Wall clock time and date at job start Tue Mar 31 2020 12:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.46030 * 2 1 4 4 C 1.54804 * 109.45773 * 119.97422 * 2 1 3 5 5 O 1.38009 * 109.47965 * 52.13971 * 4 2 1 6 6 C 1.42156 * 119.43836 * 63.43953 * 5 4 2 7 7 C 1.51532 * 108.74826 * 272.75876 * 6 5 4 8 8 C 1.53577 * 109.57931 * 91.40113 * 7 6 5 9 9 N 1.45118 * 109.45872 * 240.04215 * 2 1 3 10 10 C 1.34778 * 118.75766 * 149.25733 * 9 2 1 11 11 O 1.21277 * 119.99913 * 0.02562 * 10 9 2 12 12 C 1.50698 * 120.00166 * 179.97438 * 10 9 2 13 13 C 1.50702 * 109.47287 * 180.02562 * 12 10 9 14 14 C 1.38317 * 119.96801 * 89.99965 * 13 12 10 15 15 C 1.38285 * 120.13930 * 180.02562 * 14 13 12 16 16 C 1.38115 * 120.06709 * 359.97438 * 15 14 13 17 17 C 1.38857 * 119.93492 * 0.02562 * 16 15 14 18 18 O 1.35748 * 120.07348 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99859 * 5.58644 * 18 17 16 20 20 H 1.08000 * 120.00022 * 5.28079 * 19 18 17 21 21 C 1.38655 * 120.00020 * 185.26945 * 19 18 17 22 22 N 1.31561 * 120.00071 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99921 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47028 * 89.99638 * 23 21 19 25 25 H 1.48503 * 109.46747 * 209.99470 * 23 21 19 26 26 H 1.48495 * 109.47214 * 329.99575 * 23 21 19 27 27 C 1.38083 * 119.96231 * 269.73020 * 13 12 10 28 28 H 1.08998 * 109.47200 * 320.39124 * 1 2 3 29 29 H 1.08999 * 109.47113 * 80.39014 * 1 2 3 30 30 H 1.08998 * 109.47556 * 200.39129 * 1 2 3 31 31 H 1.09002 * 109.46851 * 292.13891 * 4 2 1 32 32 H 1.09006 * 109.46827 * 172.14653 * 4 2 1 33 33 H 1.09001 * 109.59107 * 152.98350 * 6 5 4 34 34 H 1.08998 * 109.59228 * 32.53712 * 6 5 4 35 35 H 1.08998 * 109.45849 * 211.43297 * 7 6 5 36 36 H 1.08996 * 109.45842 * 331.37049 * 7 6 5 37 37 H 1.09001 * 109.16702 * 80.42280 * 8 7 6 38 38 H 1.09001 * 109.16701 * 199.61895 * 8 7 6 39 39 H 1.08999 * 109.47536 * 299.99987 * 12 10 9 40 40 H 1.08996 * 109.46992 * 60.00226 * 12 10 9 41 41 H 1.08000 * 119.93204 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.96278 * 180.02562 * 15 14 13 43 43 H 1.08001 * 120.03658 * 180.02562 * 16 15 14 44 44 H 0.96997 * 120.00258 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.03748 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0457 -0.7292 1.2644 5 8 1.4460 -1.9688 1.3575 6 6 1.6861 -2.9388 0.3464 7 6 0.6824 -2.7367 -0.7706 8 6 1.2690 -1.7852 -1.8238 9 7 2.0134 -0.6833 -1.1855 10 6 3.1869 -0.2964 -1.7237 11 8 3.8179 0.6070 -1.2170 12 6 3.7156 -0.9870 -2.9544 13 6 5.0329 -0.3707 -3.3495 14 6 6.2139 -0.8784 -2.8392 15 6 7.4246 -0.3153 -3.1990 16 6 7.4578 0.7561 -4.0699 17 6 6.2739 1.2682 -4.5839 18 8 6.3033 2.3216 -5.4397 19 6 7.5169 2.7505 -5.8410 20 1 8.4045 2.2080 -5.5509 21 6 7.6253 3.8880 -6.6265 22 7 8.8096 4.3068 -7.0177 23 14 6.0901 4.8266 -7.1280 24 1 5.7873 5.8618 -6.1073 25 1 6.3162 5.4789 -8.4428 26 1 4.9464 3.8852 -7.2326 27 6 5.0598 0.6968 -4.2250 28 1 -0.3633 0.7917 0.6552 29 1 -0.3633 0.1716 -1.0132 30 1 -0.3634 -0.9632 0.3581 31 1 1.8015 -0.1402 2.1485 32 1 3.1266 -0.8526 1.1972 33 1 1.5711 -3.9388 0.7646 34 1 2.6966 -2.8175 -0.0438 35 1 0.4570 -3.6970 -1.2344 36 1 -0.2328 -2.3071 -0.3631 37 1 1.9430 -2.3429 -2.4740 38 1 0.4581 -1.3699 -2.4222 39 1 3.8596 -2.0465 -2.7429 40 1 3.0016 -0.8729 -3.7699 41 1 6.1905 -1.7159 -2.1577 42 1 8.3451 -0.7143 -2.7991 43 1 8.4037 1.1953 -4.3508 44 1 8.8855 5.1028 -7.5668 45 1 4.1376 1.0898 -4.6268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760583593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:37 Heat of formation + Delta-G solvation = -67.222614 kcal Electronic energy + Delta-G solvation = -27157.850273 eV Core-core repulsion = 23334.870989 eV Total energy + Delta-G solvation = -3822.979284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01851 -39.31821 -38.56460 -36.65458 -35.77586 -33.69889 -32.42006 -32.17776 -30.79402 -29.39018 -27.16627 -27.00853 -26.22651 -25.13861 -22.37864 -21.79638 -21.57253 -20.49237 -19.13781 -17.68869 -17.52129 -17.15379 -16.84147 -16.59187 -16.43818 -15.43280 -15.16176 -14.87891 -14.73552 -14.16181 -14.05160 -13.74664 -13.56492 -13.43116 -13.26790 -13.11772 -12.74962 -12.44971 -12.41873 -12.21456 -12.10017 -11.93306 -11.70616 -11.58931 -11.31764 -11.27110 -10.82742 -10.77857 -10.70889 -10.56882 -10.12539 -9.93617 -9.73358 -9.38168 -8.84073 -8.75583 -8.11974 -7.33177 -6.38202 -4.04750 2.02686 2.31160 2.64115 2.83057 3.24055 3.28628 3.42611 3.45575 4.26814 4.31367 4.36006 4.43323 4.62642 4.67465 4.71816 4.77856 4.91879 4.95391 5.06377 5.10869 5.16293 5.19489 5.29210 5.32166 5.36213 5.37110 5.49334 5.55052 5.59844 5.61923 5.70044 5.77330 5.85564 6.00658 6.14846 6.28007 6.46470 6.55564 6.81286 7.11923 7.14182 7.23906 7.31448 7.34807 7.63445 7.83541 8.07618 8.18748 8.97483 9.60697 10.69744 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.002932 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.967292 B = 9547.902408 C =10133.980261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 H 0.098 0.902 4 C 0.066 3.934 5 O -0.387 6.387 6 C 0.073 3.927 7 C -0.175 4.175 8 C 0.104 3.896 9 N -0.616 5.616 10 C 0.510 3.490 11 O -0.515 6.515 12 C -0.093 4.093 13 C -0.036 4.036 14 C -0.188 4.188 15 C -0.076 4.076 16 C -0.217 4.217 17 C 0.161 3.839 18 O -0.219 6.219 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.175 4.175 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.133 0.867 44 H 0.279 0.721 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.845 -15.732 12.933 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.003 4.003 3 H 0.116 0.884 4 C -0.013 4.013 5 O -0.305 6.305 6 C -0.004 4.004 7 C -0.213 4.213 8 C -0.018 4.018 9 N -0.352 5.352 10 C 0.298 3.702 11 O -0.389 6.389 12 C -0.133 4.133 13 C -0.036 4.036 14 C -0.207 4.207 15 C -0.094 4.094 16 C -0.236 4.236 17 C 0.109 3.891 18 O -0.125 6.125 19 C -0.464 4.464 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.194 4.194 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.671 -14.960 13.104 26.604 hybrid contribution -0.197 0.602 -0.594 0.869 sum -17.868 -14.357 12.510 26.113 Atomic orbital electron populations 1.22240 0.93901 1.03545 1.02402 1.21900 0.95192 0.98108 0.85083 0.88416 1.22523 0.96734 0.84308 0.97721 1.86245 1.72231 1.23265 1.48737 1.22198 0.98016 0.91691 0.88448 1.22709 1.01049 1.00290 0.97277 1.21936 0.96883 0.87825 0.95202 1.48114 1.22172 1.35975 1.28935 1.20862 0.80220 0.83640 0.85478 1.90754 1.56660 1.29287 1.62190 1.20652 0.96505 1.00146 0.95976 1.18667 0.92619 0.95681 0.96656 1.20393 0.92160 1.03318 1.04851 1.20732 0.96942 0.95295 0.96413 1.21298 0.98924 1.00467 1.02929 1.19012 0.93220 0.87876 0.89009 1.83582 1.32898 1.41815 1.54162 1.20759 0.82682 1.11174 1.31745 0.87689 1.24454 0.97841 0.95790 0.95910 1.69649 1.22410 1.24467 1.35448 0.86188 0.82845 0.80031 0.77884 1.19910 1.20794 1.18403 1.19929 0.95887 0.99313 1.04262 0.91631 0.92114 0.90308 0.87899 0.93511 0.89208 0.92848 0.89609 0.89167 0.89502 0.91368 0.88453 0.88331 0.87867 0.87176 0.84972 0.91108 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 8.22 37.16 0.31 -0.98 16 2 C 0.10 1.03 2.82 -67.72 -0.19 0.84 16 3 H 0.10 1.21 7.27 -51.93 -0.38 0.83 16 4 C 0.07 0.64 6.36 38.11 0.24 0.89 16 5 O -0.39 -3.63 8.92 -26.51 -0.24 -3.86 16 6 C 0.07 0.53 6.38 36.42 0.23 0.77 16 7 C -0.18 -0.99 5.55 -27.17 -0.15 -1.14 16 8 C 0.10 0.72 5.18 -3.19 -0.02 0.71 16 9 N -0.62 -6.45 2.11 -164.88 -0.35 -6.80 16 10 C 0.51 7.17 7.62 -10.99 -0.08 7.09 16 11 O -0.52 -9.70 15.46 5.56 0.09 -9.61 16 12 C -0.09 -1.18 4.17 -29.03 -0.12 -1.30 16 13 C -0.04 -0.63 4.37 -104.65 -0.46 -1.08 16 14 C -0.19 -3.31 9.70 -39.54 -0.38 -3.69 16 15 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 16 C -0.22 -4.90 9.14 -39.40 -0.36 -5.26 16 17 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 18 O -0.22 -5.99 8.59 0.05 0.00 -5.99 16 19 C -0.39 -11.22 9.90 30.89 0.31 -10.92 16 20 H 0.11 3.09 5.52 -52.49 -0.29 2.81 16 21 C 0.06 1.81 5.49 -17.51 -0.10 1.71 16 22 N -0.88 -25.95 13.96 55.48 0.77 -25.17 16 23 Si 0.90 22.22 28.62 -169.99 -4.86 17.35 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 27 C -0.17 -3.64 9.65 -39.39 -0.38 -4.02 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.48 7.53 -51.93 -0.39 0.08 16 30 H 0.08 0.58 4.35 -51.93 -0.23 0.35 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.45 7.40 -51.93 -0.38 0.06 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.54 5.20 -51.93 -0.27 0.27 16 37 H 0.09 0.50 5.88 -51.93 -0.31 0.20 16 38 H 0.07 0.42 7.76 -51.93 -0.40 0.02 16 39 H 0.10 0.94 7.35 -51.93 -0.38 0.56 16 40 H 0.10 1.06 7.98 -51.93 -0.41 0.64 16 41 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.13 3.11 5.71 -52.49 -0.30 2.81 16 44 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -33.78 355.36 -7.30 -41.09 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.26 Total: 2.25 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -1.81 Total: -14.61 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.43 Total: -31.97 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.15 Total: -19.47 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.86 Total: 17.35 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.78 -7.30 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760583593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.135 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds