Wall clock time and date at job start Tue Mar 31 2020 12:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.52364 * 2 1 4 4 C 1.53095 * 109.57322 * 239.85205 * 2 1 3 5 5 O 1.42904 * 109.41098 * 297.66587 * 4 2 1 6 6 C 1.42901 * 114.10026 * 298.84389 * 5 4 2 7 7 C 1.53088 * 109.41239 * 61.15819 * 6 5 4 8 8 C 1.53176 * 109.16716 * 302.38818 * 7 6 5 9 9 H 1.09001 * 109.54494 * 297.11994 * 8 7 6 10 10 C 1.52996 * 109.54574 * 176.84722 * 8 7 6 11 11 N 1.46498 * 109.47280 * 65.44893 * 10 8 7 12 12 C 1.34775 * 120.00275 * 180.02562 * 11 10 8 13 13 O 1.21583 * 120.00026 * 359.97438 * 12 11 10 14 14 C 1.47537 * 120.00070 * 180.02562 * 12 11 10 15 15 C 1.39667 * 120.19389 * 359.71686 * 14 12 11 16 16 C 1.37839 * 119.91664 * 179.74963 * 15 14 12 17 17 C 1.38569 * 120.32286 * 0.53256 * 16 15 14 18 18 C 1.38032 * 120.39830 * 359.74414 * 17 16 15 19 19 C 1.38827 * 120.07750 * 359.97438 * 18 17 16 20 20 O 1.35522 * 120.16680 * 180.02562 * 19 18 17 21 21 C 1.34816 * 116.99631 * 354.39883 * 20 19 18 22 22 H 1.08007 * 120.00034 * 5.06083 * 21 20 19 23 23 C 1.38697 * 119.99973 * 185.06655 * 21 20 19 24 24 N 1.31519 * 119.99647 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99996 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47471 * 89.99487 * 25 23 21 27 27 H 1.48498 * 109.47058 * 209.99722 * 25 23 21 28 28 H 1.48503 * 109.47319 * 329.99701 * 25 23 21 29 29 H 1.08996 * 109.47015 * 299.99829 * 1 2 3 30 30 H 1.09001 * 109.47320 * 59.99173 * 1 2 3 31 31 H 1.09002 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.48297 * 57.64992 * 4 2 1 33 33 H 1.09003 * 109.48383 * 177.68839 * 4 2 1 34 34 H 1.08994 * 109.48480 * 301.17611 * 6 5 4 35 35 H 1.09001 * 109.49015 * 181.14393 * 6 5 4 36 36 H 1.09009 * 109.52128 * 182.48444 * 7 6 5 37 37 H 1.08996 * 109.52540 * 62.29892 * 7 6 5 38 38 H 1.09004 * 109.47066 * 185.44663 * 10 8 7 39 39 H 1.08998 * 109.47337 * 305.44628 * 10 8 7 40 40 H 0.97006 * 119.99578 * 359.97438 * 11 10 8 41 41 H 1.07996 * 120.04472 * 0.02562 * 15 14 12 42 42 H 1.07993 * 119.83620 * 180.25470 * 16 15 14 43 43 H 1.07998 * 119.80431 * 179.76846 * 17 16 15 44 44 H 1.08003 * 119.95688 * 179.97438 * 18 17 16 45 45 H 0.97009 * 119.99591 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0428 -0.7245 -1.2474 5 8 1.6123 -2.0867 -1.2161 6 6 2.0997 -2.8271 -0.0952 7 6 1.5891 -2.1871 1.1983 8 6 2.0419 -0.7247 1.2486 9 1 3.1307 -0.6808 1.2749 10 6 1.4704 -0.0546 2.4997 11 7 2.0534 -0.6715 3.6937 12 6 1.6945 -0.2397 4.9189 13 8 0.8872 0.6622 5.0333 14 6 2.2821 -0.8607 6.1213 15 6 3.2062 -1.9003 5.9948 16 6 3.7554 -2.4728 7.1219 17 6 3.3872 -2.0296 8.3821 18 6 2.4709 -1.0069 8.5226 19 6 1.9116 -0.4144 7.3985 20 8 1.0122 0.5901 7.5344 21 6 0.6146 0.8903 8.7871 22 1 1.0711 0.3956 9.6317 23 6 -0.3807 1.8345 8.9913 24 7 -0.9363 2.4372 7.9628 25 14 -0.9310 2.2510 10.7271 26 1 -0.1072 3.3692 11.2527 27 1 -2.3600 2.6544 10.7099 28 1 -0.7632 1.0604 11.5987 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6466 -0.2384 -2.1388 33 1 3.1321 -0.6879 -1.2669 34 1 3.1896 -2.8181 -0.0996 35 1 1.7444 -3.8558 -0.1566 36 1 1.9955 -2.7239 2.0555 37 1 0.5003 -2.2323 1.2220 38 1 1.7120 1.0083 2.4851 39 1 0.3879 -0.1809 2.5172 40 1 2.6972 -1.3914 3.6024 41 1 3.4934 -2.2521 5.0150 42 1 4.4729 -3.2738 7.0224 43 1 3.8200 -2.4867 9.2596 44 1 2.1887 -0.6673 9.5082 45 1 -1.6321 3.0978 8.1057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804620645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:17 Heat of formation + Delta-G solvation = -114.809184 kcal Electronic energy + Delta-G solvation = -26948.760830 eV Core-core repulsion = 23123.718037 eV Total energy + Delta-G solvation = -3825.042793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41115 -40.78821 -39.66636 -38.02859 -36.78933 -34.66193 -34.31609 -32.73927 -31.96091 -30.57113 -28.73153 -27.70792 -27.31773 -24.85460 -24.09299 -23.60325 -22.80977 -21.52517 -19.97833 -19.84625 -19.15274 -17.90819 -17.25116 -17.15138 -16.80623 -16.41246 -16.32099 -16.03641 -15.87645 -15.78120 -15.50548 -15.33421 -15.00600 -14.74338 -14.29256 -14.14047 -13.93802 -13.67602 -13.55218 -13.36707 -12.99476 -12.80195 -12.69749 -12.53584 -12.46063 -12.33669 -12.13208 -12.10406 -11.88442 -11.48118 -11.39598 -11.08162 -10.83969 -10.64009 -10.35893 -10.09982 -9.77617 -9.03754 -8.45175 -6.16329 0.12353 0.72772 1.31590 1.43220 1.50820 2.09993 2.15299 2.27052 2.87479 3.03227 3.22406 3.46766 3.59211 3.70912 3.76315 3.97293 4.04203 4.08291 4.22585 4.29007 4.32660 4.38229 4.51326 4.58494 4.59485 4.65454 4.71418 4.79469 4.80851 4.83806 4.90885 4.98256 4.99484 5.07203 5.13873 5.18710 5.19782 5.23497 5.46770 5.48062 5.55549 5.61197 5.69650 5.95609 6.17150 6.33235 6.69966 6.94134 7.48957 7.80201 8.75405 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.003194 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.507521 B = 8763.996492 C =10242.013392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 H 0.088 0.912 4 C 0.069 3.931 5 O -0.400 6.400 6 C 0.062 3.938 7 C -0.153 4.153 8 C -0.084 4.084 9 H 0.098 0.902 10 C 0.131 3.869 11 N -0.715 5.715 12 C 0.546 3.454 13 O -0.571 6.571 14 C -0.246 4.246 15 C -0.029 4.029 16 C -0.200 4.200 17 C -0.040 4.040 18 C -0.259 4.259 19 C 0.148 3.852 20 O -0.190 6.190 21 C -0.428 4.428 22 H 0.107 0.893 23 C -0.023 4.023 24 N -0.906 5.906 25 Si 1.022 2.978 26 H -0.261 1.261 27 H -0.273 1.273 28 H -0.248 1.248 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.411 0.589 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.154 0.846 44 H 0.122 0.878 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.387 -12.511 -13.803 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.138 4.138 3 H 0.106 0.894 4 C -0.008 4.008 5 O -0.319 6.319 6 C -0.014 4.014 7 C -0.190 4.190 8 C -0.103 4.103 9 H 0.116 0.884 10 C 0.007 3.993 11 N -0.370 5.370 12 C 0.336 3.664 13 O -0.450 6.450 14 C -0.250 4.250 15 C -0.047 4.047 16 C -0.218 4.218 17 C -0.058 4.058 18 C -0.278 4.278 19 C 0.093 3.907 20 O -0.092 6.092 21 C -0.504 4.504 22 H 0.124 0.876 23 C -0.222 4.222 24 N -0.541 5.541 25 Si 0.841 3.159 26 H -0.186 1.186 27 H -0.198 1.198 28 H -0.171 1.171 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.249 0.751 41 H 0.178 0.822 42 H 0.183 0.817 43 H 0.171 0.829 44 H 0.140 0.860 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.398 -11.626 -14.106 21.030 hybrid contribution -0.470 0.714 1.136 1.422 sum 9.928 -10.912 -12.970 19.643 Atomic orbital electron populations 1.21845 0.95275 1.02015 1.01407 1.21748 0.96590 1.00534 0.94944 0.89376 1.22680 0.99187 0.81597 0.97311 1.87909 1.74831 1.23156 1.45989 1.22676 0.98913 0.95675 0.84172 1.22303 1.01896 0.95103 0.99717 1.21387 1.01325 0.95365 0.92177 0.88387 1.21348 0.97373 0.96635 0.83938 1.45621 1.47174 1.40121 1.04100 1.18572 0.81149 0.82327 0.84376 1.90929 1.35404 1.31619 1.87084 1.19320 1.09575 1.06254 0.89901 1.21303 0.91519 0.91074 1.00846 1.21186 1.05073 1.04441 0.91116 1.21441 0.92510 0.92425 0.99465 1.21306 1.05114 1.03642 0.97726 1.20099 0.88933 0.87151 0.94480 1.84181 1.50798 1.43518 1.30741 1.22043 1.21260 1.24742 0.82362 0.87589 1.26765 0.95235 0.95343 1.04819 1.70331 1.25201 1.25423 1.33187 0.84560 0.77776 0.79588 0.74023 1.18622 1.19754 1.17089 0.94175 0.91684 0.92444 0.87849 0.91505 0.91386 0.87913 0.89648 0.92178 0.93595 0.93653 0.75087 0.82152 0.81712 0.82859 0.85985 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.36 71.98 0.60 -2.50 16 2 C -0.12 -2.08 2.78 -10.70 -0.03 -2.11 16 3 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 4 C 0.07 0.99 6.26 72.01 0.45 1.44 16 5 O -0.40 -7.15 10.19 -148.98 -1.52 -8.67 16 6 C 0.06 0.86 6.84 72.01 0.49 1.35 16 7 C -0.15 -2.55 4.90 30.68 0.15 -2.40 16 8 C -0.08 -1.56 2.09 -10.68 -0.02 -1.58 16 9 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 10 C 0.13 3.80 4.47 86.38 0.39 4.19 16 11 N -0.71 -22.30 5.27 -466.29 -2.46 -24.76 16 12 C 0.55 24.94 7.76 86.70 0.67 25.61 16 13 O -0.57 -34.25 15.17 16.92 0.26 -33.99 16 14 C -0.25 -10.66 5.89 -19.99 -0.12 -10.78 16 15 C -0.03 -0.85 9.54 22.52 0.21 -0.64 16 16 C -0.20 -5.19 10.03 22.25 0.22 -4.97 16 17 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16 18 C -0.26 -11.07 9.16 22.36 0.20 -10.87 16 19 C 0.15 7.70 6.66 22.91 0.15 7.85 16 20 O -0.19 -12.21 7.84 0.80 0.01 -12.20 16 21 C -0.43 -26.15 9.49 67.93 0.64 -25.51 16 22 H 0.11 5.80 5.21 -2.91 -0.02 5.78 16 23 C -0.02 -1.35 5.49 84.85 0.47 -0.88 16 24 N -0.91 -59.81 13.67 21.62 0.30 -59.51 16 25 Si 1.02 44.58 29.55 68.60 2.03 46.61 16 26 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 28 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 29 H 0.04 1.00 6.51 -2.39 -0.02 0.99 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.26 6.14 -2.39 -0.01 1.25 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.22 7.31 -2.38 -0.02 1.21 16 37 H 0.06 1.25 6.62 -2.39 -0.02 1.23 16 38 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.05 1.54 6.68 -2.39 -0.02 1.53 16 40 H 0.41 9.01 5.74 -92.70 -0.53 8.48 16 41 H 0.16 3.05 6.40 -2.91 -0.02 3.03 16 42 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 43 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 44 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 45 H 0.27 16.34 8.31 -92.70 -0.77 15.57 16 Total: -1.00 -89.28 358.55 3.81 -85.47 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.49 Total: 29.87 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 4.71 Total: -22.81 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -2.16 Total: -84.27 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -1.26 Total: -54.87 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -89.28 3.81 -85.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804620645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.337 kcal (2) G-P(sol) polarization free energy of solvation -89.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds