Wall clock time and date at job start Tue Mar 31 2020 12:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46899 * 2 1 4 4 C 1.52999 * 109.46940 * 239.99144 * 2 1 3 5 5 N 1.46905 * 109.46610 * 180.02562 * 4 2 1 6 6 C 1.47018 * 110.99675 * 190.00163 * 5 4 2 7 7 C 1.53099 * 109.25482 * 182.39243 * 6 5 4 8 8 O 1.43012 * 109.26144 * 303.15248 * 7 6 5 9 9 C 1.43011 * 113.73747 * 58.67068 * 8 7 6 10 10 C 1.47016 * 111.00286 * 313.63610 * 5 4 2 11 11 O 1.45207 * 109.46747 * 119.99625 * 2 1 3 12 12 C 1.34801 * 116.99843 * 269.99784 * 11 2 1 13 13 O 1.21530 * 120.00019 * 0.02562 * 12 11 2 14 14 C 1.47288 * 119.99826 * 179.97438 * 12 11 2 15 15 C 1.39297 * 120.28743 * 354.20722 * 14 12 11 16 16 C 1.38198 * 120.08159 * 179.97438 * 15 14 12 17 17 C 1.38841 * 120.68779 * 0.02562 * 16 15 14 18 18 C 1.37594 * 120.57826 * 359.97438 * 17 16 15 19 19 C 1.40704 * 119.89187 * 359.74211 * 18 17 16 20 20 C 1.40863 * 120.33338 * 180.25417 * 19 18 17 21 21 H 1.07998 * 119.99729 * 146.08300 * 20 19 18 22 22 C 1.40284 * 119.99955 * 326.08440 * 20 19 18 23 23 N 1.30614 * 120.00277 * 350.68880 * 22 20 19 24 24 Si 1.86804 * 120.00156 * 170.69208 * 22 20 19 25 25 H 1.48501 * 109.46928 * 89.99582 * 24 22 20 26 26 H 1.48498 * 109.47345 * 209.99753 * 24 22 20 27 27 H 1.48504 * 109.46925 * 329.99806 * 24 22 20 28 28 H 1.08998 * 109.46899 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47032 * 300.00659 * 1 2 3 30 30 H 1.08997 * 109.46860 * 60.00484 * 1 2 3 31 31 H 1.09005 * 109.46595 * 60.00899 * 4 2 1 32 32 H 1.09000 * 109.47533 * 300.00335 * 4 2 1 33 33 H 1.09006 * 109.50381 * 62.46049 * 6 5 4 34 34 H 1.09001 * 109.51053 * 302.33105 * 6 5 4 35 35 H 1.09006 * 109.50140 * 183.21831 * 7 6 5 36 36 H 1.08996 * 109.53907 * 63.11511 * 7 6 5 37 37 H 1.09003 * 109.50615 * 61.26481 * 9 8 7 38 38 H 1.08998 * 109.51118 * 181.39635 * 9 8 7 39 39 H 1.08999 * 109.50544 * 297.54482 * 10 5 4 40 40 H 1.09001 * 109.50259 * 57.67791 * 10 5 4 41 41 H 1.08002 * 119.95501 * 359.97438 * 15 14 12 42 42 H 1.08005 * 119.65498 * 180.02562 * 16 15 14 43 43 H 1.07997 * 119.70671 * 179.97438 * 17 16 15 44 44 H 1.08006 * 120.05453 * 180.02562 * 18 17 16 45 45 H 0.97005 * 120.00125 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5091 -0.7219 -1.2488 6 6 4.0360 -1.1915 -2.5384 7 6 5.5651 -1.2330 -2.4741 8 8 6.0581 0.0641 -2.1277 9 6 5.5654 0.5520 -0.8769 10 6 4.0364 0.6117 -0.9250 11 8 2.0140 -0.6845 1.1857 12 6 2.2180 0.0673 2.2858 13 8 1.9970 1.2620 2.2550 14 6 2.7077 -0.5593 3.5256 15 6 2.8473 -1.9430 3.6057 16 6 3.3076 -2.5264 4.7708 17 6 3.6352 -1.7470 5.8721 18 6 3.5079 -0.3778 5.8235 19 6 3.0471 0.2422 4.6475 20 6 2.9183 1.6436 4.5856 21 1 3.1071 2.1627 3.6576 22 6 2.5449 2.3648 5.7295 23 7 2.1411 1.7313 6.7980 24 14 2.6249 4.2311 5.7245 25 1 1.3269 4.7809 5.2574 26 1 2.9029 4.7183 7.0994 27 1 3.7085 4.6776 4.8125 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.6767 -0.2076 -2.1392 32 1 1.6767 -1.7491 -1.2491 33 1 3.7233 -0.5097 -3.3293 34 1 3.6532 -2.1907 -2.7460 35 1 5.9624 -1.5258 -3.4460 36 1 5.8788 -1.9549 -1.7202 37 1 5.8785 -0.1179 -0.0761 38 1 5.9629 1.5502 -0.6936 39 1 3.7237 1.3222 -1.6902 40 1 3.6538 0.9286 0.0452 41 1 2.5955 -2.5605 2.7561 42 1 3.4137 -3.5999 4.8252 43 1 3.9931 -2.2196 6.7749 44 1 3.7655 0.2203 6.6851 45 1 1.8825 2.2301 7.5888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782250382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:04 Heat of formation + Delta-G solvation = -121.734033 kcal Electronic energy + Delta-G solvation = -27783.461285 eV Core-core repulsion = 23958.118208 eV Total energy + Delta-G solvation = -3825.343077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40110 -40.43966 -39.12983 -37.63685 -36.41698 -35.59045 -33.28238 -32.17599 -31.85763 -31.34872 -29.05162 -27.48716 -25.82743 -25.10000 -24.63389 -22.97752 -22.15967 -21.57168 -20.89539 -19.35884 -18.50481 -17.83468 -17.40481 -17.16799 -16.95775 -16.54575 -16.10774 -15.99902 -15.92444 -15.84035 -15.41478 -15.08877 -14.76592 -14.47335 -14.32684 -14.08005 -13.67621 -13.47709 -13.26466 -13.15282 -13.03690 -12.87915 -12.85226 -12.59392 -12.47511 -12.39035 -12.33062 -11.96269 -11.75396 -11.54277 -11.43576 -11.37587 -11.17935 -10.73267 -10.59652 -9.48973 -9.38373 -9.30132 -8.73457 -6.44127 0.37591 1.00154 1.33085 1.45806 1.49012 2.02506 2.10377 2.17879 2.67825 2.73071 2.89827 3.59368 3.65744 3.84665 3.93422 4.03931 4.07386 4.10207 4.21436 4.23660 4.32428 4.43318 4.47322 4.57639 4.58489 4.64842 4.69001 4.72177 4.73981 4.86158 4.87667 4.97636 4.99646 5.08915 5.14575 5.20682 5.29284 5.56376 5.71096 5.82406 5.86506 5.97390 6.02369 6.08148 6.11678 6.29852 6.63635 6.79456 6.89182 7.34453 8.23714 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.004186 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.221994 B = 6687.305143 C = 7095.237186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.074 3.926 3 H 0.063 0.937 4 C 0.070 3.930 5 N -0.547 5.547 6 C 0.021 3.979 7 C 0.057 3.943 8 O -0.399 6.399 9 C 0.068 3.932 10 C 0.019 3.981 11 O -0.345 6.345 12 C 0.509 3.491 13 O -0.546 6.546 14 C -0.273 4.273 15 C -0.037 4.037 16 C -0.239 4.239 17 C -0.084 4.084 18 C -0.175 4.175 19 C 0.120 3.880 20 C -0.453 4.453 21 H 0.084 0.916 22 C 0.035 3.965 23 N -0.814 5.814 24 Si 0.980 3.020 25 H -0.270 1.270 26 H -0.255 1.255 27 H -0.262 1.262 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.105 0.895 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.106 0.894 45 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 -5.125 -14.711 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 H 0.081 0.919 4 C -0.058 4.058 5 N -0.272 5.272 6 C -0.107 4.107 7 C -0.019 4.019 8 O -0.318 6.318 9 C -0.009 4.009 10 C -0.110 4.110 11 O -0.263 6.263 12 C 0.360 3.640 13 O -0.440 6.440 14 C -0.276 4.276 15 C -0.056 4.056 16 C -0.258 4.258 17 C -0.103 4.103 18 C -0.195 4.195 19 C 0.117 3.883 20 C -0.481 4.481 21 H 0.102 0.898 22 C -0.181 4.181 23 N -0.440 5.440 24 Si 0.800 3.200 25 H -0.195 1.195 26 H -0.179 1.179 27 H -0.186 1.186 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.142 0.858 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.124 0.876 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.410 -4.980 -14.275 15.185 hybrid contribution -0.737 1.525 0.053 1.694 sum 0.673 -3.456 -14.223 14.652 Atomic orbital electron populations 1.22125 0.93090 1.03748 1.02925 1.22924 0.95230 0.96717 0.83300 0.91927 1.22296 0.86762 1.02578 0.94126 1.62203 1.08076 1.24751 1.32196 1.22877 0.96415 1.02406 0.88979 1.22887 0.92506 0.84204 1.02343 1.87937 1.70393 1.34988 1.38504 1.22591 0.91917 1.00405 0.86005 1.22729 0.96851 0.90582 1.00798 1.86663 1.77926 1.41809 1.19920 1.21261 0.74236 0.84763 0.83765 1.90692 1.51609 1.17362 1.84299 1.19159 1.19846 0.94275 0.94281 1.21116 0.94288 0.92655 0.97508 1.20813 1.11428 0.99529 0.94056 1.21232 0.97385 0.93493 0.98166 1.21283 1.05066 0.94518 0.98598 1.17809 0.86532 0.93505 0.90445 1.20152 1.38259 0.92579 0.97152 0.89821 1.26812 0.91850 1.05924 0.93558 1.69723 1.30124 1.40400 1.03762 0.85244 0.79571 0.76085 0.79058 1.19474 1.17891 1.18566 0.90230 0.94419 0.88388 0.90582 0.88026 0.93414 0.87399 0.85757 0.92701 0.93344 0.87710 0.93597 0.92071 0.85778 0.85034 0.85725 0.87575 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 9.55 71.98 0.69 -3.62 16 2 C 0.07 2.30 1.88 30.60 0.06 2.36 16 3 H 0.06 2.23 5.30 -2.39 -0.01 2.22 16 4 C 0.07 1.62 4.98 86.30 0.43 2.05 16 5 N -0.55 -14.21 4.75 -895.17 -4.25 -18.46 16 6 C 0.02 0.39 5.62 86.31 0.49 0.88 16 7 C 0.06 1.13 7.01 72.02 0.50 1.64 16 8 O -0.40 -10.43 10.83 -148.98 -1.61 -12.04 16 9 C 0.07 1.90 7.01 72.01 0.50 2.40 16 10 C 0.02 0.55 4.94 86.31 0.43 0.97 16 11 O -0.35 -13.75 8.87 -57.13 -0.51 -14.25 16 12 C 0.51 24.71 7.46 70.20 0.52 25.23 16 13 O -0.55 -29.04 12.86 19.74 0.25 -28.79 16 14 C -0.27 -13.92 5.92 -19.71 -0.12 -14.04 16 15 C -0.04 -1.65 9.60 22.52 0.22 -1.43 16 16 C -0.24 -9.80 10.03 22.40 0.22 -9.58 16 17 C -0.08 -3.68 10.01 22.26 0.22 -3.45 16 18 C -0.18 -9.00 8.62 22.72 0.20 -8.80 16 19 C 0.12 6.65 5.51 -21.10 -0.12 6.53 16 20 C -0.45 -25.62 7.67 23.41 0.18 -25.44 16 21 H 0.08 4.92 5.93 -2.91 -0.02 4.91 16 22 C 0.03 1.81 5.25 85.37 0.45 2.25 16 23 N -0.81 -42.54 11.13 21.88 0.24 -42.30 16 24 Si 0.98 40.44 29.57 68.60 2.03 42.47 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 26 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 27 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 1.40 8.08 -2.38 -0.02 1.38 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.11 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 2.21 5.57 -2.39 -0.01 2.19 16 41 H 0.12 4.85 7.61 -2.91 -0.02 4.82 16 42 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 43 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 44 H 0.11 5.60 6.58 -2.91 -0.02 5.58 16 45 H 0.29 13.70 8.29 -92.70 -0.77 12.93 16 Total: -1.00 -66.16 363.44 2.02 -64.14 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.99 Total: 31.28 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 4.87 Total: -22.05 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -4.01 Total: -60.75 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -1.87 Total: -55.08 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -66.16 2.02 -64.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782250382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.595 kcal (2) G-P(sol) polarization free energy of solvation -66.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds