8 38 38 H 0.97009 * 119.99930 * 273.05238 * 11 2 1 39 39 H 1.08996 * 109.47609 * 301.02131 * 15 12 11 40 40 H 1.08999 * 109.46868 * 61.02086 * 15 12 11 41 41 H 1.08998 * 109.46711 * 66.60173 * 17 16 15 42 42 H 1.09003 * 109.46779 * 186.59861 * 17 16 15 43 43 H 1.08993 * 109.47371 * 306.60122 * 17 16 15 44 44 H 1.08994 * 109.47292 * 60.00070 * 18 16 15 45 45 H 1.09002 * 109.46605 * 180.02562 * 18 16 15 46 46 H 1.09005 * 109.47420 * 299.99981 * 18 16 15 47 47 H 0.96999 * 120.00597 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5632 -0.5985 1.3229 6 1 3.8686 0.4473 1.2873 7 6 4.1131 -1.2963 2.5967 8 6 5.5370 -1.6868 2.1269 9 8 5.3899 -2.0477 0.7443 10 6 4.2349 -1.4058 0.1913 11 7 2.0183 -0.6907 -1.1961 12 16 2.3663 0.1719 -2.5663 13 8 2.8303 -0.8056 -3.4874 14 8 1.1829 0.9160 -2.8218 15 6 3.7188 1.2762 -2.0747 16 6 4.1178 2.1541 -3.2625 17 6 4.5792 1.2665 -4.4203 18 6 2.9147 2.9880 -3.7073 19 6 5.2419 3.0710 -2.8543 20 1 5.6153 3.0497 -1.8411 21 6 5.7936 3.9372 -3.7742 22 7 5.3039 4.0013 -4.9931 23 14 7.2367 5.0198 -3.2893 24 1 8.5063 4.3569 -3.6811 25 1 7.1277 6.3291 -3.9815 26 1 7.2230 5.2339 -1.8199 27 1 -0.3634 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.5957 -0.2697 2.1364 31 1 1.7623 -1.7742 1.1998 32 1 4.1529 -0.6041 3.4378 33 1 3.5253 -2.1800 2.8453 34 1 5.9057 -2.5359 2.7023 35 1 6.2142 -0.8386 2.2265 36 1 3.5418 -2.1559 -0.1894 37 1 4.5345 -0.7350 -0.6139 38 1 2.1378 -1.6533 -1.1856 39 1 3.3902 1.9084 -1.2499 40 1 4.5759 0.6821 -1.7579 41 1 3.7345 0.6870 -4.7927 42 1 4.9732 1.8910 -5.2222 43 1 5.3586 0.5894 -4.0708 44 1 2.5860 3.6202 -2.8825 45 1 3.1989 3.6130 -4.5538 46 1 2.1019 2.3244 -4.0027 47 1 5.6918 4.6110 -5.6403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590749815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:39 Heat of formation + Delta-G solvation = -152.231919 kcal Electronic energy + Delta-G solvation = -27514.093370 eV Core-core repulsion = 23822.871757 eV Total energy + Delta-G solvation = -3691.221613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.59479 -38.25017 -38.14675 -37.75970 -36.86458 -33.75616 -33.61985 -31.16872 -30.37327 -28.37244 -27.70833 -27.25823 -26.88398 -23.49549 -22.34115 -21.73406 -21.31588 -20.16756 -18.85425 -17.86615 -17.80678 -17.10397 -16.94287 -16.78099 -16.64803 -16.13522 -15.69124 -15.08323 -14.80294 -14.65805 -14.49736 -14.44575 -14.20827 -13.85558 -13.79340 -13.48913 -13.20509 -13.04980 -12.95222 -12.90648 -12.79008 -12.62124 -12.47986 -12.44007 -12.23588 -12.13867 -11.99889 -11.97558 -11.67097 -11.61353 -11.59210 -11.47322 -11.30880 -10.68272 -10.43886 -10.40227 -10.30008 -8.03611 -6.22203 -0.60064 1.42747 1.45103 1.53443 1.91758 2.43422 2.84596 3.02220 3.18541 3.33342 3.47786 3.67260 3.88251 4.01404 4.05222 4.16424 4.23767 4.31714 4.33544 4.40896 4.51678 4.59773 4.72531 4.74730 4.83722 4.85718 4.89274 4.92385 4.95407 5.01174 5.03167 5.06682 5.09436 5.16822 5.30871 5.38191 5.46052 5.48637 5.49130 5.63800 5.96525 6.10462 6.10542 6.16289 6.33825 6.82461 7.46076 8.96197 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012563 B = 0.005209 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.221729 B = 5373.687703 C = 6619.132170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.137 3.863 3 H 0.085 0.915 4 C -0.102 4.102 5 C -0.126 4.126 6 H 0.088 0.912 7 C -0.139 4.139 8 C 0.036 3.964 9 O -0.416 6.416 10 C 0.039 3.961 11 N -1.110 6.110 12 S 2.609 3.391 13 O -0.998 6.998 14 O -0.986 6.986 15 C -0.587 4.587 16 C 0.072 3.928 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.514 4.514 20 H 0.063 0.937 21 C 0.018 3.982 22 N -0.907 5.907 23 Si 0.952 3.048 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.265 1.265 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.421 0.579 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.025 0.975 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.042 0.958 45 H 0.069 0.931 46 H 0.033 0.967 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.370 -9.841 18.292 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.031 3.969 3 H 0.103 0.897 4 C -0.141 4.141 5 C -0.145 4.145 6 H 0.106 0.894 7 C -0.177 4.177 8 C -0.040 4.040 9 O -0.336 6.336 10 C -0.037 4.037 11 N -0.873 5.873 12 S 2.705 3.295 13 O -0.988 6.988 14 O -0.976 6.976 15 C -0.720 4.720 16 C 0.070 3.930 17 C -0.217 4.217 18 C -0.216 4.216 19 C -0.553 4.553 20 H 0.081 0.919 21 C -0.182 4.182 22 N -0.546 5.546 23 Si 0.778 3.222 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.190 1.190 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.259 0.741 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.043 0.957 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.711 -9.805 17.180 20.888 hybrid contribution 1.351 0.713 -0.017 1.528 sum -5.360 -9.092 17.162 20.148 Atomic orbital electron populations 1.22334 0.94353 1.03314 1.03120 1.21122 0.95088 0.96321 0.84400 0.89700 1.21857 0.92576 1.02448 0.97172 1.22843 0.96803 1.00579 0.94266 0.89358 1.23297 0.94854 1.01888 0.97634 1.23609 0.98069 1.00831 0.81490 1.88402 1.47742 1.71219 1.26243 1.23667 0.87149 0.96198 0.96702 1.55723 1.82560 1.19800 1.29247 1.04835 0.76264 0.74801 0.73557 1.93513 1.83525 1.59771 1.62012 1.93506 1.46033 1.74127 1.83911 1.30528 1.17399 1.14130 1.09896 1.17893 0.94731 0.91806 0.88608 1.22169 0.99412 0.98287 1.01790 1.22204 0.95945 1.01025 1.02449 1.21282 1.17161 1.19809 0.97057 0.91881 1.25660 0.99228 0.98194 0.95071 1.69940 1.41812 1.38038 1.04846 0.85632 0.79774 0.78165 0.78600 1.20692 1.21165 1.18978 0.91163 0.89222 0.93483 0.87034 0.89422 0.87857 0.88930 0.88596 0.92492 0.90245 0.93345 0.74137 0.84323 0.85080 0.95658 0.90711 0.94362 0.93879 0.91207 0.94840 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.48 71.98 0.68 -2.36 16 2 C 0.14 2.51 2.69 44.99 0.12 2.63 16 3 H 0.08 1.58 6.95 -2.39 -0.02 1.57 16 4 C -0.10 -1.21 4.35 30.59 0.13 -1.08 16 5 C -0.13 -2.00 3.01 -9.53 -0.03 -2.03 16 6 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 7 C -0.14 -1.71 6.62 32.05 0.21 -1.49 16 8 C 0.04 0.64 7.78 72.65 0.56 1.21 16 9 O -0.42 -10.90 11.36 -148.98 -1.69 -12.59 16 10 C 0.04 0.89 5.85 72.45 0.42 1.32 16 11 N -1.11 -26.64 3.60 -169.40 -0.61 -27.25 16 12 S 2.61 93.61 4.43 -56.49 -0.25 93.36 16 13 O -1.00 -42.16 15.92 -127.65 -2.03 -44.19 16 14 O -0.99 -40.11 14.49 -127.65 -1.85 -41.96 16 15 C -0.59 -22.02 4.55 71.98 0.33 -21.69 16 16 C 0.07 3.46 0.52 -52.93 -0.03 3.43 16 17 C -0.16 -8.06 7.59 71.98 0.55 -7.51 16 18 C -0.16 -7.84 7.79 71.98 0.56 -7.28 16 19 C -0.51 -26.67 8.01 25.60 0.21 -26.47 16 20 H 0.06 3.14 7.75 -2.91 -0.02 3.11 16 21 C 0.02 0.94 5.12 84.65 0.43 1.38 16 22 N -0.91 -50.43 9.34 21.44 0.20 -50.23 16 23 Si 0.95 42.19 29.54 68.60 2.03 44.21 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.14 7.25 -2.39 -0.02 1.12 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.87 8.03 -2.39 -0.02 0.85 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.90 8.04 -2.38 -0.02 0.88 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.61 5.86 -2.39 -0.01 1.60 16 37 H 0.05 1.29 5.62 -2.39 -0.01 1.27 16 38 H 0.42 8.57 6.94 -96.73 -0.67 7.90 16 39 H 0.14 4.46 7.26 -2.39 -0.02 4.44 16 40 H 0.13 4.59 6.14 -2.39 -0.01 4.58 16 41 H 0.02 1.23 6.00 -2.39 -0.01 1.21 16 42 H 0.07 4.13 5.89 -2.39 -0.01 4.12 16 43 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.07 3.79 6.10 -2.39 -0.01 3.78 16 46 H 0.03 1.59 5.42 -2.38 -0.01 1.57 16 47 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -70.40 358.17 0.24 -70.16 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.29 Total: 28.43 kcal Atomic # 6 Polarization: -64.10 SS G_CDS: 4.15 Total: -59.94 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -0.41 Total: -77.48 kcal Atomic # 8 Polarization: -93.17 SS G_CDS: -5.57 Total: -98.75 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 93.61 SS G_CDS: -0.25 Total: 93.36 kcal Total: -70.40 0.24 -70.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590749815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.073 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds