Wall clock time and date at job start Tue Mar 31 2020 13:00:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08998 * 109.47098 * 2 1
4 4 O 1.42906 * 109.47105 * 239.99850 * 2 1 3
5 5 C 1.53006 * 109.46881 * 120.00218 * 2 1 3
6 6 N 1.46496 * 109.46746 * 185.00261 * 5 2 1
7 7 C 1.34781 * 119.99932 * 179.97438 * 6 5 2
8 8 O 1.21585 * 119.99619 * 359.97438 * 7 6 5
9 9 C 1.47601 * 120.00078 * 179.97438 * 7 6 5
10 10 C 1.39732 * 120.08707 * 359.72274 * 9 7 6
11 11 C 1.37711 * 119.90674 * 179.69532 * 10 9 7
12 12 C 1.38996 * 120.08960 * 0.60614 * 11 10 9
13 13 O 1.35707 * 119.91313 * 179.69965 * 12 11 10
14 14 C 1.42901 * 116.99816 * 359.97241 * 13 12 11
15 15 C 1.53004 * 109.47067 * 180.02562 * 14 13 12
16 16 C 1.50699 * 115.55126 * 65.10648 * 15 14 13
17 17 H 1.07995 * 120.00135 * 266.11205 * 16 15 14
18 18 C 1.37874 * 119.99822 * 86.11802 * 16 15 14
19 19 N 1.31513 * 119.99930 * 353.70065 * 18 16 15
20 20 Si 1.86797 * 120.00105 * 173.70633 * 18 16 15
21 21 H 1.48492 * 109.47278 * 59.99541 * 20 18 16
22 22 H 1.48498 * 109.47338 * 180.02562 * 20 18 16
23 23 H 1.48504 * 109.47017 * 299.99449 * 20 18 16
24 24 C 1.53001 * 117.49482 * 279.44069 * 15 14 13
25 25 C 1.53003 * 117.49673 * 210.78269 * 15 14 13
26 26 C 1.39000 * 120.17226 * 359.67128 * 12 11 10
27 27 C 1.37697 * 120.09225 * 0.02562 * 26 12 11
28 28 H 1.09007 * 109.47028 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47083 * 60.00220 * 1 2 3
30 30 H 1.08998 * 109.47287 * 300.00191 * 1 2 3
31 31 H 0.96694 * 114.00053 * 300.00248 * 4 2 1
32 32 H 1.08999 * 109.47053 * 304.99711 * 5 2 1
33 33 H 1.08993 * 109.47128 * 64.99913 * 5 2 1
34 34 H 0.97002 * 120.00454 * 359.97438 * 6 5 2
35 35 H 1.07998 * 120.04438 * 359.97438 * 10 9 7
36 36 H 1.07998 * 119.95211 * 180.30100 * 11 10 9
37 37 H 1.09001 * 109.47315 * 299.99917 * 14 13 12
38 38 H 1.08994 * 109.47229 * 60.00520 * 14 13 12
39 39 H 0.97000 * 120.00264 * 179.97438 * 19 18 16
40 40 H 1.09003 * 117.50194 * 359.97438 * 24 15 14
41 41 H 1.08998 * 117.50243 * 145.02083 * 24 15 14
42 42 H 1.08995 * 117.49324 * 214.97395 * 25 15 14
43 43 H 1.09003 * 117.49713 * 359.97285 * 25 15 14
44 44 H 1.08001 * 119.95126 * 180.02562 * 26 12 11
45 45 H 1.08003 * 120.04341 * 179.97438 * 27 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 8 2.0063 -0.6737 -1.1668
5 6 2.0399 -0.7213 1.2493
6 7 3.4999 -0.6179 1.3110
7 6 4.1729 -1.1827 2.3331
8 8 3.5682 -1.7776 3.2041
9 6 5.6440 -1.0789 2.3950
10 6 6.3412 -0.4006 1.3919
11 6 7.7132 -0.3007 1.4567
12 6 8.4054 -0.8842 2.5113
13 8 9.7579 -0.7888 2.5683
14 6 10.4030 -0.0755 1.5114
15 6 11.9151 -0.0744 1.7455
16 6 12.5839 -1.4233 1.6800
17 1 12.7379 -1.9941 2.5837
18 6 12.9992 -1.9285 0.4662
19 7 12.7026 -1.2935 -0.6466
20 14 13.9829 -3.5152 0.4023
21 1 13.1838 -4.6173 0.9952
22 1 14.3054 -3.8411 -1.0101
23 1 15.2425 -3.3479 1.1710
24 6 12.4751 0.9442 2.7403
25 6 12.7075 1.1324 1.2391
26 6 7.7159 -1.5648 3.5081
27 6 6.3435 -1.6638 3.4539
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 0.5138 0.8899
31 1 1.7210 -1.5952 -1.2329
32 1 1.6053 -0.2618 2.1370
33 1 1.7516 -1.7715 1.2056
34 1 3.9824 -0.1430 0.6163
35 1 5.8045 0.0485 0.5694
36 1 8.2524 0.2276 0.6843
37 1 10.1834 -0.5592 0.5596
38 1 10.0377 0.9512 1.4901
39 1 12.9950 -1.6487 -1.5005
40 1 11.7665 1.6139 3.2277
41 1 13.3276 0.6389 3.3471
42 1 13.7127 0.9508 0.8588
43 1 12.1516 1.9255 0.7387
44 1 8.2573 -2.0165 4.3261
45 1 5.8086 -2.1932 4.2285
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000596275653.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:00:46
Heat of formation + Delta-G solvation = -103.191837 kcal
Electronic energy + Delta-G solvation = -25798.481192 eV
Core-core repulsion = 21973.942165 eV
Total energy + Delta-G solvation = -3824.539027 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.46842 -40.56028 -38.89809 -38.44433 -37.35063 -35.43781 -34.01858 -32.55127
-31.92087 -31.14504 -28.61816 -27.47523 -27.03844 -24.27486 -23.56227 -22.93132
-22.76524 -21.45561 -21.01812 -19.43311 -18.66801 -18.19176 -17.67306 -17.16005
-16.87266 -16.80713 -16.37551 -16.29726 -15.85826 -15.79013 -15.41347 -15.16439
-14.78888 -14.57003 -14.35435 -14.03546 -13.80062 -13.66961 -13.40514 -13.29257
-13.22547 -12.94285 -12.83541 -12.79064 -12.41699 -12.11450 -11.94404 -11.89652
-11.81692 -11.44670 -11.32332 -10.94523 -10.79573 -10.47811 -10.21397 -10.11655
-10.06974 -9.18721 -8.14888 -6.24173 -0.10168 0.32184 1.41343 1.41833
1.49112 1.81087 2.10662 2.30119 2.42352 2.84329 3.14604 3.46263
3.51522 3.63657 3.74219 3.78282 3.88354 4.06816 4.14043 4.21691
4.22762 4.39677 4.41424 4.49240 4.54557 4.56606 4.67562 4.69837
4.84734 4.86117 4.95342 4.98295 5.12288 5.13248 5.20579 5.24258
5.27028 5.33725 5.39409 5.53890 5.60163 5.70162 5.75193 6.35669
6.45397 6.57412 6.77683 6.79251 7.14671 7.43785 8.93429
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.017649 B = 0.002425 C = 0.002373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1586.125649 B =11541.806913 C =11794.557959
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.098 3.902
3 H 0.110 0.890
4 O -0.576 6.576
5 C 0.086 3.914
6 N -0.713 5.713
7 C 0.568 3.432
8 O -0.582 6.582
9 C -0.201 4.201
10 C -0.027 4.027
11 C -0.228 4.228
12 C 0.150 3.850
13 O -0.313 6.313
14 C 0.117 3.883
15 C 0.004 3.996
16 C -0.507 4.507
17 H 0.046 0.954
18 C 0.029 3.971
19 N -0.904 5.904
20 Si 0.945 3.055
21 H -0.277 1.277
22 H -0.281 1.281
23 H -0.272 1.272
24 C -0.185 4.185
25 C -0.142 4.142
26 C -0.176 4.176
27 C -0.020 4.020
28 H 0.068 0.932
29 H 0.071 0.929
30 H 0.077 0.923
31 H 0.389 0.611
32 H 0.076 0.924
33 H 0.068 0.932
34 H 0.413 0.587
35 H 0.159 0.841
36 H 0.139 0.861
37 H 0.047 0.953
38 H 0.057 0.943
39 H 0.262 0.738
40 H 0.092 0.908
41 H 0.078 0.922
42 H 0.066 0.934
43 H 0.084 0.916
44 H 0.140 0.860
45 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.036 4.788 0.059 22.550
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.039 3.961
3 H 0.128 0.872
4 O -0.384 6.384
5 C -0.037 4.037
6 N -0.365 5.365
7 C 0.357 3.643
8 O -0.464 6.464
9 C -0.204 4.204
10 C -0.046 4.046
11 C -0.247 4.247
12 C 0.102 3.898
13 O -0.225 6.225
14 C 0.042 3.958
15 C 0.003 3.997
16 C -0.544 4.544
17 H 0.065 0.935
18 C -0.172 4.172
19 N -0.541 5.541
20 Si 0.771 3.229
21 H -0.202 1.202
22 H -0.207 1.207
23 H -0.197 1.197
24 C -0.222 4.222
25 C -0.179 4.179
26 C -0.195 4.195
27 C -0.039 4.039
28 H 0.087 0.913
29 H 0.090 0.910
30 H 0.096 0.904
31 H 0.239 0.761
32 H 0.095 0.905
33 H 0.087 0.913
34 H 0.250 0.750
35 H 0.176 0.824
36 H 0.156 0.844
37 H 0.066 0.934
38 H 0.075 0.925
39 H 0.071 0.929
40 H 0.110 0.890
41 H 0.096 0.904
42 H 0.085 0.915
43 H 0.103 0.897
44 H 0.158 0.842
45 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -22.041 4.880 0.461 22.580
hybrid contribution 0.829 -1.191 -0.498 1.534
sum -21.213 3.689 -0.037 21.531
Atomic orbital electron populations
1.22382 0.93843 1.03673 1.03761 1.22151 0.94699 0.96725 0.82528
0.87236 1.86586 1.77585 1.30530 1.43697 1.22266 0.79509 1.01831
1.00139 1.45758 1.08204 1.56442 1.26126 1.18203 0.87060 0.77785
0.81247 1.90731 1.70547 1.44736 1.40382 1.19768 0.92677 1.08229
0.99763 1.21253 0.92854 0.93869 0.96617 1.21414 0.95862 1.07010
1.00399 1.19864 0.83374 0.92440 0.94124 1.86124 1.16333 1.71352
1.48717 1.22373 0.92625 0.93086 0.87677 1.18876 0.88923 0.90997
1.00870 1.20570 1.38584 1.02420 0.92866 0.93546 1.25593 0.96464
0.99777 0.95389 1.70047 1.45770 1.40641 0.97664 0.85817 0.79522
0.80490 0.77062 1.20239 1.20669 1.19692 1.23014 1.03212 1.03899
0.92119 1.22468 1.00631 0.99523 0.95298 1.20540 0.93892 1.04580
1.00476 1.21078 0.92221 0.94194 0.96420 0.91305 0.90991 0.90438
0.76096 0.90529 0.91345 0.74951 0.82400 0.84367 0.93444 0.92489
0.92912 0.89004 0.90371 0.91517 0.89715 0.84166 0.83744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.18 9.53 71.98 0.69 -0.50 16
2 C 0.10 0.95 3.62 30.60 0.11 1.07 16
3 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16
4 O -0.58 -7.04 13.29 -148.98 -1.98 -9.02 16
5 C 0.09 1.21 5.31 86.38 0.46 1.67 16
6 N -0.71 -12.87 5.45 -466.20 -2.54 -15.41 16
7 C 0.57 14.64 7.76 86.71 0.67 15.32 16
8 O -0.58 -18.76 16.34 -3.98 -0.07 -18.82 16
9 C -0.20 -5.37 5.87 -20.08 -0.12 -5.49 16
10 C -0.03 -0.67 9.53 22.51 0.21 -0.45 16
11 C -0.23 -6.91 9.01 22.33 0.20 -6.71 16
12 C 0.15 5.32 6.70 22.63 0.15 5.47 16
13 O -0.31 -13.34 10.05 -90.27 -0.91 -14.24 16
14 C 0.12 5.05 4.56 71.98 0.33 5.38 16
15 C 0.00 0.18 1.62 -52.93 -0.09 0.09 16
16 C -0.51 -27.61 8.77 25.60 0.22 -27.38 16
17 H 0.05 2.60 7.82 -2.91 -0.02 2.57 16
18 C 0.03 1.54 5.38 84.65 0.46 2.00 16
19 N -0.90 -49.81 12.88 21.45 0.28 -49.53 16
20 Si 0.95 43.21 29.54 68.60 2.03 45.24 16
21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16
22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16
23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
24 C -0.19 -7.69 9.96 30.62 0.30 -7.39 16
25 C -0.14 -6.25 9.37 30.62 0.29 -5.96 16
26 C -0.18 -5.58 9.97 22.32 0.22 -5.36 16
27 C -0.02 -0.58 9.58 22.50 0.22 -0.36 16
28 H 0.07 0.38 8.14 -2.38 -0.02 0.37 16
29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16
30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16
31 H 0.39 2.61 9.04 -74.06 -0.67 1.94 16
32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
34 H 0.41 5.97 6.49 -92.71 -0.60 5.37 16
35 H 0.16 2.62 6.39 -2.91 -0.02 2.60 16
36 H 0.14 4.08 6.28 -2.91 -0.02 4.06 16
37 H 0.05 2.23 7.65 -2.39 -0.02 2.21 16
38 H 0.06 2.14 7.60 -2.39 -0.02 2.12 16
39 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16
40 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16
41 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16
42 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16
43 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16
44 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16
45 H 0.14 3.86 7.64 -2.91 -0.02 3.84 16
Total: -1.00 -67.14 382.14 0.88 -66.26
By element:
Atomic # 1 Polarization: 24.40 SS G_CDS: -0.26 Total: 24.14 kcal
Atomic # 6 Polarization: -32.94 SS G_CDS: 4.33 Total: -28.60 kcal
Atomic # 7 Polarization: -62.68 SS G_CDS: -2.27 Total: -64.94 kcal
Atomic # 8 Polarization: -39.13 SS G_CDS: -2.95 Total: -42.09 kcal
Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal
Total: -67.14 0.88 -66.26 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000596275653.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.937 kcal
(2) G-P(sol) polarization free energy of solvation -67.137 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.074 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.255 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.192 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds