Wall clock time and date at job start Tue Mar 31 2020 12:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99795 * 2 1 4 4 C 1.52997 * 109.47281 * 179.97438 * 3 2 1 5 5 N 1.46510 * 109.46943 * 64.99981 * 4 3 2 6 6 C 1.37094 * 119.99824 * 270.00063 * 5 4 3 7 7 H 1.08005 * 119.99974 * 144.96092 * 6 5 4 8 8 C 1.38946 * 120.00293 * 324.95978 * 6 5 4 9 9 N 1.31413 * 120.00305 * 337.22601 * 8 6 5 10 10 Si 1.86802 * 120.00215 * 157.22529 * 8 6 5 11 11 H 1.48503 * 109.47182 * 89.99752 * 10 8 6 12 12 H 1.48495 * 109.47366 * 210.00113 * 10 8 6 13 13 H 1.48497 * 109.47075 * 330.00000 * 10 8 6 14 14 C 1.34776 * 119.99758 * 90.00224 * 5 4 3 15 15 O 1.21289 * 120.00062 * 5.09337 * 14 5 4 16 16 C 1.50702 * 119.99720 * 185.09398 * 14 5 4 17 17 C 1.52995 * 109.46877 * 173.76066 * 16 14 5 18 18 H 1.08999 * 109.47202 * 55.00358 * 17 16 14 19 19 C 1.52992 * 109.47508 * 294.99980 * 17 16 14 20 20 C 1.50703 * 109.46827 * 174.99803 * 17 16 14 21 21 O 1.21259 * 120.00067 * 30.00680 * 20 17 16 22 22 C 1.47166 * 119.99857 * 210.00089 * 20 17 16 23 23 C 1.39853 * 120.16739 * 180.02562 * 22 20 17 24 24 C 1.37884 * 119.82260 * 179.74880 * 23 22 20 25 25 C 1.38414 * 120.17276 * 0.25080 * 24 23 22 26 26 C 1.38399 * 120.34397 * 359.97438 * 25 24 23 27 27 C 1.37885 * 120.17734 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47284 * 60.00453 * 1 2 3 29 29 H 1.09003 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47688 * 299.99816 * 1 2 3 31 31 H 1.09008 * 109.47337 * 60.00079 * 3 2 1 32 32 H 1.09001 * 109.47502 * 299.99705 * 3 2 1 33 33 H 1.09004 * 109.47374 * 305.00185 * 4 3 2 34 34 H 1.08994 * 109.47558 * 184.99872 * 4 3 2 35 35 H 0.96994 * 120.00247 * 185.56112 * 9 8 6 36 36 H 1.09006 * 109.47115 * 53.75944 * 16 14 5 37 37 H 1.08999 * 109.47148 * 293.76214 * 16 14 5 38 38 H 1.09000 * 109.47229 * 60.00107 * 19 17 16 39 39 H 1.09000 * 109.47462 * 180.02562 * 19 17 16 40 40 H 1.09002 * 109.47612 * 300.00080 * 19 17 16 41 41 H 1.07993 * 120.09102 * 0.02590 * 23 22 20 42 42 H 1.07999 * 119.91570 * 180.27400 * 24 23 22 43 43 H 1.07999 * 119.82081 * 179.97438 * 25 24 23 44 44 H 1.08006 * 119.90658 * 180.02562 * 26 25 24 45 45 H 1.07994 * 120.08622 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.0979 -0.7989 -1.3346 7 1 3.8623 -1.3064 -2.2584 8 6 4.5240 -1.5276 -0.2309 9 7 5.2222 -0.9399 0.7148 10 14 4.1046 -3.3425 -0.0912 11 1 5.1777 -4.1489 -0.7264 12 1 3.9878 -3.7148 1.3416 13 1 2.8147 -3.6067 -0.7779 14 6 4.2632 1.3331 -2.3200 15 8 4.2455 2.5417 -2.2200 16 6 4.6058 0.6911 -3.6398 17 6 4.7341 1.7723 -4.7147 18 1 5.4597 2.5196 -4.3936 19 6 3.3750 2.4409 -4.9304 20 6 5.1961 1.1455 -6.0049 21 8 4.8999 -0.0019 -6.2617 22 6 6.0067 1.9261 -6.9533 23 6 6.4369 1.3481 -8.1519 24 6 7.1916 2.0877 -9.0377 25 6 7.5280 3.3971 -8.7408 26 6 7.1100 3.9746 -7.5546 27 6 6.3538 3.2485 -6.6589 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8507 0.5686 0.8427 34 1 3.9783 2.1766 0.0902 35 1 5.5883 -1.4641 1.4441 36 1 3.8172 -0.0076 -3.9195 37 1 5.5506 0.1553 -3.5488 38 1 3.0408 2.8942 -3.9972 39 1 3.4663 3.2108 -5.6965 40 1 2.6493 1.6936 -5.2516 41 1 6.1749 0.3268 -8.3852 42 1 7.5209 1.6442 -9.9658 43 1 8.1198 3.9710 -9.4385 44 1 7.3762 4.9970 -7.3302 45 1 6.0280 3.7007 -5.7339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000654655936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:19 Heat of formation + Delta-G solvation = -105.540575 kcal Electronic energy + Delta-G solvation = -27080.450235 eV Core-core repulsion = 23255.809359 eV Total energy + Delta-G solvation = -3824.640876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41345 -40.42200 -39.15524 -38.55470 -36.68937 -35.18122 -33.49222 -32.29884 -31.87217 -31.17161 -28.59196 -27.26754 -26.50782 -26.14136 -24.10474 -23.49209 -22.64905 -20.94848 -20.20079 -18.94537 -18.27968 -17.82211 -17.14589 -17.05277 -16.61579 -16.46336 -16.30992 -16.03951 -15.93469 -15.76256 -15.32767 -15.20045 -14.92571 -14.63564 -14.26518 -13.99967 -13.65762 -13.55534 -13.46087 -13.36131 -13.04757 -12.87510 -12.71377 -12.57643 -12.51093 -12.45523 -12.11760 -12.08449 -12.02689 -11.85409 -11.70108 -11.01813 -10.64040 -10.51262 -10.23097 -9.93704 -9.92939 -9.39773 -8.25613 -5.92960 -0.32713 0.44140 1.40030 1.41765 1.47415 1.58998 2.02635 2.35199 2.74339 2.87292 3.01981 3.11720 3.27992 3.73706 3.88698 4.04110 4.07188 4.18854 4.21572 4.26777 4.35232 4.43462 4.50168 4.51828 4.54095 4.61619 4.62026 4.64269 4.74552 4.79605 4.81689 4.87034 4.94185 5.00009 5.05877 5.16561 5.31037 5.39081 5.40795 5.48578 5.51400 5.57953 5.97793 6.04199 6.44171 6.45981 6.47650 7.19499 7.64021 8.04082 8.77968 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016469 B = 0.003387 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.723223 B = 8263.732829 C = 8956.532482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.066 3.934 4 C 0.106 3.894 5 N -0.440 5.440 6 C -0.337 4.337 7 H 0.084 0.916 8 C 0.016 3.984 9 N -0.892 5.892 10 Si 0.972 3.028 11 H -0.275 1.275 12 H -0.280 1.280 13 H -0.268 1.268 14 C 0.462 3.538 15 O -0.621 6.621 16 C -0.097 4.097 17 C -0.111 4.111 18 H 0.105 0.895 19 C -0.129 4.129 20 C 0.405 3.595 21 O -0.486 6.486 22 C -0.188 4.188 23 C -0.080 4.080 24 C -0.135 4.135 25 C -0.083 4.083 26 C -0.134 4.134 27 C -0.078 4.078 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.271 0.729 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.124 0.876 42 H 0.153 0.847 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.027 7.970 -13.567 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.012 4.012 4 C -0.018 4.018 5 N -0.157 5.157 6 C -0.465 4.465 7 H 0.101 0.899 8 C -0.186 4.186 9 N -0.531 5.531 10 Si 0.797 3.203 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.192 1.192 14 C 0.253 3.747 15 O -0.510 6.510 16 C -0.137 4.137 17 C -0.131 4.131 18 H 0.123 0.877 19 C -0.187 4.187 20 C 0.285 3.715 21 O -0.363 6.363 22 C -0.189 4.189 23 C -0.099 4.099 24 C -0.153 4.153 25 C -0.101 4.101 26 C -0.152 4.152 27 C -0.096 4.096 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.142 0.858 42 H 0.171 0.829 43 H 0.178 0.822 44 H 0.174 0.826 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.019 7.730 -13.392 15.463 hybrid contribution -0.367 -0.945 0.632 1.195 sum -0.386 6.785 -12.760 14.457 Atomic orbital electron populations 1.22877 0.80852 1.03159 1.00285 1.88097 1.20260 1.27857 1.95282 1.22818 0.94349 0.84597 0.99421 1.21483 0.91639 0.98093 0.90569 1.43533 1.56080 1.06355 1.09760 1.19415 1.45824 0.81171 1.00066 0.89861 1.25867 0.93959 1.03325 0.95482 1.69899 1.31114 1.38146 1.13901 0.85260 0.78982 0.78599 0.77482 1.20042 1.20565 1.19222 1.20717 0.79914 0.86692 0.87404 1.90441 1.59434 1.14891 1.86218 1.21130 1.02843 0.97906 0.91829 1.21326 1.01198 0.98377 0.92179 0.87652 1.21651 0.93481 1.00275 1.03249 1.22833 0.75457 0.86344 0.86825 1.90474 1.49500 1.19807 1.76534 1.20491 1.04288 0.96687 0.97410 1.21561 0.95440 1.00228 0.92624 1.21470 0.98513 0.95073 1.00234 1.21870 0.96745 0.94780 0.96669 1.21541 0.97999 1.01479 0.94171 1.21768 0.95468 0.92300 1.00056 0.94142 0.89187 0.92919 0.91542 0.94875 0.88598 0.91759 0.91950 0.90399 0.90803 0.91317 0.90179 0.93360 0.85845 0.82920 0.82181 0.82649 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.90 10.18 -148.98 -1.52 -18.42 16 3 C 0.07 2.72 6.28 71.98 0.45 3.17 16 4 C 0.11 5.17 5.48 86.38 0.47 5.65 16 5 N -0.44 -22.77 2.52 -635.53 -1.60 -24.37 16 6 C -0.34 -17.97 8.25 84.04 0.69 -17.27 16 7 H 0.08 4.42 6.85 -2.91 -0.02 4.40 16 8 C 0.02 0.86 4.95 84.93 0.42 1.28 16 9 N -0.89 -48.80 11.37 21.66 0.25 -48.56 16 10 Si 0.97 42.67 29.61 68.60 2.03 44.71 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 14 C 0.46 22.61 7.23 87.66 0.63 23.24 16 15 O -0.62 -30.96 13.77 -3.06 -0.04 -31.00 16 16 C -0.10 -4.17 3.39 29.85 0.10 -4.07 16 17 C -0.11 -3.90 1.81 -11.54 -0.02 -3.92 16 18 H 0.11 3.57 6.18 -2.39 -0.01 3.56 16 19 C -0.13 -4.15 8.92 71.98 0.64 -3.51 16 20 C 0.41 13.57 6.17 28.03 0.17 13.74 16 21 O -0.49 -19.01 16.27 -2.96 -0.05 -19.05 16 22 C -0.19 -5.10 5.87 -20.15 -0.12 -5.22 16 23 C -0.08 -1.92 9.60 22.58 0.22 -1.71 16 24 C -0.14 -2.29 10.03 22.23 0.22 -2.07 16 25 C -0.08 -1.16 10.04 22.35 0.22 -0.94 16 26 C -0.13 -2.18 10.03 22.22 0.22 -1.96 16 27 C -0.08 -1.73 9.37 22.58 0.21 -1.52 16 28 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 5.10 5.39 -2.39 -0.01 5.09 16 34 H 0.06 3.14 7.36 -2.39 -0.02 3.12 16 35 H 0.27 13.99 8.32 -92.71 -0.77 13.22 16 36 H 0.08 3.45 7.36 -2.38 -0.02 3.43 16 37 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.07 2.50 6.18 -2.39 -0.01 2.49 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.12 3.07 7.65 -2.91 -0.02 3.05 16 42 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 44 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.14 2.96 6.35 -2.91 -0.02 2.94 16 Total: -1.00 -67.74 374.42 5.85 -61.88 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.99 Total: 27.91 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.80 Total: 6.91 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -1.35 Total: -72.92 kcal Atomic # 8 Polarization: -66.87 SS G_CDS: -1.61 Total: -68.48 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.71 kcal Total: -67.74 5.85 -61.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000654655936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.658 kcal (2) G-P(sol) polarization free energy of solvation -67.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds