Wall clock time and date at job start Tue Mar 31 2020 12:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.50981 * 2 1 4 4 C 1.53098 * 109.50757 * 239.90950 * 2 1 3 5 5 N 1.47010 * 109.26060 * 183.17330 * 4 2 1 6 6 C 1.46900 * 111.00260 * 182.39064 * 5 4 2 7 7 C 1.53007 * 109.46864 * 75.87467 * 6 5 4 8 8 O 1.45199 * 109.47156 * 63.72025 * 7 6 5 9 9 C 1.34800 * 117.00118 * 180.02562 * 8 7 6 10 10 O 1.21532 * 119.99887 * 359.97438 * 9 8 7 11 11 C 1.47295 * 120.00122 * 180.02562 * 9 8 7 12 12 C 1.39290 * 120.28454 * 353.98383 * 11 9 8 13 13 C 1.38205 * 120.08080 * 179.97438 * 12 11 9 14 14 C 1.38836 * 120.68750 * 0.02562 * 13 12 11 15 15 C 1.37604 * 120.58009 * 359.71431 * 14 13 12 16 16 C 1.40710 * 119.88547 * 0.54139 * 15 14 13 17 17 C 1.40859 * 120.33072 * 179.74295 * 16 15 14 18 18 H 1.07998 * 120.00392 * 143.91760 * 17 16 15 19 19 C 1.40296 * 119.99951 * 323.91436 * 17 16 15 20 20 N 1.30616 * 119.99668 * 338.38959 * 19 17 16 21 21 Si 1.86800 * 120.00069 * 158.39006 * 19 17 16 22 22 H 1.48499 * 109.47281 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47179 * 120.00183 * 21 19 17 24 24 H 1.48502 * 109.46801 * 240.00009 * 21 19 17 25 25 C 1.47015 * 110.74863 * 58.61851 * 5 4 2 26 26 C 1.53092 * 109.25920 * 301.38303 * 25 5 4 27 27 O 1.43012 * 109.26053 * 56.85150 * 26 25 5 28 28 H 1.08994 * 109.47423 * 180.08853 * 1 2 3 29 29 H 1.09004 * 109.46900 * 300.08906 * 1 2 3 30 30 H 1.09001 * 109.46851 * 60.08317 * 1 2 3 31 31 H 1.09001 * 109.50337 * 63.24406 * 4 2 1 32 32 H 1.08994 * 109.50534 * 303.11328 * 4 2 1 33 33 H 1.09001 * 109.47214 * 315.87916 * 6 5 4 34 34 H 1.08996 * 109.47288 * 195.87025 * 6 5 4 35 35 H 1.09004 * 109.47049 * 303.72842 * 7 6 5 36 36 H 1.08992 * 109.47340 * 183.72317 * 7 6 5 37 37 H 1.08002 * 119.95873 * 359.97438 * 12 11 9 38 38 H 1.07999 * 119.65513 * 179.97438 * 13 12 11 39 39 H 1.08001 * 119.70900 * 179.97438 * 14 13 12 40 40 H 1.07990 * 120.05784 * 180.30760 * 15 14 13 41 41 H 0.96996 * 120.00477 * 356.46557 * 20 19 17 42 42 H 1.09000 * 109.50757 * 61.32337 * 25 5 4 43 43 H 1.09006 * 109.50330 * 181.44926 * 25 5 4 44 44 H 1.09001 * 109.50834 * 296.91495 * 26 25 5 45 45 H 1.09002 * 109.54341 * 176.80924 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2486 5 7 3.5093 -0.7872 -1.2052 6 6 4.0446 -1.4252 -2.4153 7 6 3.9758 -0.4403 -3.5842 8 8 4.8324 0.6991 -3.3081 9 6 4.8852 1.6664 -4.2455 10 8 4.2335 1.5601 -5.2657 11 6 5.7337 2.8517 -4.0337 12 6 6.3856 3.0406 -2.8173 13 6 7.1811 4.1540 -2.6233 14 6 7.3408 5.0950 -3.6315 15 6 6.7140 4.9333 -4.8458 16 6 5.8941 3.8116 -5.0677 17 6 5.2437 3.6395 -6.3052 18 1 5.1229 2.6492 -6.7187 19 6 4.7527 4.7547 -7.0006 20 7 4.5073 5.8669 -6.3612 21 14 4.4499 4.6488 -8.8409 22 1 4.8050 3.2901 -9.3237 23 1 3.0166 4.9160 -9.1229 24 1 5.2879 5.6565 -9.5391 25 6 3.9647 -1.4870 0.0048 26 6 3.4343 -0.7559 1.2408 27 8 2.0083 -0.6761 1.1660 28 1 -0.3634 -1.0276 0.0016 29 1 -0.3633 0.5152 0.8892 30 1 -0.3633 0.5126 -0.8908 31 1 1.7267 -0.1791 -2.1391 32 1 1.6337 -1.7340 -1.2761 33 1 3.4539 -2.3105 -2.6509 34 1 5.0815 -1.7149 -2.2450 35 1 2.9483 -0.0996 -3.7122 36 1 4.3111 -0.9345 -4.4960 37 1 6.2692 2.3162 -2.0248 38 1 7.6830 4.2938 -1.6773 39 1 7.9659 5.9595 -3.4627 40 1 6.8481 5.6680 -5.6258 41 1 4.6155 5.9067 -5.3982 42 1 3.5881 -2.5098 -0.0028 43 1 5.0544 -1.5000 0.0293 44 1 3.8537 0.2496 1.2769 45 1 3.7216 -1.3025 2.1391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800122689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:04 Heat of formation + Delta-G solvation = -132.502962 kcal Electronic energy + Delta-G solvation = -27084.873934 eV Core-core repulsion = 23259.063882 eV Total energy + Delta-G solvation = -3825.810053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.24750 -40.64226 -39.27250 -37.53871 -36.52290 -35.78963 -33.80156 -32.26702 -31.50689 -31.14983 -28.87519 -27.35636 -26.75506 -24.78491 -23.76921 -22.99843 -22.53168 -21.63671 -21.30727 -19.89191 -18.47638 -17.77739 -17.57539 -17.31972 -16.80415 -16.57599 -16.35067 -15.95063 -15.92763 -15.71012 -15.53950 -15.15998 -14.87084 -14.43001 -14.20597 -13.99424 -13.65136 -13.63305 -13.37281 -13.18754 -13.02307 -12.90613 -12.77220 -12.72597 -12.49180 -12.16164 -12.10655 -12.02426 -11.96361 -11.57693 -11.50234 -11.42923 -10.96476 -10.77642 -10.64032 -9.71002 -9.55154 -9.40059 -9.22351 -6.55023 0.24400 0.88237 1.45913 1.60895 1.76887 1.96238 1.98769 2.28036 2.62920 2.66629 2.80939 3.46221 3.66466 3.83087 3.91885 4.01831 4.08962 4.16739 4.17421 4.26720 4.30668 4.33730 4.37692 4.45538 4.54693 4.58242 4.64952 4.66920 4.74245 4.82078 4.83789 4.89513 4.93163 5.04165 5.06534 5.19915 5.36837 5.52474 5.63083 5.69050 5.82074 5.90201 5.92623 5.93208 6.16594 6.17727 6.27580 6.69624 6.78708 7.23793 7.96815 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.003396 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.985669 B = 8243.405334 C = 8913.752754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.087 3.913 3 H 0.050 0.950 4 C 0.025 3.975 5 N -0.553 5.553 6 C 0.069 3.931 7 C 0.069 3.931 8 O -0.348 6.348 9 C 0.502 3.498 10 O -0.549 6.549 11 C -0.276 4.276 12 C -0.024 4.024 13 C -0.245 4.245 14 C -0.063 4.063 15 C -0.222 4.222 16 C 0.102 3.898 17 C -0.509 4.509 18 H 0.080 0.920 19 C 0.002 3.998 20 N -0.807 5.807 21 Si 1.120 2.880 22 H -0.272 1.272 23 H -0.268 1.268 24 H -0.255 1.255 25 C 0.023 3.977 26 C 0.060 3.940 27 O -0.396 6.396 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.095 0.905 41 H 0.283 0.717 42 H 0.050 0.950 43 H 0.098 0.902 44 H 0.050 0.950 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 -12.552 11.376 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.029 3.971 3 H 0.068 0.932 4 C -0.103 4.103 5 N -0.278 5.278 6 C -0.059 4.059 7 C -0.005 4.005 8 O -0.266 6.266 9 C 0.353 3.647 10 O -0.442 6.442 11 C -0.278 4.278 12 C -0.042 4.042 13 C -0.264 4.264 14 C -0.081 4.081 15 C -0.241 4.241 16 C 0.098 3.902 17 C -0.536 4.536 18 H 0.097 0.903 19 C -0.215 4.215 20 N -0.429 5.429 21 Si 0.937 3.063 22 H -0.197 1.197 23 H -0.193 1.193 24 H -0.179 1.179 25 C -0.105 4.105 26 C -0.016 4.016 27 O -0.316 6.316 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.117 0.883 44 H 0.069 0.931 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.074 -11.299 9.989 15.391 hybrid contribution 0.212 -1.435 0.859 1.686 sum -2.861 -12.734 10.848 16.971 Atomic orbital electron populations 1.21737 0.91297 1.03404 1.03320 1.22174 0.96002 0.94848 0.84057 0.93216 1.22846 0.87801 1.00393 0.99294 1.62066 1.09034 1.54024 1.02696 1.22153 1.02295 0.93478 0.87966 1.23103 0.93385 0.85281 0.98771 1.86603 1.63347 1.30168 1.46433 1.21354 0.80015 0.82911 0.80425 1.90715 1.45069 1.78852 1.29586 1.19117 1.11531 0.99607 0.97577 1.21206 0.92275 0.96357 0.94368 1.20840 1.07601 0.97226 1.00734 1.21228 0.96419 0.98005 0.92458 1.21184 1.03277 1.00926 0.98703 1.17840 0.90113 0.90810 0.91431 1.21102 1.31884 0.97528 1.03102 0.90251 1.28506 0.91228 0.90198 1.11566 1.70452 1.31257 1.28389 1.12853 0.82963 0.78419 0.77496 0.67402 1.19667 1.19250 1.17941 1.22829 1.01922 0.96101 0.89642 1.22807 0.80099 1.00548 0.98163 1.87941 1.22183 1.78358 1.43093 0.91222 0.91189 0.90226 0.90789 0.92923 0.90025 0.88501 0.92965 0.91318 0.85437 0.84522 0.85089 0.88636 0.90437 0.93173 0.88339 0.93134 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.57 71.98 0.69 -1.86 16 2 C 0.09 2.00 3.43 30.63 0.10 2.10 16 3 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.02 0.57 4.75 86.32 0.41 0.98 16 5 N -0.55 -13.30 4.59 -895.22 -4.11 -17.41 16 6 C 0.07 1.55 5.40 86.31 0.47 2.02 16 7 C 0.07 2.19 5.66 71.98 0.41 2.60 16 8 O -0.35 -14.04 9.42 -57.11 -0.54 -14.58 16 9 C 0.50 24.86 7.84 70.20 0.55 25.41 16 10 O -0.55 -30.10 13.42 19.73 0.26 -29.83 16 11 C -0.28 -14.02 5.92 -19.71 -0.12 -14.14 16 12 C -0.02 -1.03 9.60 22.52 0.22 -0.81 16 13 C -0.25 -9.66 10.03 22.40 0.22 -9.44 16 14 C -0.06 -2.62 10.01 22.26 0.22 -2.40 16 15 C -0.22 -11.06 7.98 22.72 0.18 -10.88 16 16 C 0.10 5.57 5.10 -21.10 -0.11 5.46 16 17 C -0.51 -29.04 7.54 23.41 0.18 -28.86 16 18 H 0.08 4.78 6.10 -2.91 -0.02 4.76 16 19 C 0.00 0.09 4.98 85.37 0.43 0.51 16 20 N -0.81 -44.16 12.73 21.88 0.28 -43.88 16 21 Si 1.12 45.82 29.99 68.60 2.06 47.88 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 23 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 25 C 0.02 0.42 5.60 86.31 0.48 0.90 16 26 C 0.06 1.15 7.01 72.01 0.50 1.66 16 27 O -0.40 -9.19 10.47 -148.98 -1.56 -10.75 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.86 6.76 -2.39 -0.02 1.85 16 32 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.08 1.45 7.99 -2.39 -0.02 1.43 16 34 H 0.10 1.99 7.86 -2.39 -0.02 1.97 16 35 H 0.05 1.74 6.78 -2.38 -0.02 1.73 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.13 4.88 7.62 -2.91 -0.02 4.85 16 38 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 39 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.10 4.89 7.17 -2.92 -0.02 4.87 16 41 H 0.28 16.08 6.76 -92.71 -0.63 15.46 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 1.62 8.02 -2.38 -0.02 1.60 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -67.54 366.79 2.35 -65.19 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 1.12 Total: 30.13 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 4.84 Total: -26.75 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -3.83 Total: -61.29 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -1.83 Total: -55.16 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.06 Total: 47.88 kcal Total: -67.54 2.35 -65.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800122689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.311 kcal (2) G-P(sol) polarization free energy of solvation -67.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds