Wall clock time and date at job start Tue Mar 31 2020 13:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46811 * 2 1 4 4 O 1.42897 * 109.46752 * 239.99836 * 2 1 3 5 5 C 1.42904 * 113.99980 * 90.00558 * 4 2 1 6 6 C 1.50699 * 109.47016 * 179.97438 * 5 4 2 7 7 C 1.38237 * 119.99793 * 269.71983 * 6 5 4 8 8 C 1.38236 * 119.99985 * 179.81287 * 7 6 5 9 9 C 1.38227 * 119.99804 * 0.39811 * 8 7 6 10 10 C 1.38232 * 120.00283 * 359.85863 * 9 8 7 11 11 C 1.38232 * 120.00195 * 89.99897 * 6 5 4 12 12 C 1.50700 * 109.46935 * 119.99735 * 2 1 3 13 13 O 1.21282 * 119.99407 * 112.71313 * 12 2 1 14 14 N 1.34766 * 120.00373 * 292.71094 * 12 2 1 15 15 C 1.47293 * 125.79602 * 175.04155 * 14 12 2 16 16 C 1.54320 * 107.30854 * 178.92389 * 15 14 12 17 17 C 1.55166 * 102.94310 * 337.81713 * 16 15 14 18 18 O 1.42903 * 111.00463 * 277.42883 * 17 16 15 19 19 C 1.50700 * 111.03669 * 153.59113 * 17 16 15 20 20 H 1.08005 * 119.99516 * 247.78590 * 19 17 16 21 21 C 1.37875 * 120.00103 * 67.78482 * 19 17 16 22 22 N 1.31517 * 119.99904 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 119.99884 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47113 * 60.00296 * 23 21 19 25 25 H 1.48503 * 109.46889 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47207 * 300.00265 * 23 21 19 27 27 C 1.47428 * 125.64788 * 355.03803 * 14 12 2 28 28 H 1.08997 * 109.47042 * 185.15459 * 1 2 3 29 29 H 1.09000 * 109.46719 * 305.15007 * 1 2 3 30 30 H 1.09001 * 109.46904 * 65.15144 * 1 2 3 31 31 H 1.09003 * 109.46828 * 299.99508 * 5 4 2 32 32 H 1.08994 * 109.47613 * 59.99036 * 5 4 2 33 33 H 1.08005 * 119.99885 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.99994 * 180.23074 * 8 7 6 35 35 H 1.08005 * 120.00086 * 179.83621 * 9 8 7 36 36 H 1.08008 * 120.00128 * 179.97438 * 10 9 8 37 37 H 1.08003 * 120.00060 * 359.97354 * 11 6 5 38 38 H 1.09004 * 109.85262 * 59.50239 * 15 14 12 39 39 H 1.08996 * 109.99844 * 298.42866 * 15 14 12 40 40 H 1.08999 * 110.72247 * 219.45903 * 16 15 14 41 41 H 1.09004 * 110.72248 * 96.17693 * 16 15 14 42 42 H 0.96700 * 113.99919 * 292.19905 * 18 17 16 43 43 H 0.96997 * 119.99744 * 179.97438 * 22 21 19 44 44 H 1.09004 * 110.36342 * 85.26380 * 27 14 12 45 45 H 1.08994 * 110.36772 * 323.04948 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7014 -0.6283 -3.4610 7 6 4.0600 -0.7957 -3.6536 8 6 4.5198 -1.5430 -4.7218 9 6 3.6211 -2.1160 -5.6020 10 6 2.2627 -1.9443 -5.4125 11 6 1.8028 -1.2002 -4.3421 12 6 2.0323 -0.7104 1.2305 13 8 2.6168 -1.7677 1.1241 14 7 1.8321 -0.1707 2.4491 15 6 2.1745 -0.7992 3.7364 16 6 1.7896 0.1969 4.8504 17 6 1.7748 1.5595 4.1083 18 8 3.0932 2.1012 4.0055 19 6 0.8449 2.5337 4.7846 20 1 -0.0605 2.8497 4.2876 21 6 1.1498 3.0215 6.0376 22 7 2.2520 2.6361 6.6429 23 14 -0.0025 4.2295 6.8754 24 1 -1.3366 3.6012 7.0500 25 1 0.5487 4.5993 8.2039 26 1 -0.1353 5.4489 6.0383 27 6 1.2329 1.1495 2.7162 28 1 -0.3633 -1.0235 0.0923 29 1 -0.3633 0.5917 0.8403 30 1 -0.3633 0.4319 -0.9325 31 1 1.2538 0.6547 -2.5589 32 1 2.9319 0.9513 -2.0451 33 1 4.7622 -0.3447 -2.9680 34 1 5.5811 -1.6769 -4.8701 35 1 3.9804 -2.6977 -6.4381 36 1 1.5606 -2.3917 -6.1005 37 1 0.7414 -1.0660 -4.1939 38 1 3.2445 -1.0038 3.7755 39 1 1.6152 -1.7266 3.8590 40 1 2.5382 0.1976 5.6428 41 1 0.8027 -0.0348 5.2509 42 1 3.4742 2.3721 4.8520 43 1 2.4667 2.9796 7.5242 44 1 0.1456 1.0749 2.7393 45 1 1.5471 1.8688 1.9600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:48 Heat of formation + Delta-G solvation = -120.402325 kcal Electronic energy + Delta-G solvation = -26737.589722 eV Core-core repulsion = 22912.304393 eV Total energy + Delta-G solvation = -3825.285330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.32092 -40.26494 -39.25649 -38.24659 -36.05413 -34.09846 -33.67470 -32.31136 -31.80249 -30.96866 -29.91276 -27.23175 -26.94531 -25.48902 -23.49491 -23.23292 -22.27849 -21.66045 -20.45316 -19.11958 -18.57301 -17.75181 -17.54792 -16.96395 -16.93615 -16.76663 -16.48483 -16.09831 -15.78224 -15.48678 -15.04119 -14.78891 -14.50738 -14.30515 -14.17293 -13.89555 -13.76475 -13.64728 -13.41689 -13.27813 -13.18130 -13.02027 -12.89962 -12.58387 -12.44768 -12.41514 -12.25213 -11.93320 -11.88818 -11.83810 -11.35640 -11.01859 -10.63586 -10.52064 -10.12989 -9.83201 -9.77519 -9.64185 -8.21310 -6.36261 0.30721 0.49054 1.48135 1.49663 1.51622 1.56544 1.75463 2.41701 2.66223 3.04102 3.13024 3.42844 3.77739 3.83549 3.86773 3.95780 4.03861 4.10270 4.13746 4.23812 4.27766 4.29208 4.33313 4.37708 4.60266 4.63131 4.63617 4.69143 4.74233 4.77792 4.86745 5.05819 5.13467 5.14513 5.18526 5.26327 5.44085 5.49243 5.53466 5.59399 5.65846 5.80311 6.02330 6.05124 6.09951 6.51528 6.69963 7.08513 7.35048 7.45365 8.84904 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027359 B = 0.002530 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.179848 B =11065.986500 C =11293.353261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.080 3.920 3 H 0.101 0.899 4 O -0.378 6.378 5 C 0.095 3.905 6 C -0.109 4.109 7 C -0.119 4.119 8 C -0.133 4.133 9 C -0.120 4.120 10 C -0.130 4.130 11 C -0.109 4.109 12 C 0.519 3.481 13 O -0.582 6.582 14 N -0.606 5.606 15 C 0.114 3.886 16 C -0.128 4.128 17 C 0.231 3.769 18 O -0.596 6.596 19 C -0.553 4.553 20 H 0.072 0.928 21 C 0.030 3.970 22 N -0.916 5.916 23 Si 0.962 3.038 24 H -0.270 1.270 25 H -0.289 1.289 26 H -0.273 1.273 27 C 0.117 3.883 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.381 0.619 43 H 0.270 0.730 44 H 0.097 0.903 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 -3.345 -19.128 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.119 0.881 4 O -0.297 6.297 5 C 0.019 3.981 6 C -0.109 4.109 7 C -0.137 4.137 8 C -0.151 4.151 9 C -0.137 4.137 10 C -0.148 4.148 11 C -0.127 4.127 12 C 0.308 3.692 13 O -0.462 6.462 14 N -0.339 5.339 15 C -0.008 4.008 16 C -0.167 4.167 17 C 0.191 3.809 18 O -0.406 6.406 19 C -0.591 4.591 20 H 0.090 0.910 21 C -0.170 4.170 22 N -0.556 5.556 23 Si 0.788 3.212 24 H -0.195 1.195 25 H -0.214 1.214 26 H -0.198 1.198 27 C -0.004 4.004 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.232 0.768 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.693 -4.234 -19.741 20.369 hybrid contribution 0.033 0.843 1.729 1.924 sum -2.660 -3.391 -18.012 18.521 Atomic orbital electron populations 1.22212 0.91102 1.03530 1.05130 1.21873 0.96782 0.96003 0.83417 0.88103 1.88075 1.86947 1.35356 1.19344 1.21631 1.01178 0.91549 0.83746 1.19763 0.94167 1.00876 0.96099 1.21305 0.95212 0.99039 0.98157 1.21440 1.01080 0.97691 0.94894 1.21563 0.93440 0.99059 0.99671 1.21503 0.96465 0.98720 0.98066 1.21333 1.00122 0.96660 0.94572 1.20727 0.78941 0.85308 0.84178 1.90638 1.43708 1.25239 1.86607 1.48624 1.60466 1.19845 1.04969 1.21967 0.99178 0.96535 0.83155 1.23043 1.01244 0.96241 0.96199 1.19849 0.81409 0.89583 0.90065 1.86067 1.32852 1.84157 1.37500 1.21710 1.07910 1.27256 1.02215 0.91000 1.25691 0.96645 0.97328 0.97356 1.69651 1.25388 1.44670 1.15852 0.85538 0.79112 0.79258 0.77265 1.19458 1.21425 1.19771 1.22556 0.97959 0.82052 0.97875 0.92326 0.89701 0.88406 0.89694 0.91892 0.86255 0.84232 0.83496 0.83468 0.84533 0.93762 0.91607 0.91743 0.91174 0.76796 0.92042 0.88491 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.38 71.98 0.68 -3.04 16 2 C 0.08 2.37 2.51 29.85 0.08 2.45 16 3 H 0.10 2.65 7.07 -2.39 -0.02 2.63 16 4 O -0.38 -11.86 9.51 -130.04 -1.24 -13.10 16 5 C 0.09 2.19 5.87 71.24 0.42 2.61 16 6 C -0.11 -2.56 5.51 -19.87 -0.11 -2.67 16 7 C -0.12 -2.76 9.70 22.27 0.22 -2.55 16 8 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 9 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 10 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 11 C -0.11 -2.17 9.70 22.27 0.22 -1.95 16 12 C 0.52 20.36 7.19 87.66 0.63 20.99 16 13 O -0.58 -27.54 16.86 15.90 0.27 -27.28 16 14 N -0.61 -23.58 3.33 -811.12 -2.70 -26.29 16 15 C 0.11 4.63 6.89 86.68 0.60 5.23 16 16 C -0.13 -5.55 5.64 31.78 0.18 -5.37 16 17 C 0.23 10.47 0.89 -10.14 -0.01 10.46 16 18 O -0.60 -29.61 13.18 -148.98 -1.96 -31.58 16 19 C -0.55 -26.41 8.25 25.60 0.21 -26.20 16 20 H 0.07 3.26 7.77 -2.91 -0.02 3.24 16 21 C 0.03 1.47 5.30 84.65 0.45 1.92 16 22 N -0.92 -46.08 10.79 21.45 0.23 -45.85 16 23 Si 0.96 38.90 29.54 68.60 2.03 40.92 16 24 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 25 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 27 C 0.12 4.38 4.81 86.85 0.42 4.80 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.84 6.12 -2.39 -0.01 1.83 16 30 H 0.10 1.65 7.78 -2.39 -0.02 1.63 16 31 H 0.08 1.48 7.73 -2.39 -0.02 1.46 16 32 H 0.06 1.37 8.03 -2.39 -0.02 1.35 16 33 H 0.12 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.06 3.01 7.85 -2.39 -0.02 2.99 16 41 H 0.07 2.96 8.03 -2.39 -0.02 2.94 16 42 H 0.38 19.63 6.93 -74.06 -0.51 19.11 16 43 H 0.27 13.11 8.31 -92.71 -0.77 12.33 16 44 H 0.10 3.21 7.09 -2.39 -0.02 3.19 16 45 H 0.08 2.77 7.29 -2.39 -0.02 2.75 16 Total: -1.00 -63.98 371.04 1.74 -62.25 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: 0.48 Total: 40.29 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 4.64 Total: 0.63 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -2.47 Total: -72.14 kcal Atomic # 8 Polarization: -69.02 SS G_CDS: -2.93 Total: -71.95 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.92 kcal Total: -63.98 1.74 -62.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.155 kcal (2) G-P(sol) polarization free energy of solvation -63.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds