Wall clock time and date at job start Tue Mar 31 2020 12:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47347 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99878 * 2 1 3 5 5 C 1.50697 * 109.47491 * 64.99692 * 4 2 1 6 6 O 1.20833 * 119.99747 * 0.02562 * 5 4 2 7 7 O 1.34230 * 120.00262 * 179.72204 * 5 4 2 8 8 C 1.52999 * 109.47360 * 119.99785 * 2 1 3 9 9 C 1.50705 * 109.47021 * 295.00160 * 8 2 1 10 10 O 1.21279 * 120.00039 * 359.97438 * 9 8 2 11 11 N 1.34777 * 119.99970 * 179.97438 * 9 8 2 12 12 C 1.46504 * 119.99966 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46882 * 34.99856 * 12 11 9 14 14 C 1.52994 * 109.47102 * 154.99808 * 12 11 9 15 15 C 1.50698 * 109.47454 * 295.00086 * 14 12 11 16 16 H 1.08010 * 120.00083 * 0.02562 * 15 14 12 17 17 C 1.37876 * 120.00774 * 179.97438 * 15 14 12 18 18 N 1.31522 * 119.99244 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00538 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47162 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47447 * 120.00202 * 19 17 15 22 22 H 1.48503 * 109.47094 * 239.99922 * 19 17 15 23 23 C 1.50700 * 109.46962 * 275.00100 * 12 11 9 24 24 C 1.38230 * 119.99956 * 319.72017 * 23 12 11 25 25 C 1.38232 * 119.99907 * 179.78793 * 24 23 12 26 26 C 1.38241 * 120.00058 * 0.44755 * 25 24 23 27 27 C 1.38235 * 119.99579 * 359.81126 * 26 25 24 28 28 C 1.38234 * 119.99555 * 140.00021 * 23 12 11 29 29 H 1.09001 * 109.46786 * 300.00411 * 1 2 3 30 30 H 1.08997 * 109.47107 * 60.00580 * 1 2 3 31 31 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 33 33 H 1.09000 * 109.47234 * 185.00401 * 4 2 1 34 34 H 0.96699 * 116.99771 * 180.27188 * 7 5 4 35 35 H 1.08994 * 109.47396 * 54.99496 * 8 2 1 36 36 H 1.08996 * 109.47540 * 175.00367 * 8 2 1 37 37 H 0.96994 * 120.00320 * 359.97438 * 11 9 8 38 38 H 1.09003 * 109.47330 * 55.00086 * 14 12 11 39 39 H 1.09001 * 109.47106 * 175.00402 * 14 12 11 40 40 H 0.96995 * 119.99699 * 179.97438 * 18 17 15 41 41 H 1.07994 * 120.00321 * 0.02562 * 24 23 12 42 42 H 1.08001 * 120.00613 * 180.27779 * 25 24 23 43 43 H 1.07994 * 120.00242 * 179.82620 * 26 25 24 44 44 H 1.08002 * 119.99995 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00340 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 8 1.0140 1.0834 -2.3637 7 8 1.9884 -0.3871 -3.6949 8 6 2.0401 -0.7212 1.2492 9 6 1.6414 0.0572 2.4766 10 8 1.0117 1.0875 2.3632 11 7 1.9845 -0.3917 3.7002 12 6 1.5974 0.3652 4.8933 13 1 0.6216 0.8234 4.7321 14 6 1.5253 -0.5789 6.0951 15 6 0.4192 -1.5799 5.8818 16 1 -0.1729 -1.5465 4.9791 17 6 0.1636 -2.5393 6.8385 18 7 0.8849 -2.5804 7.9375 19 14 -1.2068 -3.7806 6.5738 20 1 -1.8631 -3.5222 5.2670 21 1 -0.6397 -5.1531 6.5796 22 1 -2.2070 -3.6538 7.6642 23 6 2.6194 1.4403 5.1596 24 6 3.9649 1.1715 4.9923 25 6 4.9020 2.1589 5.2323 26 6 4.4942 3.4125 5.6486 27 6 3.1489 3.6796 5.8211 28 6 2.2114 2.6935 5.5768 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.7135 0.1481 -4.4519 35 1 1.6054 -1.7197 1.2953 36 1 3.1263 -0.7994 1.2057 37 1 2.4878 -1.2159 3.7909 38 1 2.4746 -1.1037 6.2024 39 1 1.3245 -0.0026 6.9983 40 1 0.7049 -3.2551 8.6108 41 1 4.2838 0.1912 4.6703 42 1 5.9531 1.9504 5.0973 43 1 5.2264 4.1831 5.8388 44 1 2.8302 4.6588 6.1467 45 1 1.1604 2.9022 5.7114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601985666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:28 Heat of formation + Delta-G solvation = -128.379071 kcal Electronic energy + Delta-G solvation = -26646.334574 eV Core-core repulsion = 22820.703346 eV Total energy + Delta-G solvation = -3825.631227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.56628 -39.67408 -38.54046 -36.61101 -35.59265 -34.75473 -32.74676 -31.25771 -30.46422 -29.21020 -28.65109 -27.37611 -24.85592 -22.81482 -22.28808 -21.94450 -20.68813 -19.75334 -19.56053 -18.21121 -17.24827 -16.74370 -16.25433 -16.20574 -16.14212 -15.36513 -15.24272 -14.75117 -14.55781 -14.15900 -13.89338 -13.44726 -13.43451 -13.04379 -12.90063 -12.62495 -12.53897 -12.31657 -12.11810 -11.94948 -11.76283 -11.53720 -11.18790 -11.14225 -11.01913 -10.92175 -10.74257 -10.73927 -10.58216 -10.45706 -10.43064 -9.78468 -9.34816 -9.19972 -8.54313 -8.47037 -8.37581 -8.17373 -6.10694 -4.14067 1.78840 1.80959 2.04341 2.82508 3.15730 3.24636 3.33581 3.37533 3.78432 4.24689 4.38517 4.59627 4.78271 4.87856 5.14480 5.25640 5.26100 5.27827 5.30400 5.34787 5.39017 5.49178 5.55562 5.64249 5.76752 5.88321 5.91455 5.95101 6.14272 6.19492 6.33956 6.36615 6.41606 6.45349 6.58836 6.65801 6.85114 6.86236 6.96149 7.12316 7.41284 7.48759 7.62600 7.71699 7.86344 8.15918 8.25196 8.81573 8.92255 9.51120 10.99913 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008492 B = 0.004123 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.508241 B = 6789.768058 C = 9410.194808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.062 4.062 3 H 0.087 0.913 4 C -0.111 4.111 5 C 0.476 3.524 6 O -0.506 6.506 7 O -0.522 6.522 8 C -0.139 4.139 9 C 0.510 3.490 10 O -0.544 6.544 11 N -0.702 5.702 12 C 0.184 3.816 13 H 0.086 0.914 14 C 0.024 3.976 15 C -0.519 4.519 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.070 4.070 24 C -0.108 4.108 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.408 0.592 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.400 0.600 38 H 0.024 0.976 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.349 3.925 -15.367 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.081 4.081 3 H 0.106 0.894 4 C -0.149 4.149 5 C 0.319 3.681 6 O -0.393 6.393 7 O -0.335 6.335 8 C -0.179 4.179 9 C 0.296 3.704 10 O -0.422 6.422 11 N -0.351 5.351 12 C 0.080 3.920 13 H 0.104 0.896 14 C -0.014 4.014 15 C -0.557 4.557 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.071 4.071 24 C -0.127 4.127 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.141 4.141 28 C -0.127 4.127 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.266 0.734 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.235 0.765 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.851 4.602 -14.892 17.026 hybrid contribution -0.593 -0.873 -0.399 1.128 sum 6.258 3.729 -15.291 16.937 Atomic orbital electron populations 1.22084 0.93927 1.01323 1.04425 1.20690 0.97637 0.99913 0.89899 0.89428 1.21522 1.03832 1.00248 0.89290 1.23590 0.75853 0.84077 0.84614 1.90737 1.37054 1.24643 1.86895 1.84548 1.75002 1.56608 1.17307 1.21719 1.02563 1.00607 0.93029 1.20407 0.79553 0.85694 0.84727 1.90646 1.40196 1.24816 1.86592 1.45994 1.56798 1.26987 1.05298 1.20222 0.94733 0.90592 0.86484 0.89584 1.19389 0.97901 0.93190 0.90892 1.21176 1.16573 1.13487 1.04481 0.92317 1.24993 0.96342 0.97731 0.95120 1.69973 1.39732 1.34952 1.08428 0.86548 0.82146 0.81103 0.78295 1.19721 1.21042 1.20991 1.20555 0.94986 0.95041 0.96524 1.20896 0.92631 0.98872 1.00257 1.21039 0.98966 0.93727 1.00629 1.20992 0.95781 0.96937 1.01653 1.21045 0.93275 0.98938 1.00821 1.21025 0.99626 0.92750 0.99287 0.90001 0.91740 0.93697 0.87496 0.87608 0.73382 0.88639 0.89090 0.76542 0.95769 0.94861 0.92929 0.86577 0.86775 0.86876 0.86640 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 8.68 37.16 0.32 -1.91 16 2 C -0.06 -0.75 1.68 -90.62 -0.15 -0.90 16 3 H 0.09 1.25 7.77 -51.93 -0.40 0.85 16 4 C -0.11 -0.96 5.29 -27.89 -0.15 -1.10 16 5 C 0.48 4.86 8.05 36.00 0.29 5.15 16 6 O -0.51 -6.99 14.73 -18.76 -0.28 -7.27 16 7 O -0.52 -3.96 13.42 -39.26 -0.53 -4.49 16 8 C -0.14 -1.61 5.18 -27.88 -0.14 -1.75 16 9 C 0.51 8.42 7.50 -10.98 -0.08 8.34 16 10 O -0.54 -10.91 13.63 5.56 0.08 -10.83 16 11 N -0.70 -12.02 4.04 -54.93 -0.22 -12.24 16 12 C 0.18 3.67 2.11 -69.08 -0.15 3.53 16 13 H 0.09 1.90 7.44 -51.93 -0.39 1.52 16 14 C 0.02 0.56 4.49 -27.89 -0.13 0.43 16 15 C -0.52 -13.51 8.84 -34.44 -0.30 -13.82 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 19 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 C -0.07 -1.28 4.91 -104.63 -0.51 -1.80 16 24 C -0.11 -1.79 9.32 -39.59 -0.37 -2.16 16 25 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 26 C -0.14 -1.93 10.05 -39.58 -0.40 -2.33 16 27 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 28 C -0.11 -1.90 9.67 -39.58 -0.38 -2.28 16 29 H 0.08 1.38 5.95 -51.93 -0.31 1.07 16 30 H 0.06 0.93 5.96 -51.93 -0.31 0.62 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.41 1.50 9.10 45.56 0.41 1.92 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.40 6.19 8.60 -40.82 -0.35 5.83 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.12 1.77 7.73 -52.49 -0.41 1.36 16 42 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 44 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 45 H 0.12 2.02 8.04 -52.49 -0.42 1.60 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -33.62 379.09 -8.51 -42.13 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.94 Total: 9.44 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -3.05 Total: -13.59 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.51 Total: -36.85 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.73 Total: -22.59 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.62 -8.51 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601985666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.249 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds