Wall clock time and date at job start Tue Mar 31 2020 13:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47436 * 2 1 4 4 C 1.53002 * 109.47335 * 120.00043 * 2 1 3 5 5 O 1.42892 * 109.47111 * 54.99351 * 4 2 1 6 6 C 1.42902 * 114.00434 * 180.02562 * 5 4 2 7 7 H 1.09005 * 110.74967 * 32.01700 * 6 5 4 8 8 C 1.55299 * 110.85465 * 155.71748 * 6 5 4 9 9 C 1.54941 * 100.94383 * 152.32235 * 8 6 5 10 10 O 1.43645 * 105.13822 * 323.55594 * 9 8 6 11 11 C 1.43239 * 109.96883 * 24.42904 * 10 9 8 12 12 N 1.46499 * 109.47224 * 239.99995 * 2 1 3 13 13 C 1.34779 * 120.00447 * 84.99805 * 12 2 1 14 14 O 1.21614 * 119.99519 * 0.02562 * 13 12 2 15 15 C 1.47425 * 120.00076 * 180.02562 * 13 12 2 16 16 C 1.39227 * 120.28544 * 354.16016 * 15 13 12 17 17 C 1.38217 * 120.09322 * 179.74953 * 16 15 13 18 18 C 1.38833 * 120.67489 * 0.55602 * 17 16 15 19 19 C 1.37599 * 120.57069 * 359.70337 * 18 17 16 20 20 C 1.40706 * 119.87947 * 0.02562 * 19 18 17 21 21 C 1.40891 * 120.32801 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00538 * 145.82853 * 21 20 19 23 23 C 1.40274 * 119.99832 * 325.83369 * 21 20 19 24 24 N 1.30626 * 120.00035 * 350.76383 * 23 21 20 25 25 Si 1.86801 * 120.00094 * 170.76726 * 23 21 20 26 26 H 1.48497 * 109.47325 * 89.99703 * 25 23 21 27 27 H 1.48497 * 109.47079 * 210.00003 * 25 23 21 28 28 H 1.48503 * 109.46802 * 329.99698 * 25 23 21 29 29 H 1.09001 * 109.47436 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47146 * 300.00366 * 1 2 3 31 31 H 1.09003 * 109.47288 * 59.99591 * 1 2 3 32 32 H 1.09008 * 109.46608 * 294.99751 * 4 2 1 33 33 H 1.08995 * 109.47227 * 175.00145 * 4 2 1 34 34 H 1.08999 * 111.12641 * 270.24622 * 8 6 5 35 35 H 1.09002 * 111.11988 * 34.40452 * 8 6 5 36 36 H 1.09003 * 110.31184 * 204.64032 * 9 8 6 37 37 H 1.08999 * 110.31067 * 82.47233 * 9 8 6 38 38 H 1.09010 * 109.82898 * 238.77282 * 11 10 9 39 39 H 1.09001 * 109.82979 * 117.80397 * 11 10 9 40 40 H 0.97008 * 119.99775 * 265.00333 * 12 2 1 41 41 H 1.08000 * 119.94892 * 0.02870 * 16 15 13 42 42 H 1.08000 * 119.66349 * 180.28402 * 17 16 15 43 43 H 1.08002 * 119.71398 * 179.71737 * 18 17 16 44 44 H 1.07998 * 120.05983 * 180.02562 * 19 18 17 45 45 H 0.97010 * 120.00172 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.4701 -2.0303 1.3095 6 6 1.8835 -2.7925 2.4454 7 1 2.0664 -2.1423 3.3010 8 6 0.8345 -3.8847 2.7898 9 6 1.7327 -4.9540 3.4608 10 8 2.9698 -4.9161 2.7316 11 6 3.1359 -3.6332 2.1167 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8582 1.1618 -2.4117 15 6 2.6379 -0.7135 -3.5610 16 6 3.0847 -2.0296 -3.4787 17 6 3.5393 -2.6793 -4.6108 18 6 3.5677 -2.0291 -5.8372 19 6 3.1377 -0.7268 -5.9490 20 6 2.6649 -0.0447 -4.8128 21 6 2.2219 1.2887 -4.9166 22 1 1.4063 1.6364 -4.2999 23 6 2.8400 2.1647 -5.8212 24 7 3.9356 1.8042 -6.4344 25 14 2.0964 3.8467 -6.1488 26 1 2.6610 4.8324 -5.1923 27 1 2.4142 4.2664 -7.5374 28 1 0.6229 3.7784 -5.9773 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.7516 -0.1582 2.1370 33 1 3.1263 -0.7994 1.2056 34 1 0.0872 -3.5057 3.4869 35 1 0.3646 -4.2763 1.8876 36 1 1.2745 -5.9395 3.3774 37 1 1.9028 -4.7025 4.5076 38 1 3.2299 -3.7500 1.0369 39 1 4.0247 -3.1443 2.5156 40 1 2.2490 -1.6318 -1.1526 41 1 3.0718 -2.5450 -2.5297 42 1 3.8799 -3.7017 -4.5398 43 1 3.9303 -2.5501 -6.7110 44 1 3.1631 -0.2292 -6.9072 45 1 4.3633 2.4102 -7.0597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601300866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:42 Heat of formation + Delta-G solvation = -110.032805 kcal Electronic energy + Delta-G solvation = -26870.613822 eV Core-core repulsion = 23045.778149 eV Total energy + Delta-G solvation = -3824.835674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.96737 -39.06598 -37.69892 -36.69205 -34.61631 -33.64497 -31.71193 -30.86529 -29.79921 -29.11850 -28.76177 -26.46270 -25.37577 -22.88915 -22.57000 -21.81032 -21.15858 -20.36353 -19.37760 -17.64283 -17.43797 -16.95755 -16.32165 -16.01079 -15.37229 -15.24899 -15.17509 -14.49901 -14.25636 -14.06849 -13.83497 -13.60182 -13.44824 -13.14864 -12.88887 -12.68283 -12.46193 -12.32151 -12.07485 -11.82496 -11.74469 -11.55287 -11.39338 -11.08361 -11.01094 -10.93459 -10.78434 -10.66148 -10.49718 -10.05444 -9.88244 -9.74874 -9.64045 -9.23894 -8.37578 -8.34264 -7.55252 -7.32381 -6.77076 -4.35494 2.39588 2.84209 3.11219 3.18638 3.19868 3.25647 3.68110 3.95886 3.99604 4.11782 4.20391 4.54860 4.59311 4.70958 4.78891 4.83434 5.01692 5.11046 5.21522 5.34480 5.38443 5.41310 5.58639 5.62501 5.65172 5.68365 5.76261 5.90605 6.02971 6.12546 6.28607 6.34753 6.54283 6.64544 6.66767 6.92603 6.99190 7.13267 7.21002 7.28383 7.49841 7.66361 7.92525 8.01845 8.21224 8.44439 8.69686 8.85612 8.93166 9.45005 10.18399 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.003194 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.120133 B = 8763.102559 C = 9954.010874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.151 3.849 3 H 0.096 0.904 4 C 0.052 3.948 5 O -0.362 6.362 6 C 0.056 3.944 7 H 0.077 0.923 8 C -0.152 4.152 9 C 0.051 3.949 10 O -0.380 6.380 11 C 0.026 3.974 12 N -0.741 5.741 13 C 0.566 3.434 14 O -0.540 6.540 15 C -0.261 4.261 16 C -0.056 4.056 17 C -0.246 4.246 18 C -0.095 4.095 19 C -0.149 4.149 20 C 0.147 3.853 21 C -0.416 4.416 22 H 0.105 0.895 23 C 0.069 3.931 24 N -0.794 5.794 25 Si 0.917 3.083 26 H -0.269 1.269 27 H -0.278 1.278 28 H -0.260 1.260 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.395 0.605 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.117 0.883 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 -7.311 16.076 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.114 0.886 4 C -0.025 4.025 5 O -0.281 6.281 6 C -0.002 4.002 7 H 0.095 0.905 8 C -0.190 4.190 9 C -0.025 4.025 10 O -0.299 6.299 11 C -0.051 4.051 12 N -0.396 5.396 13 C 0.360 3.640 14 O -0.418 6.418 15 C -0.266 4.266 16 C -0.075 4.075 17 C -0.265 4.265 18 C -0.114 4.114 19 C -0.168 4.168 20 C 0.142 3.858 21 C -0.445 4.445 22 H 0.123 0.877 23 C -0.149 4.149 24 N -0.420 5.420 25 Si 0.742 3.258 26 H -0.194 1.194 27 H -0.204 1.204 28 H -0.183 1.183 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.135 0.865 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.794 -6.572 15.713 17.449 hybrid contribution 0.128 0.512 0.115 0.540 sum -3.666 -6.060 15.828 17.340 Atomic orbital electron populations 1.22070 0.95326 1.02355 1.01788 1.20789 0.94708 0.96648 0.83292 0.88598 1.22997 0.97632 0.83457 0.98410 1.87992 1.69418 1.26610 1.44101 1.23643 0.93895 0.93302 0.89387 0.90494 1.23304 0.98077 0.95206 1.02409 1.23341 0.84073 0.99768 0.95346 1.88443 1.39802 1.32908 1.68754 1.23711 0.97798 0.84018 0.99554 1.46043 1.70289 1.13863 1.09376 1.18431 0.76789 0.86340 0.82461 1.90665 1.50785 1.15869 1.84514 1.19458 1.18091 0.96098 0.92992 1.20655 0.96908 0.93603 0.96314 1.20284 1.13304 0.99199 0.93739 1.20801 0.99251 0.95321 0.96042 1.21353 1.03694 0.92909 0.98870 1.17479 0.86782 0.92664 0.88841 1.20157 1.14660 0.94303 1.15331 0.87731 1.26117 0.94063 1.01346 0.93360 1.69721 1.14240 1.37184 1.20819 0.86158 0.80807 0.81128 0.77738 1.19366 1.20365 1.18335 0.91938 0.92775 0.91875 0.92039 0.92480 0.89364 0.88957 0.89267 0.92054 0.89803 0.91187 0.76996 0.89272 0.89147 0.89132 0.86511 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.29 37.15 0.35 -1.87 16 2 C 0.15 2.22 2.98 -67.93 -0.20 2.02 16 3 H 0.10 1.53 7.58 -51.93 -0.39 1.14 16 4 C 0.05 0.57 5.55 37.16 0.21 0.78 16 5 O -0.36 -4.07 8.93 -35.23 -0.31 -4.39 16 6 C 0.06 0.51 3.45 -24.79 -0.09 0.42 16 7 H 0.08 0.57 7.89 -51.93 -0.41 0.16 16 8 C -0.15 -1.19 6.89 -24.49 -0.17 -1.36 16 9 C 0.05 0.40 7.78 38.18 0.30 0.70 16 10 O -0.38 -4.23 11.36 -35.23 -0.40 -4.63 16 11 C 0.03 0.26 7.58 37.88 0.29 0.55 16 12 N -0.74 -13.12 5.01 -54.88 -0.27 -13.40 16 13 C 0.57 13.00 7.68 -12.52 -0.10 12.90 16 14 O -0.54 -13.96 13.25 5.27 0.07 -13.89 16 15 C -0.26 -6.42 5.92 -104.37 -0.62 -7.04 16 16 C -0.06 -1.21 9.52 -39.22 -0.37 -1.59 16 17 C -0.25 -5.31 10.03 -39.37 -0.39 -5.71 16 18 C -0.10 -2.18 10.01 -39.59 -0.40 -2.57 16 19 C -0.15 -3.82 8.62 -38.88 -0.34 -4.16 16 20 C 0.15 3.95 5.51 -106.54 -0.59 3.37 16 21 C -0.42 -11.48 7.68 -37.81 -0.29 -11.77 16 22 H 0.10 2.98 5.91 -52.49 -0.31 2.67 16 23 C 0.07 1.79 5.25 -17.30 -0.09 1.70 16 24 N -0.79 -20.75 11.14 55.56 0.62 -20.13 16 25 Si 0.92 19.78 29.57 -169.99 -5.03 14.75 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 27 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 28 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 29 H 0.06 0.88 7.56 -51.93 -0.39 0.48 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.55 8.11 -51.92 -0.42 0.13 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.93 8.05 -51.92 -0.42 0.51 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.40 6.43 6.45 -40.82 -0.26 6.16 16 41 H 0.09 1.63 6.44 -52.49 -0.34 1.29 16 42 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.12 3.05 6.59 -52.49 -0.35 2.71 16 45 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -30.58 368.44 -8.93 -39.51 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.65 Total: 10.24 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.50 Total: -13.63 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.34 Total: -33.52 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.65 Total: -22.90 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.58 -8.93 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601300866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.522 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds