Wall clock time and date at job start Tue Mar 31 2020 12:15:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09005 * 109.46801 * 2 1
4 4 C 1.50702 * 109.47062 * 119.99712 * 2 1 3
5 5 C 1.38238 * 119.99705 * 150.39164 * 4 2 1
6 6 C 1.38231 * 119.99587 * 179.97438 * 5 4 2
7 7 C 1.38232 * 120.00692 * 359.97438 * 6 5 4
8 8 C 1.38242 * 119.99770 * 359.97438 * 7 6 5
9 9 C 1.38233 * 119.99993 * 330.30069 * 4 2 1
10 10 N 1.46500 * 109.47438 * 240.00041 * 2 1 3
11 11 C 1.46493 * 119.99778 * 305.13377 * 10 2 1
12 12 C 1.34771 * 119.99883 * 125.13274 * 10 2 1
13 13 O 1.21278 * 120.00507 * 0.02562 * 12 10 2
14 14 C 1.50701 * 119.99799 * 180.02562 * 12 10 2
15 15 O 1.45195 * 109.47201 * 180.02562 * 14 12 10
16 16 C 1.34238 * 117.00305 * 179.97438 * 15 14 12
17 17 O 1.20817 * 119.99606 * 0.02562 * 16 15 14
18 18 C 1.50700 * 119.99832 * 179.97438 * 16 15 14
19 19 C 1.53006 * 109.46758 * 180.02562 * 18 16 15
20 20 C 1.50691 * 109.47036 * 180.02562 * 19 18 16
21 21 H 1.07998 * 120.00304 * 0.02562 * 20 19 18
22 22 C 1.37875 * 120.00004 * 180.02562 * 20 19 18
23 23 N 1.31515 * 119.99869 * 0.02562 * 22 20 19
24 24 Si 1.86799 * 120.00376 * 179.97438 * 22 20 19
25 25 H 1.48506 * 109.47291 * 90.00106 * 24 22 20
26 26 H 1.48497 * 109.47419 * 210.00113 * 24 22 20
27 27 H 1.48505 * 109.47178 * 330.00428 * 24 22 20
28 28 H 1.09001 * 109.46988 * 299.99743 * 1 2 3
29 29 H 1.08999 * 109.47090 * 60.00204 * 1 2 3
30 30 H 1.09005 * 109.46801 * 179.97438 * 1 2 3
31 31 H 1.07999 * 120.00441 * 0.25801 * 5 4 2
32 32 H 1.08001 * 119.99734 * 179.97438 * 6 5 4
33 33 H 1.07999 * 120.00494 * 179.97438 * 7 6 5
34 34 H 1.08001 * 120.00270 * 179.97438 * 8 7 6
35 35 H 1.08003 * 120.00214 * 0.08682 * 9 4 2
36 36 H 1.08998 * 109.47235 * 95.29758 * 11 10 2
37 37 H 1.09003 * 109.47137 * 215.29585 * 11 10 2
38 38 H 1.09000 * 109.47410 * 335.30153 * 11 10 2
39 39 H 1.09006 * 109.47188 * 300.00135 * 14 12 10
40 40 H 1.09002 * 109.47141 * 60.00282 * 14 12 10
41 41 H 1.08994 * 109.47715 * 300.00294 * 18 16 15
42 42 H 1.09002 * 109.47168 * 60.00928 * 18 16 15
43 43 H 1.09002 * 109.46920 * 300.00536 * 19 18 16
44 44 H 1.09002 * 109.46739 * 59.99776 * 19 18 16
45 45 H 0.97004 * 120.00233 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2305
5 6 3.2441 -1.3749 1.1986
6 6 3.7051 -2.0261 2.3275
7 6 2.9548 -2.0122 3.4884
8 6 1.7435 -1.3468 3.5206
9 6 1.2823 -0.6958 2.3916
10 7 2.0184 -0.6906 -1.1962
11 6 1.5743 -2.0561 -1.4862
12 6 2.8763 -0.0696 -2.0297
13 8 3.2444 1.0607 -1.7893
14 6 3.3783 -0.7798 -3.2604
15 8 4.2829 0.0926 -3.9875
16 6 4.8221 -0.3933 -5.1167
17 8 4.5469 -1.5104 -5.4855
18 6 5.7698 0.4551 -5.9250
19 6 6.2354 -0.3294 -7.1533
20 6 7.1835 0.5186 -7.9612
21 1 7.4298 1.5171 -7.6314
22 6 7.7366 0.0199 -9.1215
23 7 7.4363 -1.1958 -9.5235
24 14 8.9114 1.0713 -10.1234
25 1 10.3022 0.8421 -9.6561
26 1 8.8043 0.7033 -11.5581
27 1 8.5616 2.5044 -9.9525
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 3.8327 -1.3816 0.2932
32 1 4.6516 -2.5456 2.3025
33 1 3.3148 -2.5213 4.3702
34 1 1.1570 -1.3363 4.4274
35 1 0.3357 -0.1765 2.4165
36 1 0.7283 -2.0249 -2.1728
37 1 2.3916 -2.6150 -1.9420
38 1 1.2723 -2.5445 -0.5597
39 1 3.9067 -1.6868 -2.9665
40 1 2.5342 -1.0416 -3.8985
41 1 5.2605 1.3636 -6.2461
42 1 6.6328 0.7190 -5.3135
43 1 6.7446 -1.2382 -6.8325
44 1 5.3722 -0.5931 -7.7646
45 1 7.8251 -1.5466 -10.3400
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000812616492.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:15:23
Heat of formation + Delta-G solvation = -97.545323 kcal
Electronic energy + Delta-G solvation = -25881.397898 eV
Core-core repulsion = 22057.103722 eV
Total energy + Delta-G solvation = -3824.294176 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.83547 -39.98173 -39.05476 -36.50955 -35.93610 -33.59552 -33.19127 -31.28058
-31.17401 -29.73064 -28.55237 -27.34181 -25.87716 -24.20641 -22.73859 -22.29390
-21.21374 -19.89182 -19.50257 -17.73743 -17.61624 -16.96719 -16.72580 -16.58675
-16.07191 -15.55060 -15.42232 -15.12124 -14.77097 -14.45916 -14.22209 -13.83901
-13.77632 -13.51586 -13.33243 -13.11112 -12.80450 -12.72120 -12.34550 -12.28433
-12.24243 -12.21370 -11.95426 -11.32343 -11.28678 -11.21862 -10.95658 -10.64362
-10.57019 -10.07575 -10.04961 -9.95213 -9.57383 -9.26055 -9.18214 -9.17034
-8.99808 -8.37586 -6.01611 -4.06239 0.96423 1.06127 2.25577 2.31294
2.75051 3.24425 3.32514 3.38777 3.42351 3.45837 4.14110 4.31687
4.45138 4.48266 4.65141 4.70464 4.73078 4.80792 4.92143 4.93300
4.99882 5.08256 5.14407 5.21521 5.24571 5.33978 5.35487 5.46566
5.52452 5.61479 5.68662 5.72251 5.98671 6.12719 6.12954 6.18789
6.20296 6.33144 6.55753 6.64276 6.86230 6.94200 7.66102 7.72376
7.85725 7.97614 8.20692 8.37456 9.00725 9.57847 11.09396
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.028378 B = 0.002041 C = 0.002005
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 986.437206 B =13717.371708 C =13964.602551
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.177 3.823
3 H 0.115 0.885
4 C -0.096 4.096
5 C -0.103 4.103
6 C -0.118 4.118
7 C -0.122 4.122
8 C -0.120 4.120
9 C -0.114 4.114
10 N -0.610 5.610
11 C 0.072 3.928
12 C 0.518 3.482
13 O -0.511 6.511
14 C 0.047 3.953
15 O -0.343 6.343
16 C 0.459 3.541
17 O -0.506 6.506
18 C -0.102 4.102
19 C 0.034 3.966
20 C -0.528 4.528
21 H 0.059 0.941
22 C 0.058 3.942
23 N -0.890 5.890
24 Si 0.896 3.104
25 H -0.280 1.280
26 H -0.286 1.286
27 H -0.273 1.273
28 H 0.073 0.927
29 H 0.065 0.935
30 H 0.063 0.937
31 H 0.119 0.881
32 H 0.122 0.878
33 H 0.121 0.879
34 H 0.122 0.878
35 H 0.126 0.874
36 H 0.063 0.937
37 H 0.074 0.926
38 H 0.078 0.922
39 H 0.098 0.902
40 H 0.099 0.901
41 H 0.095 0.905
42 H 0.095 0.905
43 H 0.026 0.974
44 H 0.026 0.974
45 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.070 -2.517 26.461 31.061
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.074 3.926
3 H 0.132 0.868
4 C -0.097 4.097
5 C -0.121 4.121
6 C -0.136 4.136
7 C -0.140 4.140
8 C -0.138 4.138
9 C -0.132 4.132
10 N -0.346 5.346
11 C -0.071 4.071
12 C 0.305 3.695
13 O -0.385 6.385
14 C -0.030 4.030
15 O -0.260 6.260
16 C 0.303 3.697
17 O -0.392 6.392
18 C -0.139 4.139
19 C -0.004 4.004
20 C -0.566 4.566
21 H 0.078 0.922
22 C -0.144 4.144
23 N -0.528 5.528
24 Si 0.724 3.276
25 H -0.206 1.206
26 H -0.212 1.212
27 H -0.198 1.198
28 H 0.092 0.908
29 H 0.084 0.916
30 H 0.082 0.918
31 H 0.137 0.863
32 H 0.140 0.860
33 H 0.139 0.861
34 H 0.140 0.860
35 H 0.144 0.856
36 H 0.081 0.919
37 H 0.092 0.908
38 H 0.097 0.903
39 H 0.116 0.884
40 H 0.117 0.883
41 H 0.113 0.887
42 H 0.113 0.887
43 H 0.044 0.956
44 H 0.045 0.955
45 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -15.931 -2.379 26.317 30.855
hybrid contribution 0.554 0.098 -0.529 0.773
sum -15.377 -2.281 25.788 30.111
Atomic orbital electron populations
1.22186 0.93676 1.02872 1.02973 1.19905 0.94251 0.97422 0.80994
0.86760 1.20172 0.95343 0.98957 0.95231 1.21008 0.95425 0.97118
0.98552 1.21190 0.99878 0.99496 0.93030 1.21188 0.95118 0.99594
0.98073 1.21142 0.96467 0.98008 0.98224 1.21066 0.99808 0.99898
0.92458 1.47778 1.46543 1.16105 1.24166 1.21877 1.00791 0.82045
1.02359 1.20271 0.78588 0.86649 0.83956 1.90747 1.56110 1.18004
1.73642 1.22566 0.95043 0.93307 0.92099 1.86666 1.56610 1.45566
1.37136 1.24951 0.79332 0.87442 0.78001 1.90632 1.58954 1.20839
1.68783 1.21802 0.95674 0.99136 0.97337 1.19031 0.96824 0.95189
0.89322 1.21158 1.26977 1.00804 1.07683 0.92230 1.25022 0.96736
0.95083 0.97522 1.69992 1.43787 1.15653 1.23416 0.86529 0.81182
0.80609 0.79282 1.20600 1.21202 1.19764 0.90826 0.91570 0.91784
0.86314 0.85984 0.86141 0.86024 0.85611 0.91888 0.90774 0.90341
0.88449 0.88346 0.88694 0.88708 0.95566 0.95538 0.92858
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.97 8.41 37.16 0.31 -0.66 16
2 C 0.18 1.54 3.03 -69.08 -0.21 1.33 16
3 H 0.11 1.23 6.92 -51.93 -0.36 0.88 16
4 C -0.10 -0.81 4.85 -104.62 -0.51 -1.32 16
5 C -0.10 -0.95 8.97 -39.58 -0.35 -1.31 16
6 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16
7 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16
8 C -0.12 -0.82 10.05 -39.58 -0.40 -1.21 16
9 C -0.11 -0.81 9.14 -39.58 -0.36 -1.17 16
10 N -0.61 -5.73 1.79 -175.26 -0.31 -6.04 16
11 C 0.07 0.47 8.72 59.84 0.52 0.99 16
12 C 0.52 6.76 7.61 -10.99 -0.08 6.67 16
13 O -0.51 -8.68 15.84 -14.10 -0.22 -8.90 16
14 C 0.05 0.64 4.57 36.01 0.16 0.80 16
15 O -0.34 -6.05 9.75 -45.92 -0.45 -6.50 16
16 C 0.46 9.11 7.96 36.01 0.29 9.39 16
17 O -0.51 -11.14 15.73 -18.74 -0.29 -11.43 16
18 C -0.10 -2.13 5.75 -27.88 -0.16 -2.29 16
19 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16
20 C -0.53 -14.84 9.11 -34.45 -0.31 -15.15 16
21 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16
22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
23 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16
24 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16
25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
28 H 0.07 0.35 6.51 -51.93 -0.34 0.01 16
29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
30 H 0.06 0.34 7.41 -51.93 -0.38 -0.04 16
31 H 0.12 1.19 7.30 -52.49 -0.38 0.81 16
32 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16
33 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16
34 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16
35 H 0.13 0.65 6.16 -52.48 -0.32 0.32 16
36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16
37 H 0.07 0.45 6.66 -51.93 -0.35 0.11 16
38 H 0.08 0.44 7.29 -51.93 -0.38 0.06 16
39 H 0.10 1.15 7.40 -51.93 -0.38 0.77 16
40 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16
41 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16
42 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16
43 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16
44 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16
45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
LS Contribution 377.97 15.07 5.70 5.70
Total: -1.00 -34.96 377.97 -8.64 -43.61
By element:
Atomic # 1 Polarization: 4.16 SS G_CDS: -6.66 Total: -2.50 kcal
Atomic # 6 Polarization: -2.10 SS G_CDS: -2.12 Total: -4.21 kcal
Atomic # 7 Polarization: -32.72 SS G_CDS: 0.42 Total: -32.30 kcal
Atomic # 8 Polarization: -25.86 SS G_CDS: -0.97 Total: -26.83 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -34.96 -8.64 -43.61 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000812616492.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.940 kcal
(2) G-P(sol) polarization free energy of solvation -34.962 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.902 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.545 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds