Wall clock time and date at job start Tue Mar 31 2020 12:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.67692 * 2 1 4 4 N 1.47155 * 109.67955 * 120.51951 * 2 1 3 5 5 C 1.34779 * 120.97649 * 249.16668 * 4 2 1 6 6 O 1.21591 * 120.00286 * 354.23062 * 5 4 2 7 7 C 1.47539 * 119.99487 * 174.23471 * 5 4 2 8 8 C 1.39658 * 120.19769 * 314.08735 * 7 5 4 9 9 C 1.37830 * 119.92178 * 180.25711 * 8 7 5 10 10 C 1.38580 * 120.31905 * 359.46995 * 9 8 7 11 11 C 1.38017 * 120.39954 * 0.51168 * 10 9 8 12 12 C 1.38830 * 120.07853 * 359.76586 * 11 10 9 13 13 O 1.35515 * 120.16444 * 179.97438 * 12 11 10 14 14 C 1.34813 * 117.00332 * 6.38699 * 13 12 11 15 15 H 1.08005 * 119.99365 * 5.84673 * 14 13 12 16 16 C 1.38695 * 120.00174 * 185.85295 * 14 13 12 17 17 N 1.31517 * 120.00053 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99691 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47161 * 59.99777 * 18 16 14 20 20 H 1.48504 * 109.46817 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47016 * 299.99447 * 18 16 14 22 22 C 1.47144 * 118.03870 * 69.44444 * 4 2 1 23 23 C 1.52882 * 108.60833 * 50.22221 * 22 4 2 24 24 O 1.42957 * 109.29620 * 307.93581 * 23 22 4 25 25 C 1.42959 * 114.16766 * 62.45073 * 24 23 22 26 26 C 1.53004 * 109.51526 * 177.49206 * 25 24 23 27 27 C 1.53000 * 109.55554 * 57.36542 * 25 24 23 28 28 H 1.08997 * 109.47152 * 299.47922 * 1 2 3 29 29 H 1.09000 * 109.47373 * 59.48434 * 1 2 3 30 30 H 1.09002 * 109.46733 * 179.48059 * 1 2 3 31 31 H 1.08002 * 120.04254 * 359.97438 * 8 7 5 32 32 H 1.08004 * 119.84050 * 179.69719 * 9 8 7 33 33 H 1.08006 * 119.79698 * 180.28208 * 10 9 8 34 34 H 1.08004 * 119.96252 * 179.74854 * 11 10 9 35 35 H 0.97000 * 120.00066 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.68498 * 170.00853 * 22 4 2 37 37 H 1.09006 * 109.68138 * 290.55712 * 22 4 2 38 38 H 1.09001 * 109.57783 * 187.92657 * 23 22 4 39 39 H 1.08990 * 109.40787 * 67.84782 * 23 22 4 40 40 H 1.09000 * 109.46923 * 179.74900 * 26 25 24 41 41 H 1.09001 * 109.47183 * 299.74573 * 26 25 24 42 42 H 1.08995 * 109.46835 * 59.74654 * 26 25 24 43 43 H 1.09008 * 109.47166 * 300.23172 * 27 25 24 44 44 H 1.09004 * 109.47076 * 60.22473 * 27 25 24 45 45 H 1.08998 * 109.47594 * 180.22959 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 7 2.0256 -0.7036 1.1936 5 6 2.6461 -0.0347 2.1855 6 8 2.8973 1.1480 2.0569 7 6 3.0207 -0.7376 3.4275 8 6 2.1064 -1.5836 4.0589 9 6 2.4606 -2.2333 5.2217 10 6 3.7246 -2.0601 5.7628 11 6 4.6387 -1.2275 5.1496 12 6 4.2975 -0.5605 3.9808 13 8 5.1935 0.2579 3.3775 14 6 6.4417 0.2801 3.8865 15 1 6.7152 -0.4046 4.6757 16 6 7.3744 1.1823 3.3967 17 7 7.0413 2.0158 2.4355 18 14 9.1036 1.2135 4.1026 19 1 9.7447 -0.1106 3.9005 20 1 9.9009 2.2595 3.4129 21 1 9.0400 1.5162 5.5550 22 6 1.8291 -2.1599 1.2694 23 6 2.3261 -2.7877 -0.0330 24 8 1.7169 -2.1212 -1.1413 25 6 2.0463 -0.7338 -1.2429 26 6 1.3918 -0.1434 -2.4936 27 6 3.5650 -0.5736 -1.3369 28 1 -0.3633 0.5057 0.8946 29 1 -0.3634 0.5218 -0.8853 30 1 -0.3633 -1.0277 -0.0093 31 1 1.1215 -1.7251 3.6391 32 1 1.7508 -2.8835 5.7116 33 1 3.9947 -2.5769 6.6719 34 1 5.6204 -1.0945 5.5796 35 1 7.6937 2.6465 2.0927 36 1 2.3946 -2.5635 2.1094 37 1 0.7697 -2.3812 1.3994 38 1 2.0611 -3.8448 -0.0534 39 1 3.4091 -2.6826 -0.0955 40 1 1.6398 0.9154 -2.5680 41 1 1.7594 -0.6655 -3.3770 42 1 0.3101 -0.2595 -2.4268 43 1 4.0307 -0.9960 -0.4464 44 1 3.9314 -1.0956 -2.2209 45 1 3.8149 0.4848 -1.4103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764298782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:48 Heat of formation + Delta-G solvation = -69.441756 kcal Electronic energy + Delta-G solvation = -28569.050247 eV Core-core repulsion = 24745.974734 eV Total energy + Delta-G solvation = -3823.075514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61022 -39.21768 -37.66812 -36.41899 -34.50274 -34.11766 -32.39011 -30.78991 -29.71749 -29.04013 -28.48844 -27.17785 -25.45463 -24.04039 -23.24978 -22.42652 -21.48739 -19.82120 -18.60727 -18.06668 -17.32530 -16.48726 -16.47683 -15.59888 -15.35129 -14.90192 -14.81820 -14.69725 -14.17850 -13.91666 -13.77240 -13.68494 -13.30935 -13.05505 -12.85469 -12.77115 -12.55625 -12.17016 -12.07226 -11.85365 -11.75449 -11.74289 -11.62743 -11.29410 -11.16230 -11.11170 -10.96286 -10.90840 -10.77020 -10.50421 -10.14579 -9.79151 -9.65939 -9.00277 -8.91650 -8.28300 -8.10526 -7.37208 -6.49791 -4.10545 1.75305 2.25493 3.08688 3.10557 3.13334 3.25458 3.53154 3.78296 3.89742 4.46630 4.67929 4.91544 4.97037 5.01557 5.08332 5.11329 5.24244 5.24827 5.39897 5.49461 5.51189 5.57473 5.61843 5.68229 5.70659 5.75783 5.84791 5.89896 5.93719 5.95806 6.01321 6.07039 6.12646 6.26794 6.30513 6.46515 6.52452 6.60952 6.86608 6.94232 7.01393 7.20900 7.23839 7.28452 7.63930 7.84102 7.93324 8.88956 8.92406 9.60281 10.65071 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.005016 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.341109 B = 5581.334440 C = 6922.773995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.118 3.882 3 H 0.105 0.895 4 N -0.615 5.615 5 C 0.576 3.424 6 O -0.513 6.513 7 C -0.220 4.220 8 C -0.042 4.042 9 C -0.226 4.226 10 C -0.054 4.054 11 C -0.234 4.234 12 C 0.188 3.812 13 O -0.144 6.144 14 C -0.401 4.401 15 H 0.093 0.907 16 C 0.045 3.955 17 N -0.841 5.841 18 Si 0.941 3.059 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.268 1.268 22 C 0.074 3.926 23 C 0.043 3.957 24 O -0.373 6.373 25 C 0.106 3.894 26 C -0.137 4.137 27 C -0.175 4.175 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.272 0.728 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.948 -9.078 -4.435 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.015 3.985 3 H 0.123 0.877 4 N -0.351 5.351 5 C 0.367 3.633 6 O -0.387 6.387 7 C -0.225 4.225 8 C -0.061 4.061 9 C -0.245 4.245 10 C -0.072 4.072 11 C -0.254 4.254 12 C 0.130 3.870 13 O -0.044 6.044 14 C -0.477 4.477 15 H 0.111 0.889 16 C -0.163 4.163 17 N -0.473 5.473 18 Si 0.765 3.235 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.193 1.193 22 C -0.050 4.050 23 C -0.034 4.034 24 O -0.292 6.292 25 C 0.066 3.934 26 C -0.195 4.195 27 C -0.232 4.232 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.787 -8.107 -4.980 13.650 hybrid contribution 1.086 -0.012 0.796 1.346 sum -8.702 -8.119 -4.184 12.615 Atomic orbital electron populations 1.22094 0.94924 1.02403 1.02012 1.21695 0.94232 0.98242 0.84363 0.87701 1.48043 1.60132 1.07322 1.19596 1.18225 0.76005 0.86497 0.82600 1.90810 1.51868 1.15645 1.80357 1.18725 0.95324 1.08573 0.99858 1.20778 0.97147 0.93340 0.94802 1.20485 0.97565 1.07017 0.99396 1.20899 0.93100 0.95505 0.97717 1.21144 1.01903 1.03947 0.98376 1.19218 0.88660 0.89201 0.89956 1.84059 1.19141 1.51794 1.49367 1.21366 0.83809 1.20742 1.21791 0.88937 1.25363 0.99998 0.94764 0.96135 1.70078 1.35385 1.18240 1.23580 0.85791 0.80036 0.78562 0.79112 1.19384 1.20147 1.19330 1.22388 1.01657 0.81302 0.99619 1.22924 0.98217 0.96554 0.85743 1.87919 1.71565 1.21805 1.47897 1.21828 0.94770 0.82002 0.94808 1.21811 1.01233 1.00685 0.95726 1.22343 0.94997 1.03325 1.02558 0.92497 0.91407 0.91987 0.86690 0.87152 0.87129 0.85058 0.91761 0.87970 0.91350 0.88088 0.92155 0.90865 0.91741 0.91389 0.91520 0.92120 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.64 37.16 0.32 -1.67 16 2 C 0.12 1.85 2.25 -67.42 -0.15 1.70 16 3 H 0.11 1.90 7.06 -51.93 -0.37 1.53 16 4 N -0.61 -10.66 2.24 -166.21 -0.37 -11.03 16 5 C 0.58 12.77 7.02 -12.47 -0.09 12.68 16 6 O -0.51 -13.75 15.87 -6.71 -0.11 -13.86 16 7 C -0.22 -4.74 4.91 -104.81 -0.51 -5.25 16 8 C -0.04 -0.72 7.56 -39.20 -0.30 -1.02 16 9 C -0.23 -3.62 10.03 -39.60 -0.40 -4.01 16 10 C -0.05 -0.93 10.03 -39.54 -0.40 -1.32 16 11 C -0.23 -4.94 9.12 -39.44 -0.36 -5.30 16 12 C 0.19 4.58 6.63 -38.60 -0.26 4.32 16 13 O -0.14 -4.17 8.71 -11.18 -0.10 -4.27 16 14 C -0.40 -11.17 9.43 30.90 0.29 -10.88 16 15 H 0.09 2.34 5.32 -52.48 -0.28 2.06 16 16 C 0.04 1.22 5.49 -17.52 -0.10 1.13 16 17 N -0.84 -25.01 13.67 55.48 0.76 -24.25 16 18 Si 0.94 20.32 29.55 -169.99 -5.02 15.29 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 C 0.07 1.02 4.84 -3.75 -0.02 1.00 16 23 C 0.04 0.55 6.58 37.10 0.24 0.80 16 24 O -0.37 -5.15 9.85 -35.23 -0.35 -5.49 16 25 C 0.11 1.48 0.81 -90.47 -0.07 1.41 16 26 C -0.14 -1.53 8.29 37.16 0.31 -1.22 16 27 C -0.17 -2.74 8.10 37.16 0.30 -2.44 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.73 6.42 -51.93 -0.33 0.39 16 30 H 0.06 0.75 7.24 -51.93 -0.38 0.38 16 31 H 0.12 1.66 7.15 -52.49 -0.38 1.29 16 32 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.13 2.74 5.73 -52.48 -0.30 2.44 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.10 1.46 5.29 -51.93 -0.27 1.19 16 37 H 0.07 0.81 7.69 -51.93 -0.40 0.41 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.86 6.25 -51.93 -0.32 0.53 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.68 6.38 -51.93 -0.33 0.35 16 43 H 0.07 1.22 6.11 -51.92 -0.32 0.90 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -33.58 354.87 -7.22 -40.80 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.20 Total: 7.52 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -1.18 Total: -10.07 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.39 Total: -35.28 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.55 Total: -23.62 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.58 -7.22 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764298782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.640 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds