Wall clock time and date at job start Tue Mar 31 2020 12:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 5 5 C 1.46905 * 110.99870 * 274.99736 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47360 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47387 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00144 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99821 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00108 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99834 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47164 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46812 * 120.00223 * 12 10 8 15 15 H 1.48494 * 109.47320 * 240.00038 * 12 10 8 16 16 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 17 17 C 1.38302 * 119.89344 * 264.99855 * 16 2 1 18 18 C 1.38017 * 120.14392 * 179.97438 * 17 16 2 19 19 C 1.39328 * 119.93406 * 0.02562 * 18 17 16 20 20 C 1.48469 * 120.10806 * 180.02562 * 19 18 17 21 21 N 1.34049 * 126.66683 * 359.68943 * 20 19 18 22 22 N 1.28988 * 107.26429 * 179.83572 * 21 20 19 23 23 N 1.28737 * 108.94050 * 0.42874 * 22 21 20 24 24 H 0.97004 * 125.33716 * 179.75811 * 23 22 21 25 25 N 1.28871 * 109.31647 * 359.72862 * 23 22 21 26 26 C 1.39250 * 119.79060 * 359.97438 * 19 18 17 27 27 C 1.38278 * 119.85239 * 359.72752 * 26 19 18 28 28 F 1.35102 * 119.96829 * 180.29026 * 27 26 19 29 29 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 31 31 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 32 32 H 1.00901 * 111.00067 * 38.94911 * 4 2 1 33 33 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 34 34 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 35 35 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 36 36 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 37 37 H 1.09001 * 109.46514 * 300.00105 * 7 6 5 38 38 H 1.08998 * 109.46924 * 59.99625 * 7 6 5 39 39 H 0.97004 * 119.99990 * 179.97438 * 11 10 8 40 40 H 1.08001 * 119.92759 * 359.97438 * 17 16 2 41 41 H 1.08003 * 120.03522 * 179.97438 * 18 17 16 42 42 H 1.07996 * 120.07363 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5962 -0.5329 3.5741 7 6 2.6611 0.4200 4.7695 8 6 3.1665 -0.3243 5.9784 9 1 3.4169 -1.3720 5.9018 10 6 3.3103 0.3327 7.1820 11 7 3.0059 1.6087 7.2752 12 14 3.9361 -0.5901 8.6808 13 1 4.2048 -2.0040 8.3151 14 1 5.1899 0.0426 9.1637 15 1 2.9119 -0.5422 9.7550 16 6 2.0323 -0.7104 -1.2304 17 6 2.3606 -2.0523 -1.1659 18 6 2.8206 -2.7082 -2.2897 19 6 2.9551 -2.0168 -3.4919 20 6 3.4490 -2.7187 -4.7034 21 7 3.8082 -4.0071 -4.7915 22 7 4.1726 -4.2204 -6.0103 23 7 4.0644 -3.1243 -6.6768 24 1 4.2796 -3.0154 -7.6164 25 7 3.6249 -2.1947 -5.8999 26 6 2.6237 -0.6657 -3.5538 27 6 2.1578 -0.0188 -2.4240 28 9 1.8301 1.2905 -2.4829 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.4495 -1.4979 1.4100 33 1 2.7589 1.0462 2.1182 34 1 1.0871 0.6163 2.5525 35 1 1.9202 -1.3567 3.8030 36 1 3.5917 -0.9263 3.3683 37 1 3.3369 1.2441 4.5408 38 1 1.6655 0.8130 4.9752 39 1 3.1067 2.0708 8.1221 40 1 2.2568 -2.5882 -0.2339 41 1 3.0768 -3.7560 -2.2372 42 1 2.7266 -0.1253 -4.4832 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824584338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:08 Heat of formation + Delta-G solvation = 88.679016 kcal Electronic energy + Delta-G solvation = -25029.552292 eV Core-core repulsion = 21154.458607 eV Total energy + Delta-G solvation = -3875.093685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.06686 -44.83722 -39.64639 -37.17623 -34.79673 -34.30391 -33.52287 -32.14433 -30.91162 -30.31196 -28.89276 -26.02059 -25.35085 -24.93157 -23.02083 -22.83530 -22.06546 -20.83085 -20.07389 -19.65182 -17.73424 -17.52199 -16.67441 -16.39171 -16.10394 -15.79253 -15.35876 -15.03773 -14.59643 -14.38621 -14.24616 -14.21202 -13.59523 -13.34189 -13.14421 -12.93968 -12.72882 -12.50193 -12.19731 -12.12867 -11.82887 -11.73469 -11.57329 -11.43969 -11.28570 -11.10832 -11.00637 -10.85794 -10.57963 -10.45749 -9.70448 -9.34669 -9.13698 -9.03593 -8.77367 -8.33363 -8.26538 -5.98182 -4.00131 0.29985 0.80456 0.96243 1.84246 1.96441 3.22558 3.32630 3.37379 3.40099 3.44534 3.73779 4.07075 4.22996 4.47884 4.53523 4.64280 4.79931 4.92269 5.03591 5.06178 5.07990 5.19780 5.37815 5.44968 5.57107 5.61732 5.81698 5.81915 5.86154 5.87791 5.94699 6.02621 6.12630 6.14612 6.31441 6.57100 6.71476 6.75149 7.13824 7.26073 7.53643 7.70343 7.75411 7.84776 8.02340 8.45453 9.07411 9.63944 11.13253 Molecular weight = 319.15amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.002068 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.710801 B =13539.394801 C =14454.744551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.117 3.883 3 H 0.093 0.907 4 N -0.683 5.683 5 C 0.059 3.941 6 C -0.107 4.107 7 C 0.021 3.979 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.055 3.945 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.285 1.285 16 C -0.074 4.074 17 C -0.070 4.070 18 C -0.084 4.084 19 C -0.003 4.003 20 C 0.224 3.776 21 N -0.264 5.264 22 N -0.048 5.048 23 N -0.228 5.228 24 H 0.476 0.524 25 N -0.293 5.293 26 C -0.116 4.116 27 C 0.097 3.903 28 F -0.134 7.134 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.340 0.660 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.678 -7.114 -29.406 30.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.006 3.994 3 H 0.111 0.889 4 N -0.313 5.313 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.016 4.016 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.146 4.146 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.076 4.076 17 C -0.088 4.088 18 C -0.105 4.105 19 C -0.006 4.006 20 C -0.056 4.056 21 N -0.137 5.137 22 N -0.043 5.043 23 N -0.074 5.074 24 H 0.330 0.670 25 N -0.145 5.145 26 C -0.137 4.137 27 C 0.077 3.923 28 F -0.112 7.112 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.795 -7.366 -29.785 30.735 hybrid contribution -0.604 0.461 0.594 0.964 sum -2.399 -6.906 -29.191 30.092 Atomic orbital electron populations 1.22457 0.95655 1.02585 1.02863 1.20392 0.93039 0.97802 0.88156 0.88880 1.60661 1.56491 1.10206 1.03926 1.22177 0.99368 0.95386 0.89944 1.21624 1.00152 0.98944 0.93769 1.19070 0.97050 0.94353 0.91151 1.21293 1.43360 0.96453 0.94500 0.92593 1.25037 0.95671 0.94891 0.99007 1.69976 1.49009 1.09006 1.25594 0.86543 0.78491 0.80077 0.82938 1.19710 1.21043 1.21081 1.20181 0.98974 0.94909 0.93567 1.20884 0.96410 0.92908 0.98573 1.21269 0.97585 1.00910 0.90701 1.16872 1.03056 0.91927 0.88791 1.23597 1.00795 0.88965 0.92258 1.76111 1.14838 1.14409 1.08372 1.78939 1.15480 1.10600 0.99329 1.47738 1.41231 1.03745 1.14644 0.66982 1.74937 1.18534 1.18409 1.02621 1.20953 1.00480 0.93822 0.98472 1.17236 1.02260 0.78719 0.94097 1.91510 1.90296 1.32500 1.96937 0.92028 0.91504 0.91992 0.84161 0.91340 0.95379 0.93582 0.92465 0.96573 0.96799 0.93108 0.83413 0.83998 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.14 37.16 0.34 -1.47 16 2 C 0.12 1.36 2.56 -68.87 -0.18 1.19 16 3 H 0.09 1.19 7.45 -51.93 -0.39 0.80 16 4 N -0.68 -8.99 5.25 -107.95 -0.57 -9.56 16 5 C 0.06 0.97 5.48 -3.82 -0.02 0.95 16 6 C -0.11 -2.14 5.41 -26.73 -0.14 -2.28 16 7 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 8 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 9 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 10 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 11 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 12 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 C -0.07 -0.81 5.07 -104.50 -0.53 -1.34 16 17 C -0.07 -0.69 9.30 -39.64 -0.37 -1.06 16 18 C -0.08 -0.80 9.70 -39.26 -0.38 -1.18 16 19 C 0.00 -0.03 5.88 -104.90 -0.62 -0.65 16 20 C 0.22 2.26 7.94 -156.31 -1.24 1.02 16 21 N -0.26 -2.81 12.23 32.15 0.39 -2.41 16 22 N -0.05 -0.42 13.47 60.35 0.81 0.39 16 23 N -0.23 -1.36 7.90 60.35 0.48 -0.88 16 24 H 0.48 0.48 8.96 -340.36 -3.05 -2.57 16 25 N -0.29 -2.50 12.08 32.17 0.39 -2.11 16 26 C -0.12 -1.15 9.68 -39.19 -0.38 -1.53 16 27 C 0.10 1.05 7.23 -39.46 -0.29 0.77 16 28 F -0.13 -1.56 16.56 2.25 0.04 -1.52 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.07 0.72 7.45 -51.92 -0.39 0.34 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.34 4.02 7.89 -39.29 -0.31 3.71 16 33 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 34 H 0.03 0.45 7.44 -51.93 -0.39 0.07 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.15 1.34 6.87 -52.49 -0.36 0.98 16 41 H 0.14 1.19 7.89 -52.48 -0.41 0.78 16 42 H 0.14 1.24 7.88 -52.49 -0.41 0.83 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -32.75 363.35 -9.82 -42.58 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -8.20 Total: -3.67 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -4.35 Total: -18.70 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 2.24 Total: -40.89 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.75 -9.82 -42.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824584338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.257 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds