Wall clock time and date at job start Tue Mar 31 2020 12:00:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45195 * 1
3 3 C 1.34233 * 116.99995 * 2 1
4 4 O 1.20818 * 119.99692 * 0.02562 * 3 2 1
5 5 C 1.50699 * 119.99764 * 180.02562 * 3 2 1
6 6 H 1.09002 * 110.63143 * 298.34756 * 5 3 2
7 7 C 1.55140 * 110.70873 * 61.45456 * 5 3 2
8 8 C 1.54898 * 101.65447 * 154.20634 * 7 5 3
9 9 N 1.47847 * 104.79792 * 322.93395 * 8 7 5
10 10 C 1.46900 * 110.99996 * 146.36355 * 9 8 7
11 11 C 1.50702 * 109.47363 * 69.87421 * 10 9 8
12 12 C 1.38297 * 119.93318 * 89.99563 * 11 10 9
13 13 C 1.38095 * 120.07013 * 179.97438 * 12 11 10
14 14 C 1.38878 * 119.92879 * 0.02562 * 13 12 11
15 15 O 1.35760 * 120.06868 * 179.97438 * 14 13 12
16 16 C 1.34831 * 116.99715 * 354.46842 * 15 14 13
17 17 H 1.07997 * 120.00242 * 5.05103 * 16 15 14
18 18 C 1.38656 * 119.99822 * 185.05388 * 16 15 14
19 19 N 1.31551 * 119.99935 * 359.97438 * 18 16 15
20 20 Si 1.86797 * 119.99966 * 179.97438 * 18 16 15
21 21 H 1.48506 * 109.47247 * 0.02562 * 20 18 16
22 22 H 1.48502 * 109.46735 * 120.00106 * 20 18 16
23 23 H 1.48503 * 109.47635 * 240.00101 * 20 18 16
24 24 C 1.38878 * 119.86540 * 0.02562 * 14 13 12
25 25 C 1.38096 * 119.92779 * 359.97438 * 24 14 13
26 26 C 1.47443 * 108.56784 * 24.09150 * 9 8 7
27 27 H 1.09000 * 109.88677 * 239.60807 * 26 9 8
28 28 C 1.52994 * 109.88678 * 118.41649 * 26 9 8
29 29 H 1.08996 * 109.47298 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47201 * 299.99902 * 1 2 3
31 31 H 1.09000 * 109.47537 * 59.99976 * 1 2 3
32 32 H 1.09002 * 110.98642 * 36.11646 * 7 5 3
33 33 H 1.09001 * 110.99032 * 272.30523 * 7 5 3
34 34 H 1.09003 * 110.37799 * 204.09903 * 8 7 5
35 35 H 1.09002 * 110.46437 * 81.80838 * 8 7 5
36 36 H 1.08992 * 109.47109 * 309.87068 * 10 9 8
37 37 H 1.09000 * 109.46854 * 189.86963 * 10 9 8
38 38 H 1.08000 * 119.96366 * 0.25934 * 12 11 10
39 39 H 1.07999 * 120.03506 * 180.02562 * 13 12 11
40 40 H 0.96999 * 120.00238 * 179.97438 * 19 18 16
41 41 H 1.08001 * 120.03376 * 179.97438 * 24 14 13
42 42 H 1.08002 * 119.96622 * 179.97438 * 25 24 14
43 43 H 1.09007 * 109.47134 * 61.45458 * 28 26 9
44 44 H 1.09001 * 109.46994 * 181.45267 * 28 26 9
45 45 H 1.09003 * 109.47543 * 301.45555 * 28 26 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2748 -0.0006
6 1 3.9755 0.8110 0.8969
7 6 4.1499 0.6113 -1.2757
8 6 5.5011 1.3538 -1.4244
9 7 5.2150 2.7447 -1.0128
10 6 6.3775 3.3461 -0.3458
11 6 7.4724 3.5764 -1.3554
12 6 7.5370 4.7750 -2.0422
13 6 8.5395 4.9892 -2.9675
14 6 9.4831 3.9991 -3.2084
15 8 10.4695 4.2064 -4.1178
16 6 10.4110 5.3466 -4.8351
17 1 9.6521 6.0834 -4.6171
18 6 11.3252 5.5732 -5.8527
19 7 12.2499 4.6760 -6.1180
20 14 11.2436 7.1525 -6.8469
21 1 10.1212 7.9906 -6.3537
22 1 12.5196 7.8975 -6.6980
23 1 11.0256 6.8254 -8.2789
24 6 9.4150 2.7961 -2.5179
25 6 8.4101 2.5880 -1.5938
26 6 4.0396 2.7386 -0.1226
27 1 3.2462 3.3503 -0.5519
28 6 4.4280 3.2766 1.2559
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 3.5083 0.7917 -2.1382
33 1 4.3058 -0.4567 -1.1236
34 1 5.8374 1.3263 -2.4609
35 1 6.2529 0.9117 -0.7705
36 1 6.7371 2.6743 0.4334
37 1 6.0884 4.2979 0.0999
38 1 6.8053 5.5461 -1.8513
39 1 8.5896 5.9256 -3.5032
40 1 12.8892 4.8343 -6.8301
41 1 10.1472 2.0241 -2.7034
42 1 8.3563 1.6526 -1.0568
43 1 4.7742 4.3058 1.1599
44 1 3.5610 3.2450 1.9158
45 1 5.2256 2.6625 1.6742
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787329272.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:00:43
Heat of formation + Delta-G solvation = -95.193158 kcal
Electronic energy + Delta-G solvation = -26381.465794 eV
Core-core repulsion = 22557.273616 eV
Total energy + Delta-G solvation = -3824.192178 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.92078 -40.85711 -40.05243 -38.17460 -37.47700 -34.47070 -33.81222 -32.41177
-31.73759 -30.68664 -28.74340 -27.52419 -26.78617 -25.90797 -23.76312 -23.23953
-22.50952 -21.50015 -20.32531 -19.80975 -18.84637 -18.77234 -17.92909 -17.48200
-16.77805 -16.46571 -16.42220 -16.21896 -15.50538 -15.42190 -15.36452 -14.96107
-14.74503 -14.53539 -14.27453 -14.21520 -13.81058 -13.62588 -13.49454 -13.32522
-13.05366 -12.97388 -12.79444 -12.55087 -12.43996 -12.29899 -12.11755 -12.06082
-11.95285 -11.83593 -11.78951 -11.62106 -11.41794 -11.12481 -10.78210 -9.72276
-9.21531 -8.83909 -8.46083 -6.13536 0.65243 0.72410 1.10095 1.35182
1.43218 1.53294 1.68748 2.18405 2.77402 3.03637 3.22966 3.43868
3.55133 3.58714 3.78582 4.04822 4.08226 4.12195 4.23926 4.27052
4.29809 4.31213 4.34637 4.36497 4.54618 4.56689 4.65380 4.70385
4.70893 4.75128 4.84575 4.97561 5.03804 5.09959 5.11464 5.17026
5.24752 5.29167 5.34751 5.34858 5.61213 5.75727 5.85366 6.05353
6.11650 6.15299 6.29700 6.66623 6.99194 7.81055 8.77456
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.026415 B = 0.002302 C = 0.002290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1059.741407 B =12157.849381 C =12223.549824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.360 6.360
3 C 0.475 3.525
4 O -0.534 6.534
5 C -0.098 4.098
6 H 0.140 0.860
7 C -0.108 4.108
8 C 0.042 3.958
9 N -0.535 5.535
10 C 0.106 3.894
11 C -0.151 4.151
12 C -0.054 4.054
13 C -0.245 4.245
14 C 0.112 3.888
15 O -0.234 6.234
16 C -0.411 4.411
17 H 0.099 0.901
18 C -0.024 4.024
19 N -0.921 5.921
20 Si 1.018 2.982
21 H -0.253 1.253
22 H -0.268 1.268
23 H -0.268 1.268
24 C -0.203 4.203
25 C -0.056 4.056
26 C 0.083 3.917
27 H 0.078 0.922
28 C -0.167 4.167
29 H 0.132 0.868
30 H 0.063 0.937
31 H 0.058 0.942
32 H 0.067 0.933
33 H 0.111 0.889
34 H 0.069 0.931
35 H 0.069 0.931
36 H 0.064 0.936
37 H 0.092 0.908
38 H 0.131 0.869
39 H 0.113 0.887
40 H 0.272 0.728
41 H 0.113 0.887
42 H 0.148 0.852
43 H 0.071 0.929
44 H 0.063 0.937
45 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.056 -9.427 15.970 28.059
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.276 6.276
3 C 0.319 3.681
4 O -0.424 6.424
5 C -0.117 4.117
6 H 0.158 0.842
7 C -0.146 4.146
8 C -0.085 4.085
9 N -0.259 5.259
10 C -0.020 4.020
11 C -0.152 4.152
12 C -0.072 4.072
13 C -0.264 4.264
14 C 0.062 3.938
15 O -0.141 6.141
16 C -0.487 4.487
17 H 0.116 0.884
18 C -0.221 4.221
19 N -0.559 5.559
20 Si 0.837 3.163
21 H -0.177 1.177
22 H -0.192 1.192
23 H -0.193 1.193
24 C -0.223 4.223
25 C -0.074 4.074
26 C -0.025 4.025
27 H 0.096 0.904
28 C -0.225 4.225
29 H 0.150 0.850
30 H 0.082 0.918
31 H 0.077 0.923
32 H 0.086 0.914
33 H 0.129 0.871
34 H 0.087 0.913
35 H 0.087 0.913
36 H 0.082 0.918
37 H 0.110 0.890
38 H 0.149 0.851
39 H 0.131 0.869
40 H 0.081 0.919
41 H 0.131 0.869
42 H 0.165 0.835
43 H 0.089 0.911
44 H 0.082 0.918
45 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -21.042 -8.998 15.349 27.556
hybrid contribution 0.280 0.441 -0.287 0.596
sum -20.762 -8.558 15.061 27.040
Atomic orbital electron populations
1.23547 0.74901 1.05721 1.02430 1.86507 1.24862 1.32640 1.83587
1.23746 0.92165 0.81191 0.71040 1.90661 1.67755 1.37376 1.46580
1.22450 0.86741 0.99163 1.03396 0.84222 1.22683 0.95764 1.01160
0.94996 1.23107 0.96771 0.86922 1.01679 1.63729 1.04258 1.19112
1.38817 1.21174 0.87522 1.00787 0.92565 1.19626 0.98710 0.94527
1.02311 1.20881 0.95425 0.97545 0.93388 1.21227 0.99611 1.00335
1.05225 1.19955 0.88546 0.94948 0.90372 1.83938 1.42782 1.41261
1.46088 1.21821 1.17507 0.95166 1.14191 0.88360 1.26564 0.94661
1.03251 0.97672 1.70183 1.17567 1.36765 1.31419 0.84541 0.79159
0.75214 0.77361 1.17681 1.19247 1.19344 1.20443 1.03472 0.95725
1.02624 1.20875 0.92339 0.98904 0.95301 1.22325 0.93342 0.93522
0.93319 0.90404 1.22366 1.02366 1.02433 0.95330 0.85006 0.91830
0.92337 0.91373 0.87095 0.91285 0.91306 0.91849 0.88971 0.85075
0.86886 0.91887 0.86936 0.83477 0.91064 0.91833 0.90598
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.30 10.56 113.37 1.20 1.50 16
2 O -0.36 -5.76 10.55 -51.45 -0.54 -6.30 16
3 C 0.47 9.03 7.26 71.24 0.52 9.55 16
4 O -0.53 -13.44 15.23 21.99 0.33 -13.11 16
5 C -0.10 -1.50 2.96 -10.36 -0.03 -1.53 16
6 H 0.14 1.46 7.85 -2.39 -0.02 1.44 16
7 C -0.11 -1.64 6.50 31.98 0.21 -1.44 16
8 C 0.04 0.81 5.63 86.77 0.49 1.30 16
9 N -0.53 -11.76 5.15 -865.09 -4.45 -16.21 16
10 C 0.11 2.31 3.85 85.56 0.33 2.64 16
11 C -0.15 -4.55 5.11 -19.83 -0.10 -4.66 16
12 C -0.05 -1.90 9.69 22.25 0.22 -1.69 16
13 C -0.24 -10.92 9.17 22.39 0.21 -10.72 16
14 C 0.11 5.64 6.65 22.58 0.15 5.79 16
15 O -0.23 -14.28 9.76 -22.86 -0.22 -14.50 16
16 C -0.41 -24.36 9.49 67.92 0.64 -23.72 16
17 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16
18 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16
19 N -0.92 -57.15 13.67 21.61 0.30 -56.86 16
20 Si 1.02 43.73 29.55 68.60 2.03 45.76 16
21 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16
22 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16
23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16
24 C -0.20 -8.54 9.99 22.39 0.22 -8.32 16
25 C -0.06 -1.78 8.94 22.25 0.20 -1.58 16
26 C 0.08 1.58 3.42 45.26 0.15 1.73 16
27 H 0.08 1.90 6.90 -2.39 -0.02 1.88 16
28 C -0.17 -2.49 7.83 71.98 0.56 -1.93 16
29 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16
30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16
31 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16
32 H 0.07 1.21 8.04 -2.39 -0.02 1.19 16
33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16
34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
35 H 0.07 1.09 7.02 -2.39 -0.02 1.08 16
36 H 0.06 1.11 6.77 -2.39 -0.02 1.10 16
37 H 0.09 1.86 5.97 -2.39 -0.01 1.85 16
38 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16
39 H 0.11 5.21 5.64 -2.91 -0.02 5.20 16
40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16
41 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16
42 H 0.15 3.50 7.51 -2.91 -0.02 3.47 16
43 H 0.07 1.10 6.41 -2.38 -0.02 1.08 16
44 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
45 H 0.08 0.91 6.93 -2.39 -0.02 0.89 16
Total: -1.00 -75.72 365.28 3.87 -71.85
By element:
Atomic # 1 Polarization: 22.39 SS G_CDS: 1.00 Total: 23.39 kcal
Atomic # 6 Polarization: -39.44 SS G_CDS: 5.43 Total: -34.01 kcal
Atomic # 7 Polarization: -68.91 SS G_CDS: -4.16 Total: -73.07 kcal
Atomic # 8 Polarization: -33.48 SS G_CDS: -0.43 Total: -33.91 kcal
Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal
Total: -75.72 3.87 -71.85 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787329272.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.343 kcal
(2) G-P(sol) polarization free energy of solvation -75.719 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.062 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.850 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.193 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds