Wall clock time and date at job start Tue Mar 31 2020 12:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99795 * 2 1 4 4 C 1.52997 * 109.47281 * 179.97438 * 3 2 1 5 5 N 1.46510 * 109.46943 * 64.99981 * 4 3 2 6 6 C 1.37094 * 119.99824 * 270.00063 * 5 4 3 7 7 H 1.08005 * 119.99974 * 144.96092 * 6 5 4 8 8 C 1.38946 * 120.00293 * 324.95978 * 6 5 4 9 9 N 1.31413 * 120.00305 * 337.22601 * 8 6 5 10 10 Si 1.86802 * 120.00215 * 157.22529 * 8 6 5 11 11 H 1.48503 * 109.47182 * 89.99752 * 10 8 6 12 12 H 1.48495 * 109.47366 * 210.00113 * 10 8 6 13 13 H 1.48497 * 109.47075 * 330.00000 * 10 8 6 14 14 C 1.34776 * 119.99758 * 90.00224 * 5 4 3 15 15 O 1.21289 * 120.00062 * 5.09337 * 14 5 4 16 16 C 1.50702 * 119.99720 * 185.09398 * 14 5 4 17 17 C 1.52995 * 109.46877 * 173.76066 * 16 14 5 18 18 H 1.08999 * 109.47202 * 55.00358 * 17 16 14 19 19 C 1.52992 * 109.47508 * 294.99980 * 17 16 14 20 20 C 1.50703 * 109.46827 * 174.99803 * 17 16 14 21 21 O 1.21259 * 120.00067 * 30.00680 * 20 17 16 22 22 C 1.47166 * 119.99857 * 210.00089 * 20 17 16 23 23 C 1.39853 * 120.16739 * 180.02562 * 22 20 17 24 24 C 1.37884 * 119.82260 * 179.74880 * 23 22 20 25 25 C 1.38414 * 120.17276 * 0.25080 * 24 23 22 26 26 C 1.38399 * 120.34397 * 359.97438 * 25 24 23 27 27 C 1.37885 * 120.17734 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47284 * 60.00453 * 1 2 3 29 29 H 1.09003 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47688 * 299.99816 * 1 2 3 31 31 H 1.09008 * 109.47337 * 60.00079 * 3 2 1 32 32 H 1.09001 * 109.47502 * 299.99705 * 3 2 1 33 33 H 1.09004 * 109.47374 * 305.00185 * 4 3 2 34 34 H 1.08994 * 109.47558 * 184.99872 * 4 3 2 35 35 H 0.96994 * 120.00247 * 185.56112 * 9 8 6 36 36 H 1.09006 * 109.47115 * 53.75944 * 16 14 5 37 37 H 1.08999 * 109.47148 * 293.76214 * 16 14 5 38 38 H 1.09000 * 109.47229 * 60.00107 * 19 17 16 39 39 H 1.09000 * 109.47462 * 180.02562 * 19 17 16 40 40 H 1.09002 * 109.47612 * 300.00080 * 19 17 16 41 41 H 1.07993 * 120.09102 * 0.02590 * 23 22 20 42 42 H 1.07999 * 119.91570 * 180.27400 * 24 23 22 43 43 H 1.07999 * 119.82081 * 179.97438 * 25 24 23 44 44 H 1.08006 * 119.90658 * 180.02562 * 26 25 24 45 45 H 1.07994 * 120.08622 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.0979 -0.7989 -1.3346 7 1 3.8623 -1.3064 -2.2584 8 6 4.5240 -1.5276 -0.2309 9 7 5.2222 -0.9399 0.7148 10 14 4.1046 -3.3425 -0.0912 11 1 5.1777 -4.1489 -0.7264 12 1 3.9878 -3.7148 1.3416 13 1 2.8147 -3.6067 -0.7779 14 6 4.2632 1.3331 -2.3200 15 8 4.2455 2.5417 -2.2200 16 6 4.6058 0.6911 -3.6398 17 6 4.7341 1.7723 -4.7147 18 1 5.4597 2.5196 -4.3936 19 6 3.3750 2.4409 -4.9304 20 6 5.1961 1.1455 -6.0049 21 8 4.8999 -0.0019 -6.2617 22 6 6.0067 1.9261 -6.9533 23 6 6.4369 1.3481 -8.1519 24 6 7.1916 2.0877 -9.0377 25 6 7.5280 3.3971 -8.7408 26 6 7.1100 3.9746 -7.5546 27 6 6.3538 3.2485 -6.6589 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8507 0.5686 0.8427 34 1 3.9783 2.1766 0.0902 35 1 5.5883 -1.4641 1.4441 36 1 3.8172 -0.0076 -3.9195 37 1 5.5506 0.1553 -3.5488 38 1 3.0408 2.8942 -3.9972 39 1 3.4663 3.2108 -5.6965 40 1 2.6493 1.6936 -5.2516 41 1 6.1749 0.3268 -8.3852 42 1 7.5209 1.6442 -9.9658 43 1 8.1198 3.9710 -9.4385 44 1 7.3762 4.9970 -7.3302 45 1 6.0280 3.7007 -5.7339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000654655936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:20 Heat of formation + Delta-G solvation = -88.829137 kcal Electronic energy + Delta-G solvation = -27079.725573 eV Core-core repulsion = 23255.809359 eV Total energy + Delta-G solvation = -3823.916214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.15354 -38.76465 -38.03470 -36.95481 -34.85542 -33.64045 -31.51605 -31.30138 -31.03660 -29.50614 -27.03068 -25.74647 -25.06323 -24.54031 -22.93221 -22.32662 -21.30308 -19.23937 -18.75711 -17.60709 -16.61894 -16.28350 -15.65442 -15.54133 -15.38237 -15.03765 -14.86031 -14.51296 -14.42708 -14.25791 -13.98011 -13.77931 -13.62315 -13.55311 -12.98570 -12.64681 -12.26603 -12.02157 -11.93736 -11.85414 -11.75306 -11.29709 -11.18624 -11.10913 -11.02838 -10.95786 -10.65715 -10.47020 -10.36531 -10.29421 -9.96023 -9.35921 -9.11475 -9.07161 -9.05242 -8.93312 -8.35549 -7.42943 -6.27439 -3.89588 0.65165 1.25710 2.52516 3.21539 3.31369 3.38962 3.75161 3.92307 4.04892 4.26258 4.54838 4.71004 4.79893 4.85659 4.92903 5.13737 5.16973 5.27633 5.33680 5.48086 5.54760 5.68071 5.74499 5.75036 5.86804 5.88040 5.98047 6.02938 6.08564 6.12759 6.22317 6.25575 6.30673 6.32120 6.36713 6.44815 6.56666 6.67182 6.73204 6.76877 6.80449 7.32769 7.59388 7.72864 7.86326 8.05841 8.45462 9.19169 9.57931 9.98931 10.75890 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016469 B = 0.003387 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.723223 B = 8263.732829 C = 8956.532482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.055 3.945 4 C 0.108 3.892 5 N -0.427 5.427 6 C -0.326 4.326 7 H 0.088 0.912 8 C 0.053 3.947 9 N -0.866 5.866 10 Si 0.915 3.085 11 H -0.281 1.281 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.469 3.531 15 O -0.612 6.612 16 C -0.106 4.106 17 C -0.116 4.116 18 H 0.101 0.899 19 C -0.137 4.137 20 C 0.399 3.601 21 O -0.450 6.450 22 C -0.162 4.162 23 C -0.066 4.066 24 C -0.137 4.137 25 C -0.095 4.095 26 C -0.135 4.135 27 C -0.070 4.070 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.268 0.732 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 6.940 -11.894 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.023 4.023 4 C -0.016 4.016 5 N -0.143 5.143 6 C -0.453 4.453 7 H 0.106 0.894 8 C -0.153 4.153 9 N -0.503 5.503 10 Si 0.742 3.258 11 H -0.207 1.207 12 H -0.209 1.209 13 H -0.192 1.192 14 C 0.259 3.741 15 O -0.500 6.500 16 C -0.145 4.145 17 C -0.135 4.135 18 H 0.119 0.881 19 C -0.194 4.194 20 C 0.277 3.723 21 O -0.324 6.324 22 C -0.163 4.163 23 C -0.084 4.084 24 C -0.155 4.155 25 C -0.113 4.113 26 C -0.153 4.153 27 C -0.088 4.088 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.134 0.866 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.230 6.679 -11.717 13.489 hybrid contribution -0.336 -0.728 0.159 0.818 sum -0.567 5.951 -11.558 13.012 Atomic orbital electron populations 1.22645 0.83592 1.01714 0.98736 1.88170 1.17198 1.27590 1.94982 1.23022 0.96570 0.84362 0.98337 1.21522 0.89218 0.99242 0.91598 1.43329 1.55588 1.06331 1.09089 1.19301 1.45563 0.80590 0.99888 0.89409 1.25192 0.94345 0.99804 0.95918 1.69810 1.30319 1.36781 1.13378 0.86135 0.79294 0.82879 0.77541 1.20695 1.20935 1.19236 1.20243 0.80487 0.86683 0.86734 1.90466 1.59154 1.14546 1.85857 1.21228 1.04047 0.97143 0.92128 1.21355 1.00218 0.99399 0.92528 0.88113 1.21745 0.94431 0.99820 1.03453 1.22744 0.75901 0.86729 0.86964 1.90493 1.47701 1.18398 1.75819 1.20686 1.02686 0.95848 0.97048 1.21465 0.94471 1.00089 0.92362 1.21133 0.99691 0.94725 0.99913 1.21397 0.98070 0.95143 0.96707 1.21173 0.99184 1.00392 0.94517 1.21661 0.94889 0.92926 0.99343 0.95028 0.90484 0.95241 0.94390 0.94451 0.86573 0.90985 0.92125 0.89508 0.89584 0.89272 0.93139 0.93038 0.84990 0.85631 0.85820 0.85425 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.78 10.18 -35.23 -0.36 -8.14 16 3 C 0.05 1.14 6.28 37.16 0.23 1.37 16 4 C 0.11 2.57 5.48 -4.04 -0.02 2.55 16 5 N -0.43 -10.71 2.52 -114.81 -0.29 -11.00 16 6 C -0.33 -8.46 8.25 -14.94 -0.12 -8.58 16 7 H 0.09 2.25 6.85 -52.48 -0.36 1.89 16 8 C 0.05 1.37 4.95 -17.47 -0.09 1.28 16 9 N -0.87 -23.21 11.37 55.50 0.63 -22.58 16 10 Si 0.91 20.63 29.61 -169.99 -5.03 15.60 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 14 C 0.47 11.10 7.23 -10.98 -0.08 11.02 16 15 O -0.61 -14.92 13.77 5.55 0.08 -14.84 16 16 C -0.11 -2.17 3.39 -27.88 -0.09 -2.27 16 17 C -0.12 -1.98 1.81 -91.78 -0.17 -2.14 16 18 H 0.10 1.68 6.18 -51.93 -0.32 1.36 16 19 C -0.14 -2.19 8.92 37.15 0.33 -1.86 16 20 C 0.40 6.52 6.17 -30.68 -0.19 6.33 16 21 O -0.45 -8.44 16.27 5.58 0.09 -8.35 16 22 C -0.16 -2.22 5.87 -105.07 -0.62 -2.84 16 23 C -0.07 -0.81 9.60 -39.11 -0.38 -1.19 16 24 C -0.14 -1.35 10.03 -39.65 -0.40 -1.75 16 25 C -0.10 -0.86 10.04 -39.46 -0.40 -1.26 16 26 C -0.13 -1.32 10.03 -39.65 -0.40 -1.72 16 27 C -0.07 -0.83 9.37 -39.11 -0.37 -1.20 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.12 3.00 5.39 -51.93 -0.28 2.72 16 34 H 0.07 1.71 7.36 -51.93 -0.38 1.32 16 35 H 0.27 6.83 8.32 -40.82 -0.34 6.49 16 36 H 0.09 1.82 7.36 -51.93 -0.38 1.44 16 37 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 38 H 0.09 1.61 6.18 -51.93 -0.32 1.28 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.13 1.61 7.65 -52.49 -0.40 1.21 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.14 1.55 6.35 -52.49 -0.33 1.22 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -30.60 374.42 -7.44 -38.04 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.57 Total: 6.28 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.63 Total: -0.65 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.34 Total: -33.58 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.19 Total: -31.33 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.60 -7.44 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000654655936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.788 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds