Wall clock time and date at job start Tue Mar 31 2020 13:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47436 * 2 1 4 4 C 1.53002 * 109.47335 * 120.00043 * 2 1 3 5 5 O 1.42892 * 109.47111 * 54.99351 * 4 2 1 6 6 C 1.42902 * 114.00434 * 180.02562 * 5 4 2 7 7 H 1.09005 * 110.74967 * 32.01700 * 6 5 4 8 8 C 1.55299 * 110.85465 * 155.71748 * 6 5 4 9 9 C 1.54941 * 100.94383 * 152.32235 * 8 6 5 10 10 O 1.43645 * 105.13822 * 323.55594 * 9 8 6 11 11 C 1.43239 * 109.96883 * 24.42904 * 10 9 8 12 12 N 1.46499 * 109.47224 * 239.99995 * 2 1 3 13 13 C 1.34779 * 120.00447 * 84.99805 * 12 2 1 14 14 O 1.21614 * 119.99519 * 0.02562 * 13 12 2 15 15 C 1.47425 * 120.00076 * 180.02562 * 13 12 2 16 16 C 1.39227 * 120.28544 * 354.16016 * 15 13 12 17 17 C 1.38217 * 120.09322 * 179.74953 * 16 15 13 18 18 C 1.38833 * 120.67489 * 0.55602 * 17 16 15 19 19 C 1.37599 * 120.57069 * 359.70337 * 18 17 16 20 20 C 1.40706 * 119.87947 * 0.02562 * 19 18 17 21 21 C 1.40891 * 120.32801 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00538 * 145.82853 * 21 20 19 23 23 C 1.40274 * 119.99832 * 325.83369 * 21 20 19 24 24 N 1.30626 * 120.00035 * 350.76383 * 23 21 20 25 25 Si 1.86801 * 120.00094 * 170.76726 * 23 21 20 26 26 H 1.48497 * 109.47325 * 89.99703 * 25 23 21 27 27 H 1.48497 * 109.47079 * 210.00003 * 25 23 21 28 28 H 1.48503 * 109.46802 * 329.99698 * 25 23 21 29 29 H 1.09001 * 109.47436 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47146 * 300.00366 * 1 2 3 31 31 H 1.09003 * 109.47288 * 59.99591 * 1 2 3 32 32 H 1.09008 * 109.46608 * 294.99751 * 4 2 1 33 33 H 1.08995 * 109.47227 * 175.00145 * 4 2 1 34 34 H 1.08999 * 111.12641 * 270.24622 * 8 6 5 35 35 H 1.09002 * 111.11988 * 34.40452 * 8 6 5 36 36 H 1.09003 * 110.31184 * 204.64032 * 9 8 6 37 37 H 1.08999 * 110.31067 * 82.47233 * 9 8 6 38 38 H 1.09010 * 109.82898 * 238.77282 * 11 10 9 39 39 H 1.09001 * 109.82979 * 117.80397 * 11 10 9 40 40 H 0.97008 * 119.99775 * 265.00333 * 12 2 1 41 41 H 1.08000 * 119.94892 * 0.02870 * 16 15 13 42 42 H 1.08000 * 119.66349 * 180.28402 * 17 16 15 43 43 H 1.08002 * 119.71398 * 179.71737 * 18 17 16 44 44 H 1.07998 * 120.05983 * 180.02562 * 19 18 17 45 45 H 0.97010 * 120.00172 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.4701 -2.0303 1.3095 6 6 1.8835 -2.7925 2.4454 7 1 2.0664 -2.1423 3.3010 8 6 0.8345 -3.8847 2.7898 9 6 1.7327 -4.9540 3.4608 10 8 2.9698 -4.9161 2.7316 11 6 3.1359 -3.6332 2.1167 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8582 1.1618 -2.4117 15 6 2.6379 -0.7135 -3.5610 16 6 3.0847 -2.0296 -3.4787 17 6 3.5393 -2.6793 -4.6108 18 6 3.5677 -2.0291 -5.8372 19 6 3.1377 -0.7268 -5.9490 20 6 2.6649 -0.0447 -4.8128 21 6 2.2219 1.2887 -4.9166 22 1 1.4063 1.6364 -4.2999 23 6 2.8400 2.1647 -5.8212 24 7 3.9356 1.8042 -6.4344 25 14 2.0964 3.8467 -6.1488 26 1 2.6610 4.8324 -5.1923 27 1 2.4142 4.2664 -7.5374 28 1 0.6229 3.7784 -5.9773 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.7516 -0.1582 2.1370 33 1 3.1263 -0.7994 1.2056 34 1 0.0872 -3.5057 3.4869 35 1 0.3646 -4.2763 1.8876 36 1 1.2745 -5.9395 3.3774 37 1 1.9028 -4.7025 4.5076 38 1 3.2299 -3.7500 1.0369 39 1 4.0247 -3.1443 2.5156 40 1 2.2490 -1.6318 -1.1526 41 1 3.0718 -2.5450 -2.5297 42 1 3.8799 -3.7017 -4.5398 43 1 3.9303 -2.5501 -6.7110 44 1 3.1631 -0.2292 -6.9072 45 1 4.3633 2.4102 -7.0597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601300866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:41 Heat of formation + Delta-G solvation = -129.710720 kcal Electronic energy + Delta-G solvation = -26871.467121 eV Core-core repulsion = 23045.778149 eV Total energy + Delta-G solvation = -3825.688972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.93421 -40.49278 -38.94211 -38.19650 -36.06806 -35.47188 -32.83635 -32.05928 -31.64634 -30.58444 -29.64586 -27.49923 -27.23205 -24.34748 -23.47520 -22.88381 -22.49603 -21.80824 -21.04109 -19.36274 -18.34756 -18.15504 -17.52282 -17.24003 -17.00678 -16.26563 -16.04902 -16.01752 -15.76668 -15.50485 -15.09847 -15.05141 -14.70849 -14.48678 -14.16568 -14.05685 -13.94977 -13.52230 -13.26788 -13.15267 -12.85890 -12.78531 -12.69075 -12.50721 -12.46274 -12.34639 -12.27609 -11.94844 -11.88193 -11.65351 -11.46554 -11.13499 -10.62736 -10.49191 -10.21842 -9.91744 -9.38479 -9.22155 -8.66438 -6.34776 0.53736 1.01930 1.33598 1.46907 1.50197 2.21375 2.32998 2.42859 2.55267 2.80603 3.02541 3.46863 3.73774 3.77500 3.90816 4.01912 4.11698 4.20868 4.30378 4.34874 4.38278 4.41177 4.50089 4.59522 4.63454 4.71281 4.76606 4.81544 4.84867 4.89844 4.95715 5.07129 5.09190 5.13127 5.25771 5.35226 5.36787 5.62866 5.75457 5.83857 5.98079 6.06557 6.11491 6.18071 6.35165 6.66295 6.82348 6.93947 7.03188 7.70764 8.31270 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.003194 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.120133 B = 8763.102559 C = 9954.010874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.143 3.857 3 H 0.081 0.919 4 C 0.062 3.938 5 O -0.377 6.377 6 C 0.056 3.944 7 H 0.101 0.899 8 C -0.148 4.148 9 C 0.047 3.953 10 O -0.406 6.406 11 C 0.023 3.977 12 N -0.722 5.722 13 C 0.561 3.439 14 O -0.577 6.577 15 C -0.281 4.281 16 C -0.054 4.054 17 C -0.238 4.238 18 C -0.092 4.092 19 C -0.178 4.178 20 C 0.115 3.885 21 C -0.456 4.456 22 H 0.082 0.918 23 C 0.031 3.969 24 N -0.824 5.824 25 Si 0.980 3.020 26 H -0.270 1.270 27 H -0.258 1.258 28 H -0.264 1.264 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.027 0.973 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.404 0.596 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.119 0.881 44 H 0.100 0.900 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -8.790 18.340 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.039 3.961 3 H 0.099 0.901 4 C -0.014 4.014 5 O -0.296 6.296 6 C -0.002 4.002 7 H 0.118 0.882 8 C -0.186 4.186 9 C -0.029 4.029 10 O -0.326 6.326 11 C -0.054 4.054 12 N -0.376 5.376 13 C 0.354 3.646 14 O -0.458 6.458 15 C -0.285 4.285 16 C -0.072 4.072 17 C -0.257 4.257 18 C -0.111 4.111 19 C -0.197 4.197 20 C 0.112 3.888 21 C -0.485 4.485 22 H 0.100 0.900 23 C -0.184 4.184 24 N -0.451 5.451 25 Si 0.801 3.199 26 H -0.195 1.195 27 H -0.181 1.181 28 H -0.188 1.188 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.046 0.954 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.241 0.759 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.137 0.863 44 H 0.118 0.882 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.780 -8.102 18.008 20.105 hybrid contribution 0.136 0.734 -0.450 0.871 sum -3.644 -7.368 17.558 19.387 Atomic orbital electron populations 1.21980 0.94758 1.02386 1.01534 1.21024 0.95154 0.96365 0.83570 0.90123 1.22862 0.97702 0.83712 0.97174 1.87965 1.69562 1.26645 1.45475 1.23797 0.93699 0.93493 0.89255 0.88165 1.23307 0.98181 0.94769 1.02322 1.23549 0.82984 1.00426 0.95946 1.88411 1.41365 1.33511 1.69289 1.23732 0.98874 0.84112 0.98671 1.45849 1.68763 1.14068 1.08888 1.18398 0.76642 0.85968 0.83585 1.90641 1.52422 1.17492 1.85288 1.19876 1.18049 0.97505 0.93114 1.21032 0.95460 0.92482 0.98276 1.20780 1.11326 1.00745 0.92839 1.21168 0.97703 0.94261 0.97923 1.21304 1.06064 0.94374 0.98001 1.17863 0.87585 0.93080 0.90316 1.20114 1.15721 0.95566 1.17078 0.89992 1.26803 0.94212 1.04495 0.92853 1.69747 1.15053 1.38611 1.21662 0.85247 0.79534 0.76709 0.78413 1.19497 1.18145 1.18767 0.91636 0.89780 0.95374 0.88886 0.91956 0.87247 0.90345 0.88396 0.90222 0.91449 0.90338 0.75925 0.85530 0.85201 0.86271 0.88187 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.29 71.98 0.67 -3.37 16 2 C 0.14 4.05 2.98 44.99 0.13 4.19 16 3 H 0.08 2.57 7.58 -2.39 -0.02 2.55 16 4 C 0.06 1.19 5.55 71.98 0.40 1.59 16 5 O -0.38 -7.38 8.93 -148.98 -1.33 -8.71 16 6 C 0.06 0.83 3.45 31.85 0.11 0.94 16 7 H 0.10 1.06 7.89 -2.38 -0.02 1.04 16 8 C -0.15 -1.89 6.89 32.05 0.22 -1.67 16 9 C 0.05 0.61 7.78 72.65 0.56 1.17 16 10 O -0.41 -8.27 11.36 -148.98 -1.69 -9.97 16 11 C 0.02 0.42 7.58 72.45 0.55 0.97 16 12 N -0.72 -25.16 5.01 -445.80 -2.23 -27.39 16 13 C 0.56 26.40 7.68 86.66 0.67 27.07 16 14 O -0.58 -31.31 13.25 -4.08 -0.05 -31.37 16 15 C -0.28 -14.00 5.92 -19.70 -0.12 -14.12 16 16 C -0.05 -2.24 9.52 22.50 0.21 -2.03 16 17 C -0.24 -9.63 10.03 22.41 0.22 -9.40 16 18 C -0.09 -4.10 10.01 22.26 0.22 -3.87 16 19 C -0.18 -9.39 8.62 22.72 0.20 -9.19 16 20 C 0.12 6.48 5.51 -21.11 -0.12 6.36 16 21 C -0.46 -26.63 7.68 23.42 0.18 -26.45 16 22 H 0.08 5.02 5.91 -2.91 -0.02 5.01 16 23 C 0.03 1.67 5.25 85.37 0.45 2.12 16 24 N -0.82 -44.76 11.14 21.88 0.24 -44.52 16 25 Si 0.98 42.21 29.57 68.60 2.03 44.24 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 28 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 29 H 0.06 1.73 7.56 -2.39 -0.02 1.72 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.26 8.11 -2.38 -0.02 1.24 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 1.40 8.05 -2.38 -0.02 1.38 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.40 12.46 6.45 -92.70 -0.60 11.86 16 41 H 0.13 4.23 6.44 -2.91 -0.02 4.21 16 42 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 43 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 44 H 0.10 5.49 6.59 -2.91 -0.02 5.47 16 45 H 0.29 14.14 8.29 -92.70 -0.77 13.37 16 Total: -1.00 -70.68 368.44 1.93 -68.75 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.40 Total: 34.66 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 4.57 Total: -25.70 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -1.99 Total: -71.91 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -3.08 Total: -50.04 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -70.68 1.93 -68.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601300866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.960 kcal (2) G-P(sol) polarization free energy of solvation -70.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds