Wall clock time and date at job start Tue Mar 31 2020 12:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00675 * 2 1 4 4 O 1.20826 * 119.99818 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00464 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.29152 * 60.67000 * 5 3 2 7 7 C 1.54259 * 110.32218 * 298.54479 * 5 3 2 8 8 C 1.54381 * 105.05986 * 241.00184 * 7 5 3 9 9 N 1.48558 * 104.59638 * 336.14529 * 8 7 5 10 10 C 1.46904 * 110.99932 * 159.04056 * 9 8 7 11 11 C 1.50694 * 109.47155 * 69.87328 * 10 9 8 12 12 C 1.38297 * 119.93405 * 269.72671 * 11 10 9 13 13 C 1.38104 * 120.06879 * 179.72606 * 12 11 10 14 14 C 1.38874 * 119.92819 * 0.56814 * 13 12 11 15 15 O 1.35752 * 120.06413 * 179.67819 * 14 13 12 16 16 C 1.34834 * 116.99937 * 174.48743 * 15 14 13 17 17 H 1.08002 * 119.99650 * 5.06185 * 16 15 14 18 18 C 1.38650 * 120.00511 * 185.06430 * 16 15 14 19 19 N 1.31557 * 119.99718 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00232 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47364 * 89.99709 * 20 18 16 22 22 H 1.48502 * 109.46807 * 209.99796 * 20 18 16 23 23 H 1.48502 * 109.46910 * 329.99302 * 20 18 16 24 24 C 1.38872 * 119.86675 * 359.70645 * 14 13 12 25 25 C 1.38101 * 119.93102 * 359.97438 * 24 14 13 26 26 C 1.48561 * 104.22132 * 39.48551 * 9 8 7 27 27 H 1.08995 * 110.41554 * 79.29318 * 26 9 8 28 28 C 1.52995 * 110.41193 * 201.74108 * 26 9 8 29 29 H 1.08998 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46654 * 300.00094 * 1 2 3 31 31 H 1.09006 * 109.46757 * 59.99546 * 1 2 3 32 32 H 1.08995 * 110.32638 * 122.10676 * 7 5 3 33 33 H 1.08999 * 110.32387 * 359.89764 * 7 5 3 34 34 H 1.09000 * 110.41197 * 217.36326 * 8 7 5 35 35 H 1.09000 * 110.41290 * 94.92867 * 8 7 5 36 36 H 1.09001 * 109.47060 * 309.87510 * 10 9 8 37 37 H 1.08997 * 109.47174 * 189.87789 * 10 9 8 38 38 H 1.08001 * 119.96611 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.03353 * 180.26931 * 13 12 11 40 40 H 0.97003 * 120.00122 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.03873 * 180.02562 * 24 14 13 42 42 H 1.07996 * 119.96953 * 179.97438 * 25 24 14 43 43 H 1.08998 * 109.47384 * 58.54397 * 28 26 9 44 44 H 1.09001 * 109.47039 * 178.54447 * 28 26 9 45 45 H 1.09003 * 109.46875 * 298.54404 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9697 0.7945 -0.8921 7 6 4.1381 0.6122 1.2698 8 6 4.8975 1.7388 2.0027 9 7 5.2357 2.7171 0.9371 10 6 5.5068 4.0436 1.5070 11 6 6.8055 4.0065 2.2704 12 6 6.8059 3.6889 3.6164 13 6 7.9951 3.6486 4.3175 14 6 9.1900 3.9389 3.6722 15 8 10.3598 3.9065 4.3602 16 6 11.4924 4.0857 3.6508 17 1 11.4385 4.3270 2.5995 18 6 12.7261 3.9602 4.2709 19 7 12.7917 3.6667 5.5516 20 14 14.2951 4.2092 3.2882 21 1 14.6914 5.6393 3.3424 22 1 15.3784 3.3731 3.8650 23 1 14.0627 3.8131 1.8760 24 6 9.1858 4.2631 2.3218 25 6 7.9941 4.2953 1.6247 26 6 4.0286 2.7460 0.0717 27 1 3.2532 3.3663 0.5212 28 6 4.3846 3.2625 -1.3238 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.8219 -0.1932 1.0018 33 1 3.3301 0.2316 1.8946 34 1 5.8054 1.3486 2.4626 35 1 4.2582 2.2016 2.7546 36 1 4.6968 4.3218 2.1812 37 1 5.5785 4.7766 0.7034 38 1 5.8757 3.4683 4.1189 39 1 7.9952 3.3962 5.3676 40 1 13.6549 3.5786 5.9854 41 1 10.1135 4.4889 1.8171 42 1 7.9900 4.5477 0.5747 43 1 5.1479 2.6214 -1.7647 44 1 3.4944 3.2530 -1.9528 45 1 4.7651 4.2811 -1.2479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787329277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:48 Heat of formation + Delta-G solvation = -82.321549 kcal Electronic energy + Delta-G solvation = -26364.443797 eV Core-core repulsion = 22540.809773 eV Total energy + Delta-G solvation = -3823.634023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09625 -39.38003 -38.64348 -36.82876 -36.39930 -33.07815 -32.15768 -31.54790 -30.15943 -29.43393 -28.04700 -26.29448 -25.51313 -24.24738 -22.61421 -21.94116 -21.21383 -20.19327 -20.03244 -17.96079 -17.82988 -17.27675 -16.89565 -16.65130 -15.48147 -15.17604 -15.06260 -14.58796 -14.48404 -14.19384 -13.79713 -13.65844 -13.51849 -13.47596 -13.35796 -12.98212 -12.67399 -12.47172 -12.25034 -12.15307 -12.02148 -11.68269 -11.53710 -11.32241 -11.25491 -11.15507 -11.13060 -10.91689 -10.75132 -10.64581 -10.53083 -10.48012 -10.40901 -9.30604 -8.82335 -8.46500 -8.13998 -7.15484 -6.43659 -4.02298 1.87896 2.22679 2.26767 2.40269 3.13670 3.14849 3.19661 3.94310 3.98187 4.18050 4.37881 4.53243 4.68240 4.73704 4.80837 4.86555 5.04737 5.11197 5.13442 5.18551 5.26128 5.29227 5.33966 5.36980 5.51255 5.59348 5.66906 5.75042 5.77830 5.83839 5.90313 5.94163 5.98872 6.04517 6.14360 6.23878 6.44178 6.72062 6.80050 6.95753 7.01141 7.10983 7.27726 7.41526 7.43927 7.47089 7.85303 8.01696 9.02214 9.72636 10.74416 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029106 B = 0.002315 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.765503 B =12092.606863 C =12305.824538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.468 3.532 4 O -0.506 6.506 5 C -0.084 4.084 6 H 0.120 0.880 7 C -0.112 4.112 8 C 0.034 3.966 9 N -0.496 5.496 10 C 0.104 3.896 11 C -0.178 4.178 12 C -0.068 4.068 13 C -0.193 4.193 14 C 0.156 3.844 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.267 1.267 24 C -0.235 4.235 25 C -0.049 4.049 26 C 0.067 3.933 27 H 0.069 0.931 28 C -0.135 4.135 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.270 0.730 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.390 -5.988 -11.674 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.393 6.393 5 C -0.104 4.104 6 H 0.138 0.862 7 C -0.150 4.150 8 C -0.094 4.094 9 N -0.221 5.221 10 C -0.023 4.023 11 C -0.179 4.179 12 C -0.086 4.086 13 C -0.213 4.213 14 C 0.102 3.898 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.254 4.254 25 C -0.068 4.068 26 C -0.041 4.041 27 H 0.087 0.913 28 C -0.193 4.193 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.144 0.856 42 H 0.125 0.875 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.900 -5.901 -11.550 23.753 hybrid contribution -0.157 0.424 -0.044 0.454 sum -20.057 -5.477 -11.594 23.805 Atomic orbital electron populations 1.23283 0.76344 1.03748 1.02568 1.86520 1.23395 1.33415 1.84045 1.23749 0.92024 0.81280 0.71842 1.90662 1.67102 1.36339 1.45172 1.21893 0.86472 0.99269 1.02775 0.86232 1.22313 0.99910 0.98716 0.94075 1.23147 0.99883 0.92749 0.93625 1.65516 1.32392 1.07976 1.16205 1.20958 0.94690 0.89747 0.96922 1.19003 0.93748 1.11330 0.93818 1.20465 0.96231 0.98473 0.93464 1.20158 0.90472 1.10466 1.00181 1.19390 0.87644 0.92231 0.90568 1.83977 1.11114 1.78013 1.35108 1.21325 0.81486 1.49373 0.94498 0.89060 1.25288 0.98540 0.96560 0.96185 1.70041 1.25969 1.44393 1.09439 0.85716 0.79999 0.78567 0.79181 1.19912 1.20280 1.19174 1.21154 0.98596 1.10678 0.94980 1.20552 0.91526 0.96671 0.98024 1.22595 0.92530 0.92804 0.96191 0.91271 1.21708 1.01337 1.01822 0.94432 0.88009 0.91896 0.91887 0.89310 0.90821 0.88794 0.93797 0.94646 0.90598 0.87634 0.86689 0.92059 0.85637 0.87534 0.91530 0.92511 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.33 10.52 -39.24 -0.41 -3.74 16 3 C 0.47 4.99 7.05 36.00 0.25 5.24 16 4 O -0.51 -6.62 15.22 -18.75 -0.29 -6.90 16 5 C -0.08 -0.82 3.11 -90.39 -0.28 -1.10 16 6 H 0.12 0.99 7.84 -51.93 -0.41 0.59 16 7 C -0.11 -1.07 6.62 -25.35 -0.17 -1.23 16 8 C 0.03 0.40 5.48 -2.18 -0.01 0.39 16 9 N -0.50 -6.28 5.04 -223.57 -1.13 -7.41 16 10 C 0.10 1.42 4.91 -4.98 -0.02 1.40 16 11 C -0.18 -2.98 5.10 -104.58 -0.53 -3.52 16 12 C -0.07 -1.18 8.74 -39.61 -0.35 -1.53 16 13 C -0.19 -4.06 9.99 -39.40 -0.39 -4.45 16 14 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 15 O -0.18 -5.11 9.76 0.03 0.00 -5.11 16 16 C -0.39 -10.92 9.49 30.88 0.29 -10.63 16 17 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16 20 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 C -0.23 -5.09 9.17 -39.40 -0.36 -5.45 16 25 C -0.05 -0.90 9.69 -39.60 -0.38 -1.28 16 26 C 0.07 0.74 2.21 -66.07 -0.15 0.60 16 27 H 0.07 0.86 6.80 -51.93 -0.35 0.51 16 28 C -0.14 -1.34 9.34 37.16 0.35 -0.99 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.65 7.69 -51.93 -0.40 0.25 16 34 H 0.09 1.23 7.83 -51.93 -0.41 0.82 16 35 H 0.04 0.51 7.82 -51.93 -0.41 0.11 16 36 H 0.04 0.47 7.82 -51.93 -0.41 0.06 16 37 H 0.08 0.98 7.22 -51.93 -0.37 0.60 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 42 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 43 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.62 7.36 -51.93 -0.38 0.23 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -31.87 371.17 -8.18 -40.06 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.64 Total: 3.39 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -1.04 Total: -16.82 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: -0.37 Total: -32.00 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.70 Total: -15.75 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.87 -8.18 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787329277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.265 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds