Wall clock time and date at job start Tue Mar 31 2020 13:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47150 * 2 1 4 4 C 1.53002 * 109.47205 * 120.00105 * 2 1 3 5 5 O 1.42897 * 109.46886 * 55.00218 * 4 2 1 6 6 C 1.42893 * 114.00050 * 180.02562 * 5 4 2 7 7 H 1.09001 * 110.75621 * 327.98374 * 6 5 4 8 8 C 1.55570 * 110.83894 * 204.30418 * 6 5 4 9 9 C 1.54943 * 100.82615 * 207.68544 * 8 6 5 10 10 O 1.43643 * 105.22629 * 36.44116 * 9 8 6 11 11 C 1.43239 * 109.96891 * 335.52649 * 10 9 8 12 12 N 1.46505 * 109.47382 * 240.00357 * 2 1 3 13 13 C 1.34775 * 119.99951 * 85.00280 * 12 2 1 14 14 O 1.21610 * 120.00113 * 359.97438 * 13 12 2 15 15 C 1.47431 * 119.99719 * 180.02562 * 13 12 2 16 16 C 1.39221 * 120.28366 * 355.34527 * 15 13 12 17 17 C 1.38222 * 120.09202 * 179.97438 * 16 15 13 18 18 C 1.38827 * 120.67655 * 0.02562 * 17 16 15 19 19 C 1.37599 * 120.56866 * 359.97438 * 18 17 16 20 20 C 1.40699 * 119.88367 * 359.74917 * 19 18 17 21 21 C 1.40892 * 120.33175 * 180.25015 * 20 19 18 22 22 H 1.07995 * 119.99985 * 215.81279 * 21 20 19 23 23 C 1.40270 * 119.99991 * 35.81022 * 21 20 19 24 24 N 1.30636 * 120.00025 * 8.98364 * 23 21 20 25 25 Si 1.86796 * 120.00344 * 188.98332 * 23 21 20 26 26 H 1.48500 * 109.47090 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47159 * 119.99769 * 25 23 21 28 28 H 1.48495 * 109.47500 * 240.00173 * 25 23 21 29 29 H 1.08999 * 109.47326 * 300.00006 * 1 2 3 30 30 H 1.09008 * 109.47032 * 59.99563 * 1 2 3 31 31 H 1.08999 * 109.46957 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46746 * 295.00178 * 4 2 1 33 33 H 1.09001 * 109.46949 * 174.99993 * 4 2 1 34 34 H 1.09003 * 111.22334 * 89.79121 * 8 6 5 35 35 H 1.08996 * 111.13667 * 325.54623 * 8 6 5 36 36 H 1.09000 * 110.31349 * 277.47661 * 9 8 6 37 37 H 1.08998 * 110.30862 * 155.40749 * 9 8 6 38 38 H 1.09002 * 109.83305 * 121.22543 * 11 10 9 39 39 H 1.09000 * 109.82784 * 242.10375 * 11 10 9 40 40 H 0.97001 * 119.99892 * 265.00315 * 12 2 1 41 41 H 1.07995 * 119.95731 * 359.95940 * 16 15 13 42 42 H 1.08001 * 119.66376 * 180.02562 * 17 16 15 43 43 H 1.08001 * 119.71600 * 179.97438 * 18 17 16 44 44 H 1.08001 * 120.05775 * 179.97438 * 19 18 17 45 45 H 0.96998 * 120.00406 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.4702 -2.0304 1.3093 6 6 1.8835 -2.7926 2.4451 7 1 2.9013 -2.5319 2.7357 8 6 1.7569 -4.3174 2.1642 9 6 1.5298 -4.8596 3.5978 10 8 0.7225 -3.8682 4.2525 11 6 0.9076 -2.5941 3.6247 12 7 2.0184 -0.6905 -1.1962 13 6 2.1472 -0.0181 -2.3571 14 8 1.8575 1.1617 -2.4118 15 6 2.6381 -0.7132 -3.5610 16 6 3.0617 -2.0371 -3.4836 17 6 3.5208 -2.6852 -4.6149 18 6 3.5664 -2.0291 -5.8376 19 6 3.1546 -0.7207 -5.9454 20 6 2.6775 -0.0400 -4.8102 21 6 2.2485 1.2982 -4.9110 22 1 2.4291 1.9858 -4.0981 23 6 1.5868 1.7374 -6.0672 24 7 1.2121 0.8740 -6.9732 25 14 1.2413 3.5567 -6.3116 26 1 1.7634 4.3202 -5.1498 27 1 1.9100 4.0253 -7.5520 28 1 -0.2235 3.7713 -6.4276 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1583 2.1369 33 1 3.1263 -0.7995 1.2055 34 1 2.6754 -4.7170 1.7341 35 1 0.9008 -4.5293 1.5238 36 1 2.4826 -4.9732 4.1148 37 1 1.0032 -5.8133 3.5625 38 1 -0.0479 -2.2215 3.2555 39 1 1.3285 -1.8873 4.3398 40 1 2.2490 -1.6317 -1.1527 41 1 3.0318 -2.5585 -2.5383 42 1 3.8473 -3.7124 -4.5471 43 1 3.9284 -2.5503 -6.7116 44 1 3.1940 -0.2181 -6.9006 45 1 0.7542 1.1776 -7.7726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601300865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:39 Heat of formation + Delta-G solvation = -110.114600 kcal Electronic energy + Delta-G solvation = -26776.171541 eV Core-core repulsion = 22951.332321 eV Total energy + Delta-G solvation = -3824.839221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.96997 -39.07680 -37.70821 -36.70424 -34.62199 -33.64145 -31.71669 -30.85032 -29.80841 -29.12508 -28.82570 -26.43180 -25.38385 -22.95617 -22.51705 -21.81864 -21.16556 -20.36375 -19.41339 -17.66501 -17.44116 -16.98807 -16.32169 -15.90693 -15.60920 -15.21433 -14.91888 -14.65352 -14.36087 -14.04505 -13.82089 -13.67025 -13.44041 -13.11446 -12.72434 -12.67764 -12.56860 -12.34426 -12.19304 -11.81950 -11.70113 -11.59826 -11.33224 -11.13287 -11.04900 -10.90827 -10.77995 -10.61646 -10.48711 -10.06910 -9.90463 -9.77657 -9.64393 -9.26088 -8.40572 -8.29309 -7.57371 -7.31588 -6.78018 -4.37508 2.37405 2.81565 3.11840 3.19726 3.21307 3.23213 3.65770 3.95641 3.99953 4.11372 4.19087 4.53752 4.60470 4.70988 4.79038 4.84148 4.99686 5.10094 5.23276 5.33777 5.36113 5.42300 5.55561 5.61048 5.64770 5.68151 5.77570 5.92273 6.00882 6.13238 6.27941 6.32960 6.58007 6.60942 6.65139 6.92732 6.96884 7.11706 7.19416 7.28593 7.47917 7.63706 7.90020 8.01441 8.19900 8.43825 8.70411 8.85462 8.92875 9.45226 10.18205 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.003069 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.182726 B = 9121.510025 C =10309.660695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.152 3.848 3 H 0.096 0.904 4 C 0.052 3.948 5 O -0.362 6.362 6 C 0.056 3.944 7 H 0.078 0.922 8 C -0.153 4.153 9 C 0.051 3.949 10 O -0.381 6.381 11 C 0.028 3.972 12 N -0.740 5.740 13 C 0.565 3.435 14 O -0.541 6.541 15 C -0.260 4.260 16 C -0.056 4.056 17 C -0.245 4.245 18 C -0.096 4.096 19 C -0.147 4.147 20 C 0.147 3.853 21 C -0.422 4.422 22 H 0.111 0.889 23 C 0.068 3.932 24 N -0.795 5.795 25 Si 0.915 3.085 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.395 0.605 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 -6.925 15.668 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.114 0.886 4 C -0.025 4.025 5 O -0.281 6.281 6 C -0.003 4.003 7 H 0.096 0.904 8 C -0.190 4.190 9 C -0.025 4.025 10 O -0.301 6.301 11 C -0.049 4.049 12 N -0.395 5.395 13 C 0.360 3.640 14 O -0.419 6.419 15 C -0.265 4.265 16 C -0.075 4.075 17 C -0.264 4.264 18 C -0.115 4.115 19 C -0.167 4.167 20 C 0.143 3.857 21 C -0.450 4.450 22 H 0.129 0.871 23 C -0.150 4.150 24 N -0.420 5.420 25 Si 0.740 3.260 26 H -0.180 1.180 27 H -0.199 1.199 28 H -0.200 1.200 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.133 0.867 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.005 -6.160 15.442 16.655 hybrid contribution 0.119 0.250 -0.201 0.342 sum 1.124 -5.910 15.240 16.385 Atomic orbital electron populations 1.22084 0.95290 1.02428 1.01874 1.20788 0.94770 0.96569 0.83254 0.88625 1.22993 0.97457 0.83645 0.98370 1.87999 1.69940 1.26583 1.43553 1.23696 0.97478 0.92287 0.86828 0.90411 1.23360 1.04535 0.93206 0.97948 1.23345 0.95473 0.92716 0.91001 1.88427 1.66996 1.17791 1.56851 1.23676 1.00598 0.86232 0.94417 1.46021 1.70294 1.13920 1.09298 1.18416 0.76786 0.86364 0.82465 1.90644 1.51124 1.16027 1.84149 1.19476 1.17769 0.94601 0.94611 1.20654 0.97025 0.93525 0.96325 1.20282 1.13463 0.99057 0.93631 1.20796 0.99563 0.95216 0.95904 1.21333 1.01740 0.94324 0.99256 1.17497 0.86511 0.92564 0.89142 1.20332 1.28159 0.95896 1.00623 0.87138 1.26146 0.94191 1.00180 0.94438 1.69728 1.28164 1.36185 1.07917 0.86127 0.78665 0.82138 0.79082 1.18005 1.19942 1.19978 0.92748 0.91775 0.91930 0.92118 0.92433 0.89106 0.88945 0.91979 0.89251 0.90042 0.91296 0.76996 0.89256 0.89156 0.89125 0.86706 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.29 37.15 0.35 -1.98 16 2 C 0.15 2.23 2.98 -67.93 -0.20 2.03 16 3 H 0.10 1.51 7.58 -51.92 -0.39 1.12 16 4 C 0.05 0.57 5.55 37.16 0.21 0.78 16 5 O -0.36 -4.10 8.93 -35.23 -0.31 -4.41 16 6 C 0.06 0.51 3.45 -24.64 -0.09 0.42 16 7 H 0.08 0.60 7.89 -51.93 -0.41 0.19 16 8 C -0.15 -1.25 6.91 -24.34 -0.17 -1.42 16 9 C 0.05 0.40 7.77 38.18 0.30 0.69 16 10 O -0.38 -4.05 11.36 -35.23 -0.40 -4.45 16 11 C 0.03 0.26 7.58 37.88 0.29 0.55 16 12 N -0.74 -13.08 5.01 -54.87 -0.27 -13.35 16 13 C 0.57 12.94 7.69 -12.52 -0.10 12.84 16 14 O -0.54 -13.92 13.19 5.27 0.07 -13.85 16 15 C -0.26 -6.33 5.92 -104.37 -0.62 -6.95 16 16 C -0.06 -1.20 9.52 -39.22 -0.37 -1.58 16 17 C -0.24 -5.21 10.03 -39.37 -0.39 -5.61 16 18 C -0.10 -2.17 10.01 -39.60 -0.40 -2.56 16 19 C -0.15 -3.75 8.62 -38.89 -0.34 -4.08 16 20 C 0.15 3.94 5.48 -106.54 -0.58 3.36 16 21 C -0.42 -11.59 7.78 -37.81 -0.29 -11.88 16 22 H 0.11 3.15 5.73 -52.49 -0.30 2.85 16 23 C 0.07 1.77 5.25 -17.30 -0.09 1.67 16 24 N -0.79 -20.73 11.25 55.56 0.63 -20.10 16 25 Si 0.92 19.73 29.57 -169.99 -5.03 14.70 16 26 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 31 H 0.06 0.92 7.56 -51.93 -0.39 0.53 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.40 6.37 6.44 -40.82 -0.26 6.10 16 41 H 0.09 1.60 6.42 -52.49 -0.34 1.26 16 42 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.12 2.98 6.72 -52.49 -0.35 2.63 16 45 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -30.47 368.50 -8.92 -39.39 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.65 Total: 10.22 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -2.50 Total: -13.71 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.35 Total: -33.45 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.65 Total: -22.71 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.47 -8.92 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601300865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.720 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds