Wall clock time and date at job start Tue Mar 31 2020 12:15:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09005 * 109.46801 * 2 1
4 4 C 1.50702 * 109.47062 * 119.99712 * 2 1 3
5 5 C 1.38238 * 119.99705 * 150.39164 * 4 2 1
6 6 C 1.38231 * 119.99587 * 179.97438 * 5 4 2
7 7 C 1.38232 * 120.00692 * 359.97438 * 6 5 4
8 8 C 1.38242 * 119.99770 * 359.97438 * 7 6 5
9 9 C 1.38233 * 119.99993 * 330.30069 * 4 2 1
10 10 N 1.46500 * 109.47438 * 240.00041 * 2 1 3
11 11 C 1.46493 * 119.99778 * 305.13377 * 10 2 1
12 12 C 1.34771 * 119.99883 * 125.13274 * 10 2 1
13 13 O 1.21278 * 120.00507 * 0.02562 * 12 10 2
14 14 C 1.50701 * 119.99799 * 180.02562 * 12 10 2
15 15 O 1.45195 * 109.47201 * 180.02562 * 14 12 10
16 16 C 1.34238 * 117.00305 * 179.97438 * 15 14 12
17 17 O 1.20817 * 119.99606 * 0.02562 * 16 15 14
18 18 C 1.50700 * 119.99832 * 179.97438 * 16 15 14
19 19 C 1.53006 * 109.46758 * 180.02562 * 18 16 15
20 20 C 1.50691 * 109.47036 * 180.02562 * 19 18 16
21 21 H 1.07998 * 120.00304 * 0.02562 * 20 19 18
22 22 C 1.37875 * 120.00004 * 180.02562 * 20 19 18
23 23 N 1.31515 * 119.99869 * 0.02562 * 22 20 19
24 24 Si 1.86799 * 120.00376 * 179.97438 * 22 20 19
25 25 H 1.48506 * 109.47291 * 90.00106 * 24 22 20
26 26 H 1.48497 * 109.47419 * 210.00113 * 24 22 20
27 27 H 1.48505 * 109.47178 * 330.00428 * 24 22 20
28 28 H 1.09001 * 109.46988 * 299.99743 * 1 2 3
29 29 H 1.08999 * 109.47090 * 60.00204 * 1 2 3
30 30 H 1.09005 * 109.46801 * 179.97438 * 1 2 3
31 31 H 1.07999 * 120.00441 * 0.25801 * 5 4 2
32 32 H 1.08001 * 119.99734 * 179.97438 * 6 5 4
33 33 H 1.07999 * 120.00494 * 179.97438 * 7 6 5
34 34 H 1.08001 * 120.00270 * 179.97438 * 8 7 6
35 35 H 1.08003 * 120.00214 * 0.08682 * 9 4 2
36 36 H 1.08998 * 109.47235 * 95.29758 * 11 10 2
37 37 H 1.09003 * 109.47137 * 215.29585 * 11 10 2
38 38 H 1.09000 * 109.47410 * 335.30153 * 11 10 2
39 39 H 1.09006 * 109.47188 * 300.00135 * 14 12 10
40 40 H 1.09002 * 109.47141 * 60.00282 * 14 12 10
41 41 H 1.08994 * 109.47715 * 300.00294 * 18 16 15
42 42 H 1.09002 * 109.47168 * 60.00928 * 18 16 15
43 43 H 1.09002 * 109.46920 * 300.00536 * 19 18 16
44 44 H 1.09002 * 109.46739 * 59.99776 * 19 18 16
45 45 H 0.97004 * 120.00233 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2305
5 6 3.2441 -1.3749 1.1986
6 6 3.7051 -2.0261 2.3275
7 6 2.9548 -2.0122 3.4884
8 6 1.7435 -1.3468 3.5206
9 6 1.2823 -0.6958 2.3916
10 7 2.0184 -0.6906 -1.1962
11 6 1.5743 -2.0561 -1.4862
12 6 2.8763 -0.0696 -2.0297
13 8 3.2444 1.0607 -1.7893
14 6 3.3783 -0.7798 -3.2604
15 8 4.2829 0.0926 -3.9875
16 6 4.8221 -0.3933 -5.1167
17 8 4.5469 -1.5104 -5.4855
18 6 5.7698 0.4551 -5.9250
19 6 6.2354 -0.3294 -7.1533
20 6 7.1835 0.5186 -7.9612
21 1 7.4298 1.5171 -7.6314
22 6 7.7366 0.0199 -9.1215
23 7 7.4363 -1.1958 -9.5235
24 14 8.9114 1.0713 -10.1234
25 1 10.3022 0.8421 -9.6561
26 1 8.8043 0.7033 -11.5581
27 1 8.5616 2.5044 -9.9525
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 3.8327 -1.3816 0.2932
32 1 4.6516 -2.5456 2.3025
33 1 3.3148 -2.5213 4.3702
34 1 1.1570 -1.3363 4.4274
35 1 0.3357 -0.1765 2.4165
36 1 0.7283 -2.0249 -2.1728
37 1 2.3916 -2.6150 -1.9420
38 1 1.2723 -2.5445 -0.5597
39 1 3.9067 -1.6868 -2.9665
40 1 2.5342 -1.0416 -3.8985
41 1 5.2605 1.3636 -6.2461
42 1 6.6328 0.7190 -5.3135
43 1 6.7446 -1.2382 -6.8325
44 1 5.3722 -0.5931 -7.7646
45 1 7.8251 -1.5466 -10.3400
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000812616492.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:15:22
Heat of formation + Delta-G solvation = -115.919285 kcal
Electronic energy + Delta-G solvation = -25882.194652 eV
Core-core repulsion = 22057.103722 eV
Total energy + Delta-G solvation = -3825.090931 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.90074 -41.21424 -39.89636 -37.71287 -37.08695 -35.65911 -33.91975 -33.17247
-31.83034 -30.48644 -29.57331 -28.01907 -27.76461 -24.97766 -24.08979 -23.29552
-22.03864 -21.53054 -20.32976 -19.24690 -18.38177 -18.30193 -18.08036 -17.84615
-17.41146 -16.57388 -16.49616 -16.42301 -15.88475 -15.66654 -15.20397 -14.80026
-14.68969 -14.33586 -14.27737 -14.13110 -13.95154 -13.85814 -13.72953 -13.30028
-13.27430 -13.15341 -12.83639 -12.79058 -12.53690 -12.51767 -12.03539 -11.93169
-11.89322 -11.84416 -11.77689 -11.53589 -11.30873 -11.02456 -10.57503 -9.93606
-9.83900 -9.63549 -8.20259 -6.33545 0.37040 0.47950 1.14880 1.17261
1.30086 1.43929 1.45567 1.56933 2.11720 2.43703 2.86658 3.13497
3.23245 3.62839 3.82048 3.89526 3.94378 4.00239 4.11489 4.16437
4.19495 4.26030 4.32719 4.42684 4.43274 4.56727 4.58231 4.65159
4.72096 4.83241 4.86534 4.94221 5.05778 5.14070 5.20178 5.22324
5.33268 5.46630 5.55044 5.56324 5.62043 5.69963 5.80269 6.06960
6.09304 6.13421 6.69763 6.84096 6.89887 7.36336 8.92202
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.028378 B = 0.002041 C = 0.002005
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 986.437206 B =13717.371708 C =13964.602551
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.175 3.825
3 H 0.088 0.912
4 C -0.105 4.105
5 C -0.123 4.123
6 C -0.130 4.130
7 C -0.126 4.126
8 C -0.121 4.121
9 C -0.114 4.114
10 N -0.597 5.597
11 C 0.065 3.935
12 C 0.520 3.480
13 O -0.560 6.560
14 C 0.041 3.959
15 O -0.347 6.347
16 C 0.470 3.530
17 O -0.533 6.533
18 C -0.096 4.096
19 C 0.040 3.960
20 C -0.546 4.546
21 H 0.075 0.925
22 C -0.003 4.003
23 N -0.934 5.934
24 Si 0.974 3.026
25 H -0.272 1.272
26 H -0.284 1.284
27 H -0.258 1.258
28 H 0.091 0.909
29 H 0.059 0.941
30 H 0.077 0.923
31 H 0.101 0.899
32 H 0.128 0.872
33 H 0.140 0.860
34 H 0.147 0.853
35 H 0.148 0.852
36 H 0.080 0.920
37 H 0.078 0.922
38 H 0.092 0.908
39 H 0.114 0.886
40 H 0.117 0.883
41 H 0.114 0.886
42 H 0.113 0.887
43 H -0.007 1.007
44 H -0.006 1.006
45 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.060 -1.996 28.119 32.950
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.072 3.928
3 H 0.106 0.894
4 C -0.106 4.106
5 C -0.141 4.141
6 C -0.148 4.148
7 C -0.144 4.144
8 C -0.139 4.139
9 C -0.132 4.132
10 N -0.330 5.330
11 C -0.076 4.076
12 C 0.307 3.693
13 O -0.438 6.438
14 C -0.035 4.035
15 O -0.263 6.263
16 C 0.315 3.685
17 O -0.422 6.422
18 C -0.133 4.133
19 C 0.003 3.997
20 C -0.583 4.583
21 H 0.093 0.907
22 C -0.201 4.201
23 N -0.573 5.573
24 Si 0.797 3.203
25 H -0.197 1.197
26 H -0.210 1.210
27 H -0.182 1.182
28 H 0.110 0.890
29 H 0.078 0.922
30 H 0.096 0.904
31 H 0.120 0.880
32 H 0.146 0.854
33 H 0.158 0.842
34 H 0.165 0.835
35 H 0.166 0.834
36 H 0.099 0.901
37 H 0.096 0.904
38 H 0.110 0.890
39 H 0.132 0.868
40 H 0.134 0.866
41 H 0.132 0.868
42 H 0.132 0.868
43 H 0.012 0.988
44 H 0.013 0.987
45 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -16.959 -1.873 28.022 32.808
hybrid contribution 0.778 -0.142 -0.900 1.198
sum -16.181 -2.015 27.122 31.646
Atomic orbital electron populations
1.22158 0.91264 1.03934 1.03611 1.19991 0.95990 0.96019 0.80772
0.89404 1.20172 0.95434 0.99281 0.95685 1.20997 0.96004 0.98605
0.98529 1.21357 1.00512 0.99717 0.93255 1.21486 0.95206 0.99440
0.98237 1.21501 0.96387 0.97034 0.98999 1.21332 1.00395 0.99614
0.91847 1.47816 1.44865 1.16917 1.23446 1.22127 1.01547 0.80357
1.03617 1.20208 0.78875 0.86076 0.84129 1.90725 1.58240 1.19979
1.74867 1.22917 0.95086 0.93240 0.92282 1.86599 1.57123 1.46347
1.36268 1.24518 0.78969 0.86610 0.78378 1.90622 1.60013 1.21900
1.69690 1.21546 0.97042 0.98924 0.95770 1.18797 0.95166 0.94598
0.91124 1.21632 1.27065 1.01574 1.08068 0.90710 1.26069 0.98671
0.96387 0.98962 1.70146 1.45303 1.17756 1.24119 0.85322 0.78627
0.79142 0.77171 1.19728 1.20999 1.18227 0.89007 0.92160 0.90409
0.88045 0.85382 0.84197 0.83502 0.83435 0.90127 0.90364 0.88951
0.86804 0.86556 0.86798 0.86846 0.98809 0.98742 0.92699
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.57 8.41 71.98 0.61 -0.96 16
2 C 0.17 2.95 3.03 44.25 0.13 3.08 16
3 H 0.09 1.97 6.92 -2.38 -0.02 1.96 16
4 C -0.10 -1.68 4.85 -19.86 -0.10 -1.78 16
5 C -0.12 -2.27 8.97 22.27 0.20 -2.08 16
6 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16
7 C -0.13 -1.57 10.05 22.27 0.22 -1.34 16
8 C -0.12 -1.32 10.05 22.27 0.22 -1.10 16
9 C -0.11 -1.36 9.14 22.27 0.20 -1.15 16
10 N -0.60 -10.94 1.79 -826.81 -1.48 -12.41 16
11 C 0.07 0.75 8.72 127.77 1.11 1.86 16
12 C 0.52 13.69 7.61 87.66 0.67 14.36 16
13 O -0.56 -19.66 15.84 15.78 0.25 -19.41 16
14 C 0.04 1.10 4.57 71.24 0.33 1.43 16
15 O -0.35 -12.23 9.75 -45.14 -0.44 -12.67 16
16 C 0.47 18.80 7.96 71.24 0.57 19.37 16
17 O -0.53 -23.94 15.73 21.99 0.35 -23.60 16
18 C -0.10 -3.99 5.75 29.85 0.17 -3.81 16
19 C 0.04 2.20 4.26 29.85 0.13 2.32 16
20 C -0.55 -30.81 9.11 25.60 0.23 -30.57 16
21 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16
22 C 0.00 -0.17 5.46 84.65 0.46 0.30 16
23 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16
24 Si 0.97 44.11 29.54 68.60 2.03 46.14 16
25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
27 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16
28 H 0.09 0.62 6.51 -2.39 -0.02 0.61 16
29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
30 H 0.08 0.60 7.41 -2.38 -0.02 0.59 16
31 H 0.10 2.15 7.30 -2.91 -0.02 2.13 16
32 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16
33 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16
34 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16
35 H 0.15 1.04 6.16 -2.91 -0.02 1.02 16
36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16
37 H 0.08 0.86 6.66 -2.39 -0.02 0.85 16
38 H 0.09 0.85 7.29 -2.39 -0.02 0.83 16
39 H 0.11 2.65 7.40 -2.38 -0.02 2.63 16
40 H 0.12 2.67 8.10 -2.39 -0.02 2.65 16
41 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16
42 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16
43 H -0.01 -0.39 8.10 -2.39 -0.02 -0.41 16
44 H -0.01 -0.35 8.10 -2.39 -0.02 -0.37 16
45 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16
Total: -1.00 -77.79 377.97 7.36 -70.43
By element:
Atomic # 1 Polarization: 10.03 SS G_CDS: 0.98 Total: 11.02 kcal
Atomic # 6 Polarization: -7.30 SS G_CDS: 5.38 Total: -1.92 kcal
Atomic # 7 Polarization: -68.80 SS G_CDS: -1.19 Total: -69.99 kcal
Atomic # 8 Polarization: -55.84 SS G_CDS: 0.16 Total: -55.68 kcal
Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal
Total: -77.79 7.36 -70.43 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000812616492.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.485 kcal
(2) G-P(sol) polarization free energy of solvation -77.790 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.276 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.356 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.434 kcal
(6) G-S(sol) free energy of system = (1) + (5) -115.919 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds