Wall clock time and date at job start Tue Mar 31 2020 12:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.46030 * 2 1 4 4 C 1.54804 * 109.45773 * 119.97422 * 2 1 3 5 5 O 1.38009 * 109.47965 * 52.13971 * 4 2 1 6 6 C 1.42156 * 119.43836 * 63.43953 * 5 4 2 7 7 C 1.51532 * 108.74826 * 272.75876 * 6 5 4 8 8 C 1.53577 * 109.57931 * 91.40113 * 7 6 5 9 9 N 1.45118 * 109.45872 * 240.04215 * 2 1 3 10 10 C 1.34778 * 118.75766 * 149.25733 * 9 2 1 11 11 O 1.21277 * 119.99913 * 0.02562 * 10 9 2 12 12 C 1.50698 * 120.00166 * 179.97438 * 10 9 2 13 13 C 1.50702 * 109.47287 * 180.02562 * 12 10 9 14 14 C 1.38317 * 119.96801 * 89.99965 * 13 12 10 15 15 C 1.38285 * 120.13930 * 180.02562 * 14 13 12 16 16 C 1.38115 * 120.06709 * 359.97438 * 15 14 13 17 17 C 1.38857 * 119.93492 * 0.02562 * 16 15 14 18 18 O 1.35748 * 120.07348 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99859 * 5.58644 * 18 17 16 20 20 H 1.08000 * 120.00022 * 5.28079 * 19 18 17 21 21 C 1.38655 * 120.00020 * 185.26945 * 19 18 17 22 22 N 1.31561 * 120.00071 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99921 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47028 * 89.99638 * 23 21 19 25 25 H 1.48503 * 109.46747 * 209.99470 * 23 21 19 26 26 H 1.48495 * 109.47214 * 329.99575 * 23 21 19 27 27 C 1.38083 * 119.96231 * 269.73020 * 13 12 10 28 28 H 1.08998 * 109.47200 * 320.39124 * 1 2 3 29 29 H 1.08999 * 109.47113 * 80.39014 * 1 2 3 30 30 H 1.08998 * 109.47556 * 200.39129 * 1 2 3 31 31 H 1.09002 * 109.46851 * 292.13891 * 4 2 1 32 32 H 1.09006 * 109.46827 * 172.14653 * 4 2 1 33 33 H 1.09001 * 109.59107 * 152.98350 * 6 5 4 34 34 H 1.08998 * 109.59228 * 32.53712 * 6 5 4 35 35 H 1.08998 * 109.45849 * 211.43297 * 7 6 5 36 36 H 1.08996 * 109.45842 * 331.37049 * 7 6 5 37 37 H 1.09001 * 109.16702 * 80.42280 * 8 7 6 38 38 H 1.09001 * 109.16701 * 199.61895 * 8 7 6 39 39 H 1.08999 * 109.47536 * 299.99987 * 12 10 9 40 40 H 1.08996 * 109.46992 * 60.00226 * 12 10 9 41 41 H 1.08000 * 119.93204 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.96278 * 180.02562 * 15 14 13 43 43 H 1.08001 * 120.03658 * 180.02562 * 16 15 14 44 44 H 0.96997 * 120.00258 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.03748 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0457 -0.7292 1.2644 5 8 1.4460 -1.9688 1.3575 6 6 1.6861 -2.9388 0.3464 7 6 0.6824 -2.7367 -0.7706 8 6 1.2690 -1.7852 -1.8238 9 7 2.0134 -0.6833 -1.1855 10 6 3.1869 -0.2964 -1.7237 11 8 3.8179 0.6070 -1.2170 12 6 3.7156 -0.9870 -2.9544 13 6 5.0329 -0.3707 -3.3495 14 6 6.2139 -0.8784 -2.8392 15 6 7.4246 -0.3153 -3.1990 16 6 7.4578 0.7561 -4.0699 17 6 6.2739 1.2682 -4.5839 18 8 6.3033 2.3216 -5.4397 19 6 7.5169 2.7505 -5.8410 20 1 8.4045 2.2080 -5.5509 21 6 7.6253 3.8880 -6.6265 22 7 8.8096 4.3068 -7.0177 23 14 6.0901 4.8266 -7.1280 24 1 5.7873 5.8618 -6.1073 25 1 6.3162 5.4789 -8.4428 26 1 4.9464 3.8852 -7.2326 27 6 5.0598 0.6968 -4.2250 28 1 -0.3633 0.7917 0.6552 29 1 -0.3633 0.1716 -1.0132 30 1 -0.3634 -0.9632 0.3581 31 1 1.8015 -0.1402 2.1485 32 1 3.1266 -0.8526 1.1972 33 1 1.5711 -3.9388 0.7646 34 1 2.6966 -2.8175 -0.0438 35 1 0.4570 -3.6970 -1.2344 36 1 -0.2328 -2.3071 -0.3631 37 1 1.9430 -2.3429 -2.4740 38 1 0.4581 -1.3699 -2.4222 39 1 3.8596 -2.0465 -2.7429 40 1 3.0016 -0.8729 -3.7699 41 1 6.1905 -1.7159 -2.1577 42 1 8.3451 -0.7143 -2.7991 43 1 8.4037 1.1953 -4.3508 44 1 8.8855 5.1028 -7.5668 45 1 4.1376 1.0898 -4.6268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760583593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:37 Heat of formation + Delta-G solvation = -88.690185 kcal Electronic energy + Delta-G solvation = -27158.781177 eV Core-core repulsion = 23334.870989 eV Total energy + Delta-G solvation = -3823.910188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.88344 -40.89254 -39.69414 -38.29293 -36.64277 -34.54184 -34.37080 -33.43534 -31.72708 -31.03952 -28.44475 -27.65873 -27.20554 -26.89727 -23.63284 -23.13252 -22.40441 -21.82075 -20.09029 -19.62625 -18.81727 -18.44636 -17.59507 -17.38157 -17.24562 -16.89143 -16.67060 -16.13144 -15.85113 -15.68374 -15.58750 -15.11626 -14.84868 -14.46641 -14.29082 -14.12954 -14.00241 -13.89695 -13.86009 -13.20481 -13.07882 -12.92590 -12.82420 -12.59131 -12.52392 -12.44225 -12.33076 -12.24518 -11.94179 -11.87781 -11.36656 -11.22083 -10.95228 -10.83349 -10.59247 -9.69024 -9.59655 -9.09169 -8.52372 -6.25036 0.45818 0.67367 1.27659 1.32805 1.48747 1.60734 1.96886 2.25842 2.74233 2.82608 3.03454 3.08141 3.61843 3.74340 3.80806 3.91110 4.03561 4.03995 4.15711 4.19367 4.27499 4.30507 4.38225 4.51079 4.51854 4.56250 4.61571 4.66485 4.67286 4.78040 4.83211 4.86385 4.93137 5.02218 5.13016 5.14997 5.21942 5.37356 5.42085 5.61899 5.68794 5.70685 5.74152 5.88991 6.20375 6.31418 6.62472 6.82018 7.18761 7.56834 8.59624 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.002932 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.967292 B = 9547.902408 C =10133.980261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.097 3.903 3 H 0.068 0.932 4 C 0.074 3.926 5 O -0.394 6.394 6 C 0.063 3.937 7 C -0.167 4.167 8 C 0.092 3.908 9 N -0.605 5.605 10 C 0.506 3.494 11 O -0.577 6.577 12 C -0.089 4.089 13 C -0.028 4.028 14 C -0.171 4.171 15 C -0.077 4.077 16 C -0.240 4.240 17 C 0.120 3.880 18 O -0.247 6.247 19 C -0.399 4.399 20 H 0.080 0.920 21 C 0.010 3.990 22 N -0.923 5.923 23 Si 0.970 3.030 24 H -0.270 1.270 25 H -0.262 1.262 26 H -0.262 1.262 27 C -0.182 4.182 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.022 0.978 33 H 0.108 0.892 34 H 0.043 0.957 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.141 0.859 40 H 0.125 0.875 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.107 0.893 44 H 0.285 0.715 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.233 -18.815 13.891 31.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.007 4.007 3 H 0.087 0.913 4 C -0.005 4.005 5 O -0.313 6.313 6 C -0.012 4.012 7 C -0.204 4.204 8 C -0.028 4.028 9 N -0.339 5.339 10 C 0.296 3.704 11 O -0.456 6.456 12 C -0.128 4.128 13 C -0.028 4.028 14 C -0.189 4.189 15 C -0.095 4.095 16 C -0.259 4.259 17 C 0.071 3.929 18 O -0.155 6.155 19 C -0.476 4.476 20 H 0.097 0.903 21 C -0.188 4.188 22 N -0.564 5.564 23 Si 0.792 3.208 24 H -0.195 1.195 25 H -0.187 1.187 26 H -0.186 1.186 27 C -0.201 4.201 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.041 0.959 33 H 0.126 0.874 34 H 0.061 0.939 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.159 0.841 40 H 0.143 0.857 41 H 0.164 0.836 42 H 0.158 0.842 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.108 -18.117 14.081 31.178 hybrid contribution 0.781 1.244 -0.650 1.606 sum -20.327 -16.873 13.432 29.636 Atomic orbital electron populations 1.22183 0.91734 1.04398 1.02799 1.21938 0.96759 0.96707 0.85328 0.91335 1.22391 0.95247 0.84900 0.97958 1.86244 1.72058 1.23129 1.49843 1.22450 0.98040 0.91950 0.88806 1.22662 1.00118 1.01337 0.96319 1.22323 0.97516 0.87129 0.95865 1.48194 1.21108 1.36167 1.28435 1.21085 0.80800 0.82965 0.85585 1.90746 1.58713 1.32055 1.64059 1.20770 0.94131 1.01758 0.96164 1.19218 0.95409 0.93931 0.94291 1.20976 0.91267 1.03243 1.03458 1.21108 0.99326 0.93939 0.95130 1.21320 0.97628 1.02236 1.04716 1.19589 0.95174 0.88112 0.90036 1.83517 1.31575 1.43901 1.56484 1.20706 0.82927 1.11533 1.32400 0.90276 1.25272 1.00984 0.96600 0.95939 1.69728 1.24245 1.25544 1.36926 0.85237 0.78769 0.78496 0.78318 1.19520 1.18674 1.18647 1.20255 0.94864 1.00070 1.04884 0.91063 0.91839 0.89257 0.86928 0.95938 0.87384 0.93864 0.86607 0.89236 0.87547 0.89952 0.84150 0.85680 0.83626 0.84164 0.87476 0.90524 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.22 71.98 0.59 -1.45 16 2 C 0.10 1.85 2.82 45.87 0.13 1.98 16 3 H 0.07 1.73 7.27 -2.39 -0.02 1.71 16 4 C 0.07 1.36 6.36 72.60 0.46 1.82 16 5 O -0.39 -6.42 8.92 -117.78 -1.05 -7.47 16 6 C 0.06 0.69 6.38 71.50 0.46 1.15 16 7 C -0.17 -1.10 5.55 30.31 0.17 -0.93 16 8 C 0.09 0.86 5.18 86.38 0.45 1.30 16 9 N -0.61 -11.04 2.11 -793.94 -1.68 -12.71 16 10 C 0.51 13.07 7.62 87.66 0.67 13.73 16 11 O -0.58 -21.52 15.46 -3.02 -0.05 -21.57 16 12 C -0.09 -1.88 4.17 29.10 0.12 -1.76 16 13 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 14 C -0.17 -5.48 9.70 22.30 0.22 -5.26 16 15 C -0.08 -2.86 10.04 22.25 0.22 -2.64 16 16 C -0.24 -11.30 9.14 22.39 0.20 -11.10 16 17 C 0.12 6.00 6.65 22.58 0.15 6.15 16 18 O -0.25 -14.19 8.59 -22.73 -0.20 -14.39 16 19 C -0.40 -24.59 9.90 67.92 0.67 -23.92 16 20 H 0.08 5.10 5.52 -2.91 -0.02 5.08 16 21 C 0.01 0.62 5.49 84.83 0.47 1.08 16 22 N -0.92 -56.76 13.96 21.61 0.30 -56.45 16 23 Si 0.97 47.15 28.62 68.60 1.96 49.11 16 24 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 25 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 26 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 27 C -0.18 -7.52 9.65 22.39 0.22 -7.30 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.81 7.53 -2.39 -0.02 0.79 16 30 H 0.09 1.02 4.35 -2.39 -0.01 1.01 16 31 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.04 0.57 7.40 -2.39 -0.02 0.55 16 35 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.09 0.66 5.20 -2.39 -0.01 0.65 16 37 H 0.11 0.59 5.88 -2.39 -0.01 0.58 16 38 H 0.08 0.61 7.76 -2.39 -0.02 0.60 16 39 H 0.14 1.80 7.35 -2.39 -0.02 1.78 16 40 H 0.13 2.06 7.98 -2.39 -0.02 2.04 16 41 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 43 H 0.11 5.50 5.71 -2.91 -0.02 5.49 16 44 H 0.29 16.01 8.31 -92.71 -0.77 15.24 16 45 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -80.18 355.36 5.41 -74.77 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.00 Total: 16.83 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 5.11 Total: -28.12 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -1.37 Total: -69.17 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -1.29 Total: -43.42 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.96 Total: 49.11 kcal Total: -80.18 5.41 -74.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760583593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.923 kcal (2) G-P(sol) polarization free energy of solvation -80.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds