Wall clock time and date at job start Tue Mar 31 2020 12:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46899 * 2 1 4 4 C 1.52999 * 109.46940 * 239.99144 * 2 1 3 5 5 N 1.46905 * 109.46610 * 180.02562 * 4 2 1 6 6 C 1.47018 * 110.99675 * 190.00163 * 5 4 2 7 7 C 1.53099 * 109.25482 * 182.39243 * 6 5 4 8 8 O 1.43012 * 109.26144 * 303.15248 * 7 6 5 9 9 C 1.43011 * 113.73747 * 58.67068 * 8 7 6 10 10 C 1.47016 * 111.00286 * 313.63610 * 5 4 2 11 11 O 1.45207 * 109.46747 * 119.99625 * 2 1 3 12 12 C 1.34801 * 116.99843 * 269.99784 * 11 2 1 13 13 O 1.21530 * 120.00019 * 0.02562 * 12 11 2 14 14 C 1.47288 * 119.99826 * 179.97438 * 12 11 2 15 15 C 1.39297 * 120.28743 * 354.20722 * 14 12 11 16 16 C 1.38198 * 120.08159 * 179.97438 * 15 14 12 17 17 C 1.38841 * 120.68779 * 0.02562 * 16 15 14 18 18 C 1.37594 * 120.57826 * 359.97438 * 17 16 15 19 19 C 1.40704 * 119.89187 * 359.74211 * 18 17 16 20 20 C 1.40863 * 120.33338 * 180.25417 * 19 18 17 21 21 H 1.07998 * 119.99729 * 146.08300 * 20 19 18 22 22 C 1.40284 * 119.99955 * 326.08440 * 20 19 18 23 23 N 1.30614 * 120.00277 * 350.68880 * 22 20 19 24 24 Si 1.86804 * 120.00156 * 170.69208 * 22 20 19 25 25 H 1.48501 * 109.46928 * 89.99582 * 24 22 20 26 26 H 1.48498 * 109.47345 * 209.99753 * 24 22 20 27 27 H 1.48504 * 109.46925 * 329.99806 * 24 22 20 28 28 H 1.08998 * 109.46899 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47032 * 300.00659 * 1 2 3 30 30 H 1.08997 * 109.46860 * 60.00484 * 1 2 3 31 31 H 1.09005 * 109.46595 * 60.00899 * 4 2 1 32 32 H 1.09000 * 109.47533 * 300.00335 * 4 2 1 33 33 H 1.09006 * 109.50381 * 62.46049 * 6 5 4 34 34 H 1.09001 * 109.51053 * 302.33105 * 6 5 4 35 35 H 1.09006 * 109.50140 * 183.21831 * 7 6 5 36 36 H 1.08996 * 109.53907 * 63.11511 * 7 6 5 37 37 H 1.09003 * 109.50615 * 61.26481 * 9 8 7 38 38 H 1.08998 * 109.51118 * 181.39635 * 9 8 7 39 39 H 1.08999 * 109.50544 * 297.54482 * 10 5 4 40 40 H 1.09001 * 109.50259 * 57.67791 * 10 5 4 41 41 H 1.08002 * 119.95501 * 359.97438 * 15 14 12 42 42 H 1.08005 * 119.65498 * 180.02562 * 16 15 14 43 43 H 1.07997 * 119.70671 * 179.97438 * 17 16 15 44 44 H 1.08006 * 120.05453 * 180.02562 * 18 17 16 45 45 H 0.97005 * 120.00125 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5091 -0.7219 -1.2488 6 6 4.0360 -1.1915 -2.5384 7 6 5.5651 -1.2330 -2.4741 8 8 6.0581 0.0641 -2.1277 9 6 5.5654 0.5520 -0.8769 10 6 4.0364 0.6117 -0.9250 11 8 2.0140 -0.6845 1.1857 12 6 2.2180 0.0673 2.2858 13 8 1.9970 1.2620 2.2550 14 6 2.7077 -0.5593 3.5256 15 6 2.8473 -1.9430 3.6057 16 6 3.3076 -2.5264 4.7708 17 6 3.6352 -1.7470 5.8721 18 6 3.5079 -0.3778 5.8235 19 6 3.0471 0.2422 4.6475 20 6 2.9183 1.6436 4.5856 21 1 3.1071 2.1627 3.6576 22 6 2.5449 2.3648 5.7295 23 7 2.1411 1.7313 6.7980 24 14 2.6249 4.2311 5.7245 25 1 1.3269 4.7809 5.2574 26 1 2.9029 4.7183 7.0994 27 1 3.7085 4.6776 4.8125 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.6767 -0.2076 -2.1392 32 1 1.6767 -1.7491 -1.2491 33 1 3.7233 -0.5097 -3.3293 34 1 3.6532 -2.1907 -2.7460 35 1 5.9624 -1.5258 -3.4460 36 1 5.8788 -1.9549 -1.7202 37 1 5.8785 -0.1179 -0.0761 38 1 5.9629 1.5502 -0.6936 39 1 3.7237 1.3222 -1.6902 40 1 3.6538 0.9286 0.0452 41 1 2.5955 -2.5605 2.7561 42 1 3.4137 -3.5999 4.8252 43 1 3.9931 -2.2196 6.7749 44 1 3.7655 0.2203 6.6851 45 1 1.8825 2.2301 7.5888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782250382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:05 Heat of formation + Delta-G solvation = -104.751624 kcal Electronic energy + Delta-G solvation = -27782.724872 eV Core-core repulsion = 23958.118208 eV Total energy + Delta-G solvation = -3824.606664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.97366 -39.13313 -37.42754 -36.21054 -34.96704 -33.74441 -32.01210 -31.16461 -30.02165 -29.52986 -28.00710 -25.62250 -24.68385 -24.06064 -22.96584 -21.24773 -20.85114 -20.19176 -19.42064 -17.47778 -16.87299 -16.69605 -16.15333 -15.63785 -15.37320 -15.15869 -15.00077 -14.85085 -14.62551 -14.28789 -14.03519 -13.48956 -13.23802 -12.98041 -12.76048 -12.57934 -12.43909 -12.15588 -11.98897 -11.74422 -11.63856 -11.48570 -11.40907 -11.15649 -11.04399 -10.71525 -10.65943 -10.61174 -10.33131 -10.17767 -9.86039 -9.71078 -9.66318 -9.33433 -8.77692 -8.37016 -7.63678 -7.42472 -6.88264 -4.48725 2.22631 2.79909 3.04874 3.11287 3.19973 3.52437 3.71292 3.86333 3.90000 3.93202 4.60471 4.70869 4.86708 4.93472 5.10131 5.19257 5.20439 5.24520 5.33418 5.39545 5.51743 5.56353 5.61517 5.64184 5.71010 5.73135 5.90472 5.97841 6.05565 6.14890 6.19927 6.29610 6.38275 6.62910 6.90584 6.92072 6.95553 7.06283 7.11252 7.14710 7.36544 7.49044 7.63885 7.90700 7.94497 8.14278 8.56550 8.71300 8.79186 9.12830 10.06350 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.004186 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.221994 B = 6687.305143 C = 7095.237186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.082 3.918 3 H 0.082 0.918 4 C 0.062 3.938 5 N -0.527 5.527 6 C 0.018 3.982 7 C 0.064 3.936 8 O -0.389 6.389 9 C 0.065 3.935 10 C 0.012 3.988 11 O -0.348 6.348 12 C 0.505 3.495 13 O -0.520 6.520 14 C -0.248 4.248 15 C -0.035 4.035 16 C -0.248 4.248 17 C -0.090 4.090 18 C -0.150 4.150 19 C 0.148 3.852 20 C -0.417 4.417 21 H 0.104 0.896 22 C 0.071 3.929 23 N -0.787 5.787 24 Si 0.918 3.082 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.259 1.259 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.039 0.961 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 -3.498 -13.056 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.026 3.974 3 H 0.100 0.900 4 C -0.065 4.065 5 N -0.252 5.252 6 C -0.110 4.110 7 C -0.013 4.013 8 O -0.308 6.308 9 C -0.012 4.012 10 C -0.116 4.116 11 O -0.266 6.266 12 C 0.356 3.644 13 O -0.411 6.411 14 C -0.251 4.251 15 C -0.053 4.053 16 C -0.268 4.268 17 C -0.109 4.109 18 C -0.169 4.169 19 C 0.144 3.856 20 C -0.444 4.444 21 H 0.122 0.878 22 C -0.149 4.149 23 N -0.412 5.412 24 Si 0.742 3.258 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.182 1.182 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.057 0.943 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.137 0.863 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.596 -3.316 -12.608 13.134 hybrid contribution -0.794 1.213 -0.332 1.487 sum 0.802 -2.102 -12.940 13.134 Atomic orbital electron populations 1.22146 0.94720 1.02755 1.02838 1.22526 0.93854 0.97315 0.83699 0.89986 1.22283 0.87109 1.01892 0.95248 1.62197 1.07481 1.25432 1.30079 1.22794 0.96711 1.01169 0.90329 1.22630 0.92119 0.85541 1.01045 1.87949 1.70079 1.33631 1.39097 1.22679 0.92187 1.00299 0.86055 1.22912 0.96614 0.89672 1.02419 1.86728 1.78179 1.42057 1.19677 1.21395 0.74798 0.85092 0.83095 1.90717 1.50612 1.16195 1.83601 1.18776 1.19620 0.92946 0.93793 1.20838 0.94737 0.93505 0.96242 1.20359 1.13631 0.97642 0.95118 1.20855 0.98937 0.94468 0.96629 1.21299 1.03307 0.93196 0.99107 1.17451 0.85989 0.93003 0.89146 1.20164 1.35460 0.91830 0.96989 0.87832 1.26125 0.92655 1.01843 0.94231 1.69707 1.29519 1.38779 1.03188 0.86148 0.80061 0.81387 0.78241 1.19259 1.20149 1.18238 0.91743 0.91330 0.91658 0.93354 0.89491 0.94277 0.89668 0.88743 0.92078 0.91734 0.88358 0.94262 0.88677 0.87937 0.88893 0.88930 0.86307 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.55 37.16 0.35 -1.97 16 2 C 0.08 1.30 1.88 -26.73 -0.05 1.25 16 3 H 0.08 1.41 5.30 -51.93 -0.28 1.14 16 4 C 0.06 0.80 4.98 -3.82 -0.02 0.78 16 5 N -0.53 -7.26 4.75 -234.29 -1.11 -8.38 16 6 C 0.02 0.20 5.62 -3.71 -0.02 0.18 16 7 C 0.06 0.70 7.01 37.21 0.26 0.96 16 8 O -0.39 -5.29 10.83 -35.23 -0.38 -5.67 16 9 C 0.06 0.89 7.01 37.21 0.26 1.15 16 10 C 0.01 0.17 4.94 -3.71 -0.02 0.15 16 11 O -0.35 -6.88 8.87 -40.77 -0.36 -7.24 16 12 C 0.51 11.82 7.46 34.41 0.26 12.07 16 13 O -0.52 -13.04 12.86 -19.29 -0.25 -13.29 16 14 C -0.25 -6.18 5.92 -104.38 -0.62 -6.79 16 15 C -0.03 -0.78 9.60 -39.20 -0.38 -1.16 16 16 C -0.25 -5.37 10.03 -39.37 -0.39 -5.77 16 17 C -0.09 -2.02 10.01 -39.59 -0.40 -2.42 16 18 C -0.15 -3.76 8.62 -38.89 -0.34 -4.09 16 19 C 0.15 3.91 5.51 -106.53 -0.59 3.33 16 20 C -0.42 -11.14 7.67 -37.82 -0.29 -11.43 16 21 H 0.10 2.83 5.93 -52.49 -0.31 2.52 16 22 C 0.07 1.77 5.25 -17.30 -0.09 1.68 16 23 N -0.79 -19.93 11.13 55.56 0.62 -19.31 16 24 Si 0.92 19.09 29.57 -169.99 -5.03 14.07 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.10 1.63 5.57 -51.93 -0.29 1.34 16 41 H 0.10 2.10 7.61 -52.49 -0.40 1.70 16 42 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.12 3.02 6.58 -52.48 -0.35 2.67 16 45 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -29.03 363.44 -9.77 -38.80 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.67 Total: 7.61 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.06 Total: -12.07 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: -0.49 Total: -27.69 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.99 Total: -26.20 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.03 -9.77 -38.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782250382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.950 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds