Wall clock time and date at job start Tue Mar 31 2020 12:00:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45195 * 1
3 3 C 1.34233 * 116.99995 * 2 1
4 4 O 1.20818 * 119.99692 * 0.02562 * 3 2 1
5 5 C 1.50699 * 119.99764 * 180.02562 * 3 2 1
6 6 H 1.09002 * 110.63143 * 298.34756 * 5 3 2
7 7 C 1.55140 * 110.70873 * 61.45456 * 5 3 2
8 8 C 1.54898 * 101.65447 * 154.20634 * 7 5 3
9 9 N 1.47847 * 104.79792 * 322.93395 * 8 7 5
10 10 C 1.46900 * 110.99996 * 146.36355 * 9 8 7
11 11 C 1.50702 * 109.47363 * 69.87421 * 10 9 8
12 12 C 1.38297 * 119.93318 * 89.99563 * 11 10 9
13 13 C 1.38095 * 120.07013 * 179.97438 * 12 11 10
14 14 C 1.38878 * 119.92879 * 0.02562 * 13 12 11
15 15 O 1.35760 * 120.06868 * 179.97438 * 14 13 12
16 16 C 1.34831 * 116.99715 * 354.46842 * 15 14 13
17 17 H 1.07997 * 120.00242 * 5.05103 * 16 15 14
18 18 C 1.38656 * 119.99822 * 185.05388 * 16 15 14
19 19 N 1.31551 * 119.99935 * 359.97438 * 18 16 15
20 20 Si 1.86797 * 119.99966 * 179.97438 * 18 16 15
21 21 H 1.48506 * 109.47247 * 0.02562 * 20 18 16
22 22 H 1.48502 * 109.46735 * 120.00106 * 20 18 16
23 23 H 1.48503 * 109.47635 * 240.00101 * 20 18 16
24 24 C 1.38878 * 119.86540 * 0.02562 * 14 13 12
25 25 C 1.38096 * 119.92779 * 359.97438 * 24 14 13
26 26 C 1.47443 * 108.56784 * 24.09150 * 9 8 7
27 27 H 1.09000 * 109.88677 * 239.60807 * 26 9 8
28 28 C 1.52994 * 109.88678 * 118.41649 * 26 9 8
29 29 H 1.08996 * 109.47298 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47201 * 299.99902 * 1 2 3
31 31 H 1.09000 * 109.47537 * 59.99976 * 1 2 3
32 32 H 1.09002 * 110.98642 * 36.11646 * 7 5 3
33 33 H 1.09001 * 110.99032 * 272.30523 * 7 5 3
34 34 H 1.09003 * 110.37799 * 204.09903 * 8 7 5
35 35 H 1.09002 * 110.46437 * 81.80838 * 8 7 5
36 36 H 1.08992 * 109.47109 * 309.87068 * 10 9 8
37 37 H 1.09000 * 109.46854 * 189.86963 * 10 9 8
38 38 H 1.08000 * 119.96366 * 0.25934 * 12 11 10
39 39 H 1.07999 * 120.03506 * 180.02562 * 13 12 11
40 40 H 0.96999 * 120.00238 * 179.97438 * 19 18 16
41 41 H 1.08001 * 120.03376 * 179.97438 * 24 14 13
42 42 H 1.08002 * 119.96622 * 179.97438 * 25 24 14
43 43 H 1.09007 * 109.47134 * 61.45458 * 28 26 9
44 44 H 1.09001 * 109.46994 * 181.45267 * 28 26 9
45 45 H 1.09003 * 109.47543 * 301.45555 * 28 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2748 -0.0006
6 1 3.9755 0.8110 0.8969
7 6 4.1499 0.6113 -1.2757
8 6 5.5011 1.3538 -1.4244
9 7 5.2150 2.7447 -1.0128
10 6 6.3775 3.3461 -0.3458
11 6 7.4724 3.5764 -1.3554
12 6 7.5370 4.7750 -2.0422
13 6 8.5395 4.9892 -2.9675
14 6 9.4831 3.9991 -3.2084
15 8 10.4695 4.2064 -4.1178
16 6 10.4110 5.3466 -4.8351
17 1 9.6521 6.0834 -4.6171
18 6 11.3252 5.5732 -5.8527
19 7 12.2499 4.6760 -6.1180
20 14 11.2436 7.1525 -6.8469
21 1 10.1212 7.9906 -6.3537
22 1 12.5196 7.8975 -6.6980
23 1 11.0256 6.8254 -8.2789
24 6 9.4150 2.7961 -2.5179
25 6 8.4101 2.5880 -1.5938
26 6 4.0396 2.7386 -0.1226
27 1 3.2462 3.3503 -0.5519
28 6 4.4280 3.2766 1.2559
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 3.5083 0.7917 -2.1382
33 1 4.3058 -0.4567 -1.1236
34 1 5.8374 1.3263 -2.4609
35 1 6.2529 0.9117 -0.7705
36 1 6.7371 2.6743 0.4334
37 1 6.0884 4.2979 0.0999
38 1 6.8053 5.5461 -1.8513
39 1 8.5896 5.9256 -3.5032
40 1 12.8892 4.8343 -6.8301
41 1 10.1472 2.0241 -2.7034
42 1 8.3563 1.6526 -1.0568
43 1 4.7742 4.3058 1.1599
44 1 3.5610 3.2450 1.9158
45 1 5.2256 2.6625 1.6742
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000787329272.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:00:43
Heat of formation + Delta-G solvation = -74.770066 kcal
Electronic energy + Delta-G solvation = -26380.580183 eV
Core-core repulsion = 22557.273616 eV
Total energy + Delta-G solvation = -3823.306567 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.11008 -39.56270 -38.71379 -36.82227 -36.38739 -33.08066 -32.19005 -31.54531
-30.14455 -29.41307 -27.99871 -26.07827 -25.66795 -24.54459 -22.68963 -21.91488
-21.24185 -20.43271 -19.35572 -18.08217 -17.93529 -17.18283 -16.90022 -16.72514
-15.74139 -15.52676 -14.90461 -14.53411 -14.32104 -14.19975 -14.02061 -13.59652
-13.55054 -13.40544 -13.21638 -12.76600 -12.67880 -12.65431 -12.39170 -12.22000
-12.02501 -11.69284 -11.63495 -11.35186 -11.25065 -11.15349 -11.10765 -10.91171
-10.71718 -10.62264 -10.56066 -10.41675 -10.38942 -9.29286 -8.81492 -8.26167
-8.12945 -7.14027 -6.43084 -4.01538 1.89104 2.25167 2.29576 2.39117
3.13718 3.15720 3.21153 3.89455 3.98774 4.15893 4.32722 4.48681
4.70627 4.74095 4.77600 4.82762 4.99591 5.06831 5.12033 5.13801
5.18263 5.26113 5.31896 5.38312 5.42185 5.47131 5.64658 5.67565
5.79271 5.81312 5.91902 5.95172 6.02135 6.05076 6.13752 6.24807
6.45647 6.73540 6.90213 7.00794 7.04938 7.14266 7.29572 7.42944
7.45380 7.48270 7.86626 8.02553 9.03040 9.73602 10.75137
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.026415 B = 0.002302 C = 0.002290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1059.741407 B =12157.849381 C =12223.549824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.359 6.359
3 C 0.473 3.527
4 O -0.502 6.502
5 C -0.104 4.104
6 H 0.114 0.886
7 C -0.116 4.116
8 C 0.046 3.954
9 N -0.515 5.515
10 C 0.103 3.897
11 C -0.179 4.179
12 C -0.050 4.050
13 C -0.235 4.235
14 C 0.155 3.845
15 O -0.179 6.179
16 C -0.390 4.390
17 H 0.092 0.908
18 C 0.038 3.962
19 N -0.864 5.864
20 Si 0.941 3.059
21 H -0.267 1.267
22 H -0.276 1.276
23 H -0.276 1.276
24 C -0.194 4.194
25 C -0.068 4.068
26 C 0.080 3.920
27 H 0.103 0.897
28 C -0.171 4.171
29 H 0.101 0.899
30 H 0.062 0.938
31 H 0.063 0.937
32 H 0.080 0.920
33 H 0.086 0.914
34 H 0.090 0.910
35 H 0.052 0.948
36 H 0.037 0.963
37 H 0.080 0.920
38 H 0.106 0.894
39 H 0.126 0.874
40 H 0.269 0.731
41 H 0.115 0.885
42 H 0.106 0.894
43 H 0.073 0.927
44 H 0.059 0.941
45 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.785 -8.591 13.582 24.722
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.275 6.275
3 C 0.316 3.684
4 O -0.389 6.389
5 C -0.124 4.124
6 H 0.132 0.868
7 C -0.154 4.154
8 C -0.081 4.081
9 N -0.239 5.239
10 C -0.023 4.023
11 C -0.180 4.180
12 C -0.069 4.069
13 C -0.254 4.254
14 C 0.101 3.899
15 O -0.083 6.083
16 C -0.466 4.466
17 H 0.110 0.890
18 C -0.166 4.166
19 N -0.499 5.499
20 Si 0.765 3.235
21 H -0.191 1.191
22 H -0.202 1.202
23 H -0.202 1.202
24 C -0.213 4.213
25 C -0.087 4.087
26 C -0.028 4.028
27 H 0.121 0.879
28 C -0.229 4.229
29 H 0.119 0.881
30 H 0.081 0.919
31 H 0.082 0.918
32 H 0.099 0.901
33 H 0.105 0.895
34 H 0.108 0.892
35 H 0.070 0.930
36 H 0.055 0.945
37 H 0.098 0.902
38 H 0.124 0.876
39 H 0.143 0.857
40 H 0.079 0.921
41 H 0.133 0.867
42 H 0.124 0.876
43 H 0.091 0.909
44 H 0.078 0.922
45 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -18.721 -8.134 12.914 24.154
hybrid contribution -0.125 0.352 0.200 0.424
sum -18.846 -7.782 13.114 24.242
Atomic orbital electron populations
1.23277 0.76330 1.03715 1.02613 1.86518 1.23424 1.33470 1.84089
1.23508 0.91664 0.81301 0.71959 1.90667 1.66971 1.36299 1.44950
1.22452 0.87504 1.00146 1.02301 0.86836 1.22729 0.97218 0.99975
0.95490 1.23086 0.95249 0.87231 1.02565 1.63916 1.04093 1.17992
1.37884 1.21141 0.88528 0.99175 0.93474 1.19089 0.98863 0.96128
1.03907 1.20557 0.96101 0.95905 0.94318 1.21160 0.98899 1.01134
1.04195 1.19394 0.87840 0.92889 0.89749 1.83977 1.40077 1.40446
1.43785 1.21375 1.16964 0.94693 1.13586 0.89015 1.25287 0.95320
0.99290 0.96699 1.70045 1.15949 1.33991 1.29889 0.85652 0.78572
0.79981 0.79257 1.19087 1.20195 1.20157 1.20159 1.02318 0.96762
1.02066 1.20462 0.94140 0.97258 0.96805 1.22470 0.94775 0.92595
0.92928 0.87946 1.22399 1.01673 1.02387 0.96425 0.88061 0.91923
0.91797 0.90140 0.89529 0.89205 0.93022 0.94484 0.90152 0.87577
0.85661 0.92121 0.86713 0.87629 0.90859 0.92245 0.92159
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.23 10.56 101.05 1.07 1.29 16
2 O -0.36 -3.32 10.55 -39.27 -0.41 -3.74 16
3 C 0.47 5.02 7.26 36.01 0.26 5.28 16
4 O -0.50 -6.61 15.23 -18.74 -0.29 -6.89 16
5 C -0.10 -0.97 2.96 -89.95 -0.27 -1.24 16
6 H 0.11 0.87 7.85 -51.93 -0.41 0.47 16
7 C -0.12 -1.07 6.50 -24.60 -0.16 -1.23 16
8 C 0.05 0.52 5.63 -2.30 -0.01 0.51 16
9 N -0.51 -6.51 5.15 -224.79 -1.16 -7.66 16
10 C 0.10 1.35 3.85 -4.97 -0.02 1.33 16
11 C -0.18 -2.97 5.11 -104.58 -0.53 -3.50 16
12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16
13 C -0.23 -5.12 9.17 -39.40 -0.36 -5.49 16
14 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16
15 O -0.18 -5.14 9.76 0.02 0.00 -5.14 16
16 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16
17 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16
18 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16
19 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16
20 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16
21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16
22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16
24 C -0.19 -4.04 9.99 -39.40 -0.39 -4.44 16
25 C -0.07 -1.17 8.94 -39.61 -0.35 -1.52 16
26 C 0.08 0.88 3.42 -66.73 -0.23 0.65 16
27 H 0.10 1.32 6.90 -51.93 -0.36 0.96 16
28 C -0.17 -1.60 7.83 37.15 0.29 -1.31 16
29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16
30 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16
31 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16
32 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16
33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
34 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16
35 H 0.05 0.54 7.02 -51.93 -0.36 0.18 16
36 H 0.04 0.44 6.77 -51.93 -0.35 0.09 16
37 H 0.08 0.99 5.97 -51.93 -0.31 0.68 16
38 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16
39 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16
40 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16
41 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16
42 H 0.11 1.51 7.51 -52.49 -0.39 1.12 16
43 H 0.07 0.70 6.41 -51.92 -0.33 0.36 16
44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
45 H 0.06 0.52 6.93 -51.93 -0.36 0.16 16
LS Contribution 365.28 15.07 5.50 5.50
Total: -1.00 -32.18 365.28 -8.16 -40.34
By element:
Atomic # 1 Polarization: 10.17 SS G_CDS: -6.38 Total: 3.78 kcal
Atomic # 6 Polarization: -16.03 SS G_CDS: -1.16 Total: -17.19 kcal
Atomic # 7 Polarization: -31.93 SS G_CDS: -0.40 Total: -32.33 kcal
Atomic # 8 Polarization: -15.07 SS G_CDS: -0.70 Total: -15.77 kcal
Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -32.18 -8.16 -40.34 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787329272.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.433 kcal
(2) G-P(sol) polarization free energy of solvation -32.181 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.613 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.770 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds