Wall clock time and date at job start Tue Mar 31 2020 12:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.67692 * 2 1 4 4 N 1.47155 * 109.67955 * 120.51951 * 2 1 3 5 5 C 1.34779 * 120.97649 * 249.16668 * 4 2 1 6 6 O 1.21591 * 120.00286 * 354.23062 * 5 4 2 7 7 C 1.47539 * 119.99487 * 174.23471 * 5 4 2 8 8 C 1.39658 * 120.19769 * 314.08735 * 7 5 4 9 9 C 1.37830 * 119.92178 * 180.25711 * 8 7 5 10 10 C 1.38580 * 120.31905 * 359.46995 * 9 8 7 11 11 C 1.38017 * 120.39954 * 0.51168 * 10 9 8 12 12 C 1.38830 * 120.07853 * 359.76586 * 11 10 9 13 13 O 1.35515 * 120.16444 * 179.97438 * 12 11 10 14 14 C 1.34813 * 117.00332 * 6.38699 * 13 12 11 15 15 H 1.08005 * 119.99365 * 5.84673 * 14 13 12 16 16 C 1.38695 * 120.00174 * 185.85295 * 14 13 12 17 17 N 1.31517 * 120.00053 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99691 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47161 * 59.99777 * 18 16 14 20 20 H 1.48504 * 109.46817 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47016 * 299.99447 * 18 16 14 22 22 C 1.47144 * 118.03870 * 69.44444 * 4 2 1 23 23 C 1.52882 * 108.60833 * 50.22221 * 22 4 2 24 24 O 1.42957 * 109.29620 * 307.93581 * 23 22 4 25 25 C 1.42959 * 114.16766 * 62.45073 * 24 23 22 26 26 C 1.53004 * 109.51526 * 177.49206 * 25 24 23 27 27 C 1.53000 * 109.55554 * 57.36542 * 25 24 23 28 28 H 1.08997 * 109.47152 * 299.47922 * 1 2 3 29 29 H 1.09000 * 109.47373 * 59.48434 * 1 2 3 30 30 H 1.09002 * 109.46733 * 179.48059 * 1 2 3 31 31 H 1.08002 * 120.04254 * 359.97438 * 8 7 5 32 32 H 1.08004 * 119.84050 * 179.69719 * 9 8 7 33 33 H 1.08006 * 119.79698 * 180.28208 * 10 9 8 34 34 H 1.08004 * 119.96252 * 179.74854 * 11 10 9 35 35 H 0.97000 * 120.00066 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.68498 * 170.00853 * 22 4 2 37 37 H 1.09006 * 109.68138 * 290.55712 * 22 4 2 38 38 H 1.09001 * 109.57783 * 187.92657 * 23 22 4 39 39 H 1.08990 * 109.40787 * 67.84782 * 23 22 4 40 40 H 1.09000 * 109.46923 * 179.74900 * 26 25 24 41 41 H 1.09001 * 109.47183 * 299.74573 * 26 25 24 42 42 H 1.08995 * 109.46835 * 59.74654 * 26 25 24 43 43 H 1.09008 * 109.47166 * 300.23172 * 27 25 24 44 44 H 1.09004 * 109.47076 * 60.22473 * 27 25 24 45 45 H 1.08998 * 109.47594 * 180.22959 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 7 2.0256 -0.7036 1.1936 5 6 2.6461 -0.0347 2.1855 6 8 2.8973 1.1480 2.0569 7 6 3.0207 -0.7376 3.4275 8 6 2.1064 -1.5836 4.0589 9 6 2.4606 -2.2333 5.2217 10 6 3.7246 -2.0601 5.7628 11 6 4.6387 -1.2275 5.1496 12 6 4.2975 -0.5605 3.9808 13 8 5.1935 0.2579 3.3775 14 6 6.4417 0.2801 3.8865 15 1 6.7152 -0.4046 4.6757 16 6 7.3744 1.1823 3.3967 17 7 7.0413 2.0158 2.4355 18 14 9.1036 1.2135 4.1026 19 1 9.7447 -0.1106 3.9005 20 1 9.9009 2.2595 3.4129 21 1 9.0400 1.5162 5.5550 22 6 1.8291 -2.1599 1.2694 23 6 2.3261 -2.7877 -0.0330 24 8 1.7169 -2.1212 -1.1413 25 6 2.0463 -0.7338 -1.2429 26 6 1.3918 -0.1434 -2.4936 27 6 3.5650 -0.5736 -1.3369 28 1 -0.3633 0.5057 0.8946 29 1 -0.3634 0.5218 -0.8853 30 1 -0.3633 -1.0277 -0.0093 31 1 1.1215 -1.7251 3.6391 32 1 1.7508 -2.8835 5.7116 33 1 3.9947 -2.5769 6.6719 34 1 5.6204 -1.0945 5.5796 35 1 7.6937 2.6465 2.0927 36 1 2.3946 -2.5635 2.1094 37 1 0.7697 -2.3812 1.3994 38 1 2.0611 -3.8448 -0.0534 39 1 3.4091 -2.6826 -0.0955 40 1 1.6398 0.9154 -2.5680 41 1 1.7594 -0.6655 -3.3770 42 1 0.3101 -0.2595 -2.4268 43 1 4.0307 -0.9960 -0.4464 44 1 3.9314 -1.0956 -2.2209 45 1 3.8149 0.4848 -1.4103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764298782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:47 Heat of formation + Delta-G solvation = -91.975994 kcal Electronic energy + Delta-G solvation = -28570.027405 eV Core-core repulsion = 24745.974734 eV Total energy + Delta-G solvation = -3824.052672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99263 -40.79407 -39.31839 -38.09917 -35.93052 -35.27072 -34.36741 -32.26504 -30.96615 -30.65411 -29.75010 -28.30071 -27.41607 -25.43519 -24.43735 -23.83213 -23.10626 -21.26926 -19.99621 -19.79915 -18.91195 -18.13873 -17.79476 -16.85967 -16.83112 -16.38008 -16.34363 -16.05643 -15.72610 -15.46565 -15.41019 -15.20642 -14.60679 -14.52980 -14.37684 -14.21485 -13.81135 -13.58132 -13.37620 -13.16066 -13.09091 -13.06142 -12.82014 -12.76058 -12.62070 -12.47477 -12.36649 -12.30719 -12.18120 -11.99201 -11.51752 -11.34344 -11.06605 -10.85717 -10.67677 -9.82947 -9.48150 -9.07602 -8.49439 -6.20571 0.18755 0.68056 1.29951 1.42504 1.47731 1.75047 1.99538 2.12968 2.68624 2.79708 3.12682 3.38579 3.47084 3.68034 3.75853 3.92297 3.99899 4.08263 4.16030 4.20620 4.26266 4.33417 4.44471 4.51467 4.53422 4.59381 4.63666 4.70667 4.74674 4.82342 4.85507 4.91274 4.92947 4.97835 5.04379 5.09738 5.11120 5.19902 5.32708 5.47135 5.53963 5.62960 5.67510 5.92160 6.13699 6.14075 6.37763 6.91233 7.26087 7.73890 8.71817 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.005016 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.341109 B = 5581.334440 C = 6922.773995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.109 3.891 3 H 0.066 0.934 4 N -0.606 5.606 5 C 0.566 3.434 6 O -0.581 6.581 7 C -0.234 4.234 8 C -0.034 4.034 9 C -0.192 4.192 10 C -0.043 4.043 11 C -0.250 4.250 12 C 0.146 3.854 13 O -0.209 6.209 14 C -0.422 4.422 15 H 0.107 0.893 16 C -0.023 4.023 17 N -0.912 5.912 18 Si 1.021 2.979 19 H -0.253 1.253 20 H -0.274 1.274 21 H -0.254 1.254 22 C 0.068 3.932 23 C 0.042 3.958 24 O -0.366 6.366 25 C 0.112 3.888 26 C -0.133 4.133 27 C -0.172 4.172 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.152 0.848 32 H 0.166 0.834 33 H 0.155 0.845 34 H 0.124 0.876 35 H 0.271 0.729 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.143 0.857 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.031 0.969 44 H 0.079 0.921 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.798 -13.104 -3.252 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.006 3.994 3 H 0.085 0.915 4 N -0.340 5.340 5 C 0.357 3.643 6 O -0.460 6.460 7 C -0.239 4.239 8 C -0.053 4.053 9 C -0.210 4.210 10 C -0.061 4.061 11 C -0.270 4.270 12 C 0.092 3.908 13 O -0.113 6.113 14 C -0.497 4.497 15 H 0.124 0.876 16 C -0.221 4.221 17 N -0.549 5.549 18 Si 0.839 3.161 19 H -0.177 1.177 20 H -0.199 1.199 21 H -0.178 1.178 22 C -0.053 4.053 23 C -0.035 4.035 24 O -0.285 6.285 25 C 0.072 3.928 26 C -0.191 4.191 27 C -0.229 4.229 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.170 0.830 32 H 0.183 0.817 33 H 0.173 0.827 34 H 0.141 0.859 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.160 0.840 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.050 0.950 44 H 0.098 0.902 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.712 -12.239 -3.786 18.047 hybrid contribution 1.628 0.951 0.527 1.958 sum -11.083 -11.288 -3.260 16.152 Atomic orbital electron populations 1.22028 0.91764 1.03660 1.02783 1.21898 0.96548 0.96527 0.84429 0.91528 1.48097 1.58212 1.08954 1.18702 1.18573 0.75836 0.85928 0.83926 1.90769 1.54829 1.18621 1.81797 1.19121 0.95297 1.09327 1.00119 1.21219 0.97544 0.91633 0.94868 1.21170 0.97490 1.04801 0.97522 1.21419 0.92616 0.93638 0.98457 1.21293 1.02847 1.04994 0.97835 1.19955 0.89572 0.89605 0.91629 1.84049 1.20160 1.55085 1.51994 1.21902 0.84481 1.21286 1.22069 0.87585 1.26738 1.04944 0.94054 0.96378 1.70275 1.37213 1.20560 1.26807 0.84632 0.73639 0.79152 0.78636 1.17673 1.19877 1.17829 1.22710 1.03777 0.78645 1.00218 1.23075 0.96977 0.98497 0.84973 1.87935 1.71249 1.21150 1.48133 1.21808 0.93196 0.82450 0.95376 1.21829 1.02170 1.00749 0.94308 1.22323 0.97018 1.01941 1.01661 0.93434 0.89038 0.90261 0.83019 0.81699 0.82708 0.85871 0.92001 0.88343 0.87693 0.83967 0.94498 0.90666 0.90516 0.89386 0.95019 0.90213 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.64 71.98 0.62 -2.76 16 2 C 0.11 3.48 2.25 44.96 0.10 3.58 16 3 H 0.07 2.64 7.06 -2.39 -0.02 2.63 16 4 N -0.61 -21.34 2.24 -798.04 -1.79 -23.12 16 5 C 0.57 26.61 7.02 86.70 0.61 27.22 16 6 O -0.58 -34.31 15.87 7.47 0.12 -34.20 16 7 C -0.23 -10.28 4.91 -19.99 -0.10 -10.38 16 8 C -0.03 -1.06 7.56 22.52 0.17 -0.89 16 9 C -0.19 -5.04 10.03 22.25 0.22 -4.82 16 10 C -0.04 -1.32 10.03 22.30 0.22 -1.09 16 11 C -0.25 -10.59 9.12 22.36 0.20 -10.38 16 12 C 0.15 7.50 6.63 22.91 0.15 7.65 16 13 O -0.21 -13.25 8.71 -8.52 -0.07 -13.32 16 14 C -0.42 -25.33 9.43 67.93 0.64 -24.69 16 15 H 0.11 5.70 5.32 -2.91 -0.02 5.68 16 16 C -0.02 -1.33 5.49 84.85 0.47 -0.87 16 17 N -0.91 -59.49 13.67 21.62 0.30 -59.19 16 18 Si 1.02 44.05 29.55 68.60 2.03 46.08 16 19 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 22 C 0.07 1.73 4.84 86.22 0.42 2.15 16 23 C 0.04 0.99 6.58 71.94 0.47 1.46 16 24 O -0.37 -9.19 9.85 -148.98 -1.47 -10.66 16 25 C 0.11 3.09 0.81 -10.69 -0.01 3.08 16 26 C -0.13 -2.74 8.29 71.98 0.60 -2.14 16 27 C -0.17 -5.76 8.10 71.98 0.58 -5.18 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.71 6.42 -2.39 -0.02 1.70 16 30 H 0.08 1.60 7.24 -2.39 -0.02 1.58 16 31 H 0.15 3.59 7.15 -2.91 -0.02 3.57 16 32 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 33 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.12 5.29 5.73 -2.91 -0.02 5.27 16 35 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 36 H 0.10 2.58 5.29 -2.38 -0.01 2.57 16 37 H 0.11 1.97 7.69 -2.38 -0.02 1.95 16 38 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.04 1.06 6.25 -2.39 -0.01 1.04 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.47 6.38 -2.39 -0.02 1.46 16 43 H 0.03 1.25 6.11 -2.38 -0.01 1.24 16 44 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -86.87 354.87 5.50 -81.38 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 1.01 Total: 31.10 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 5.37 Total: -18.06 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -1.49 Total: -82.32 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -1.42 Total: -58.17 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -86.87 5.50 -81.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764298782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.600 kcal (2) G-P(sol) polarization free energy of solvation -86.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds